Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Ochotona_20princeps_20[refseq_20GCF_5F000292845.1_202012-08-27] 10,421 sequences; 2,229,840,584 total letters Query= NC_031038.1 Length=222832 Score E Sequences producing significant alignments: (Bits) Value seq9 114 2e-20 seq14 107 3e-18 seq40 102 1e-16 >seq9 Length=49469770 Score = 114 bits (126), Expect = 2e-20 Identities = 107/136 (79%), Gaps = 0/136 (0%) Strand=Plus/Plus Query 46652 CTTCATCTCTACTAATTAATTCGTTAGAAAATGTGAGCCCAGGCATTAGTCCACGCTTTT 46711 |||||||||| || || | ||| || ||||| ||||| |||||||| || || | ||| | Sbjct 15784988 CTTCATCTCTGCTGATGAGTTCATTGGAAAAAGTGAGTCCAGGCATCAGACCTCTCTTCT 15785047 Query 46712 TGAGCCAAAATATAGCCGCGAAAGATCCAGAAAAGAATATGCCTTCTACAGCCGCGAATG 46771 | ||||| |||||||| || |||||||| || ||||| || ||||||||||| || || | Sbjct 15785048 TCAGCCAGAATATAGCAGCAAAAGATCCCGAGAAGAAAATTCCTTCTACAGCAGCAAAGG 15785107 Query 46772 CGACAAGTCTCTCTCC 46787 | || | ||||| || Sbjct 15785108 CCACCACCCTCTCCCC 15785123 >seq14 Length=40210847 Score = 107 bits (118), Expect = 3e-18 Identities = 98/124 (79%), Gaps = 0/124 (0%) Strand=Plus/Minus Query 46654 TCATCTCTACTAATTAATTCGTTAGAAAATGTGAGCCCAGGCATTAGTCCACGCTTTTTG 46713 ||||| || ||||| | ||| || || || |||||||||||||| || || ||||| ||| Sbjct 6356605 TCATCCCTGCTAATGAGTTCATTGGAGAAAGTGAGCCCAGGCATCAGGCCTCGCTTCTTG 6356546 Query 46714 AGCCAAAATATAGCCGCGAAAGATCCAGAAAAGAATATGCCTTCTACAGCCGCGAATGCG 46773 ||||| || || | |||||| || || || ||||| |||||||| || || ||||| || Sbjct 6356545 AGCCAGAAGATGGACGCGAAGGAGCCGGAGAAGAAAATGCCTTCCACCGCAGCGAAGGCT 6356486 Query 46774 ACAA 46777 |||| Sbjct 6356485 ACAA 6356482 >seq40 Length=19049039 Score = 102 bits (112), Expect = 1e-16 Identities = 136/189 (72%), Gaps = 0/189 (0%) Strand=Plus/Minus Query 75958 ATATGTTTCGTAAGTCCCGTCCTTTTCAGCTAGTTCGCAACTCGCCTCTAACGCACCGTA 76017 ||| ||||| || | || | || | || || || ||||| || || || || || || Sbjct 15947554 ATACGTTTCATATGGGCCATGCTCCTTCGCCAGGTCACAACTAGCTTCCAAAGCTCCATA 15947495 Query 76018 ATAAATTGTTTCGAAAATCTTCTTATTAAGATCTTGCGCTTCAAGACTATCAAAAGGATA 76077 |||||| ||||| ||||||| |||||| || || || || |||| ||||||||||| Sbjct 15947494 ATAAATAGTTTCAAAAATCTGCTTATTCAGTAACTGTGCCTCTGGACTCTCAAAAGGATA 15947435 Query 76078 ATGTAAAAGAATAAATGCATCTGCTAGTCCCTGAACTCCAATACCAATAGGTCTATGTCT 76137 | |||||||| |||||||| || || || || ||||| ||||| || | ||| | Sbjct 15947434 TCTCATCAGAATAAAAGCATCTGCCAGACCTTGTACCCCAATTCCAATGGGACGATGGCG 15947375 Query 76138 CTTATTGGA 76146 ||||| || Sbjct 15947374 TTTATTTGA 15947366 Score = 100 bits (110), Expect = 4e-16 Identities = 102/133 (77%), Gaps = 0/133 (0%) Strand=Plus/Minus Query 75722 TGAAATTCTCCAGACAATACTCTTCGAGTGTAAATATTACTGGTATATGGTTCCACAGAT 75781 ||||||||||| ||||| ||||| ||||| || || || ||||| || ||||| | || Sbjct 15950530 TGAAATTCTCCTGACAAGACTCTGCGAGTATAGATGTTGCTGGTGTAAGGTTCAATCGAC 15950471 Query 75782 TCATTGTTTCCCAAAATTTGAGCAGTTGAAGCAGTCGGCATAGGTGCCACCAATAAACTA 75841 ||||| || |||| || |||||||| || || |||||||| || || | | ||||| Sbjct 15950470 TCATTATTCCCCAGGATCTGAGCAGTGGAGGCGGTCGGCATTGGGGCAATAAGCAAACTG 15950411 Query 75842 TTTCTGAGACCAT 75854 ||||| | ||||| Sbjct 15950410 TTTCTTATACCAT 15950398 Score = 87.8 bits (96), Expect = 3e-12 Identities = 99/133 (74%), Gaps = 0/133 (0%) Strand=Plus/Minus Query 76994 GTTCCTGCATTAAACAATGTAGGAGATGCATGAGTGAACCATTTTTCAGAAAGTAGATTG 77053 || || ||||| || | ||| ||||| || ||||| ||||| || |||||||| || || Sbjct 15934822 GTGCCAGCATTGAAGAGTGTGGGAGAGGCGTGAGTAAACCACTTCTCAGAAAGGAGGTTA 15934763 Query 77054 TATGTTTCAATAACTGCTTCTATATCCCATTGATGAATTCCTACAGCGACACGCATCAAC 77113 || |||||||| | || || || || || ||||| || |||| || | ||||||| Sbjct 15934762 TAGGTTTCAATTGCAGCATCAATGTCTTCTTTGTGAATCCCCACAGATACCCTCATCAAC 15934703 Query 77114 ATATGCTGAGGTC 77126 ||||| || |||| Sbjct 15934702 ATATGTTGTGGTC 15934690 Score = 84.2 bits (92), Expect = 3e-11 Identities = 111/152 (73%), Gaps = 4/152 (3%) Strand=Plus/Minus Query 76299 CTACCTCAT--TAGCATTGGCATATTGTATTATCTCCGTGCATAGATTACTACACTTGAT 76356 ||||||||| | || ||| ||||| || || || ||||| || || || |||||||| Sbjct 15941928 CTACCTCATCTTTGC--TGGTATATTCTACGATTTCTGTGCACAGGTTGCTGCACTTGAT 15941871 Query 76357 AGTTCCAAGATTTTGTTGGTTGCTCTTTTTGTTACATGAGTCCTTATAAAGAACAAACGG 76416 |||||||| || || ||||||||||| |||||| || || || || || | | || Sbjct 15941870 GGTTCCAAGGTTCTGCTGGTTGCTCTTGCGGTTACAAGAATCTTTGTAGAGCATGTAGGG 15941811 Query 76417 AGTTCCAGTTTCAATCTGTGATTCGATAATAG 76448 || || || || |||| || ||||| |||| Sbjct 15941810 GGTGCCTGTCTCCGTCTGAGACTCGATGATAG 15941779 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 712841531382720