Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Ochotona_20princeps_20[refseq_20GCF_5F000292845.1_202012-08-27] 10,421 sequences; 2,229,840,584 total letters Query= NC_031033.1 Length=217124 Score E Sequences producing significant alignments: (Bits) Value seq40 98.7 1e-15 >seq40 Length=19049039 Score = 98.7 bits (108), Expect = 1e-15 Identities = 111/149 (74%), Gaps = 0/149 (0%) Strand=Plus/Minus Query 78003 ACTCGTTTCATAAAGAGATCAGGTATCCATAGAGCAATAAATAGATCTCGGGTTCTATGT 78062 ||||||||||| |||||||| || ||||| || |||| || ||||| | | | ||| Sbjct 15940735 ACTCGTTTCATGAAGAGATCTGGAATCCAAAGGGCAAAGAAAAGATCCCTTGCGCGCTGT 15940676 Query 78063 TCTTCATTTCCTGTATTCTTTTTAAGATCGAGAAACTCCATAATATCAGAATGCCATGGT 78122 ||||| |||||||| ||||| || | ||| || ||||| | ||||| ||||||| || Sbjct 15940675 TCTTCCTTTCCTGTGTTCTTCTTTAAATCAAGGAACTCAAAGATATCTAAATGCCAAGGC 15940616 Query 78123 TCTAGATATATTGCCATAACTCCAGGTCG 78151 || || || || || | ||||||| || Sbjct 15940615 TCCAGGTAAATAGCAAATGCTCCAGGACG 15940587 Score = 96.9 bits (106), Expect = 5e-15 Identities = 106/141 (75%), Gaps = 0/141 (0%) Strand=Plus/Minus Query 78399 GTTCCTGCATTAAATAATGTCGGAGATGCATGCGTAAACCATTTTTCAGAAAGTAGATTG 78458 || || ||||| || | ||| ||||| || || |||||||| || |||||||| || || Sbjct 15934822 GTGCCAGCATTGAAGAGTGTGGGAGAGGCGTGAGTAAACCACTTCTCAGAAAGGAGGTTA 15934763 Query 78459 TATGTTTCAATAGCTGATTCTATGTCCCATTGATGAATTCCTACCGCTACACGCATCAAC 78518 || |||||||| || | || ||||| || ||||| || || | ||| | ||||||| Sbjct 15934762 TAGGTTTCAATTGCAGCATCAATGTCTTCTTTGTGAATCCCCACAGATACCCTCATCAAC 15934703 Query 78519 ATATGCTGAGGTCTTTCAACC 78539 ||||| || ||||| ||| || Sbjct 15934702 ATATGTTGTGGTCTCTCAGCC 15934682 Score = 96.9 bits (106), Expect = 5e-15 Identities = 101/133 (76%), Gaps = 0/133 (0%) Strand=Plus/Minus Query 77127 TGAAATTCTCCAGACAATACTCTACGAGTGTAAATATTACTGGTATATGGTTCCACAGAT 77186 ||||||||||| ||||| ||||| ||||| || || || ||||| || ||||| | || Sbjct 15950530 TGAAATTCTCCTGACAAGACTCTGCGAGTATAGATGTTGCTGGTGTAAGGTTCAATCGAC 15950471 Query 77187 TCATTGTTTCCCAAAATTTGAGCAGTAGAAGCAGTTGGCATAGGTGCCACCAATAAACTA 77246 ||||| || |||| || |||||||| || || || ||||| || || | | ||||| Sbjct 15950470 TCATTATTCCCCAGGATCTGAGCAGTGGAGGCGGTCGGCATTGGGGCAATAAGCAAACTG 15950411 Query 77247 TTTCTGAGACCAT 77259 ||||| | ||||| Sbjct 15950410 TTTCTTATACCAT 15950398 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 694578310705440