Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Ochotona_20princeps_20[refseq_20GCF_5F000292845.1_202012-08-27] 10,421 sequences; 2,229,840,584 total letters Query= NC_030842.1 Length=115510 Score E Sequences producing significant alignments: (Bits) Value seq6 123 2e-23 >seq6 Length=51880498 Score = 123 bits (136), Expect = 2e-23 Identities = 124/161 (77%), Gaps = 0/161 (0%) Strand=Plus/Minus Query 27208 AGCCCGGTGACGTGAGCCATCATGTACGTGAGGAGAGAGTAGCTGGCGATGTTAAAGGGT 27267 || || ||||| || || |||||||| ||||| || | ||||||||| ||||| ||||| Sbjct 43802740 AGTCCAGTGACATGCGCAATCATGTAGGTGAGCAGGGCGTAGCTGGCAATGTTGAAGGGC 43802681 Query 27268 ACCCCGAGCCCCATGTCCCCCGACCTCTGGTAGAGCTGACACGAGAGCTCTCCATCGCTT 27327 || || || |||||||| |||||||||||||| | ||| || || ||||| || | | Sbjct 43802680 ACGCCCAGGCCCATGTCTCCCGACCTCTGGTACAACTGGCAGGACAGCTCGCCGTTCACT 43802621 Query 27328 ACGTAAAACTGACATATGGCGTGGCACGGAGGAAGAGCCAT 27368 ||||| ||||| || | || ||||| || || || ||||| Sbjct 43802620 ACGTAGAACTGGCAGAGAGCATGGCATGGGGGCAGGGCCAT 43802580 Score = 104 bits (114), Expect = 2e-17 Identities = 119/160 (74%), Gaps = 0/160 (0%) Strand=Plus/Minus Query 27497 TGTACTCTGCTCCGAAATGCCTCCATTGGAACCCGTACACCGGTCCCAGGTCTCCCTCTT 27556 |||| ||||| || ||||||||||| ||||| || || || || |||||||| ||||| | Sbjct 43799761 TGTATTCTGCCCCAAAATGCCTCCACTGGAAGCCATAAACTGGACCCAGGTCCCCCTCCT 43799702 Query 27557 CCCTGTGCTCGAAGCCCCTCTTGTCCAAAAAGTCTCTGGAACCGTTGGCGTCCCAGATCT 27616 | ||| ||| || |||||| ||| |||| |||| |||| || |||||||| | Sbjct 43799701 CTCTGGTTGAGAATCCAAGGCTGTCCAGAAATTCTCGGGAAGCGTTCGCATCCCAGATTT 43799642 Query 27617 TTACCCCCTTCTCGGAGAGCTCTTTGGAGTTTGTGGACCC 27656 | || ||||| | || || ||||| | |||||||| || Sbjct 43799641 TCACTCCCTTGGCAGACAGTTCTTTAGCATTTGTGGATCC 43799602 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 369460270391651