Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Ochotona_20princeps_20[refseq_20GCF_5F000292845.1_202012-08-27] 10,421 sequences; 2,229,840,584 total letters Query= NC_031224.1 Length=59443 Score E Sequences producing significant alignments: (Bits) Value seq6 91.5 6e-14 >seq6 Length=51880498 Score = 91.5 bits (100), Expect = 6e-14 Identities = 110/147 (75%), Gaps = 2/147 (1%) Strand=Plus/Plus Query 52110 ATGGCGTTGGCTCCCTGCCATACACTATTCCAATTCTATGTAGCTGAA-GGTAAGCTTTC 52168 ||||| || | || |||||| | || | ||| ||||| |||| |||| || |||| || Sbjct 43802580 ATGGCCCTGCCCCCATGCCATGCTCTCTGCCAGTTCTACGTAG-TGAACGGCGAGCTGTC 43802638 Query 52169 GTGCCATTTGTATCAGCGGTCTGCCGACATGTTCTTGGGCGTTCCGTTTAACATTGCCAG 52228 ||||| ||||| ||| |||| | |||||| | ||||||| || || ||||||||||| Sbjct 43802639 CTGCCAGTTGTACCAGAGGTCGGGAGACATGGGCCTGGGCGTGCCCTTCAACATTGCCAG 43802698 Query 52229 CTATTCCTTGCTGACGCATCTGATTGC 52255 ||| || |||| || | ||||||| Sbjct 43802699 CTACGCCCTGCTCACCTACATGATTGC 43802725 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 190072475738810