Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Ochotona_20princeps_20[refseq_20GCF_5F000292845.1_202012-08-27] 10,421 sequences; 2,229,840,584 total letters Query= NC_031465.1 Length=360610 Score E Sequences producing significant alignments: (Bits) Value seq17 125 2e-23 seq65 122 2e-22 seq6 116 9e-21 seq76 114 3e-20 seq67 114 3e-20 seq42 105 2e-17 seq24 95.1 3e-14 seq49 91.5 3e-13 seq40 87.8 4e-12 >seq17 Length=35549867 Score = 125 bits (138), Expect = 2e-23 Identities = 159/219 (73%), Gaps = 0/219 (0%) Strand=Plus/Plus Query 151886 GAGTCTGAGGACAAGATGAAGAGTAGACTCTTTTTGGATGTTGTAATCGGCTAAAGTTCT 151945 |||||| || || ||||| ||||| ||||| || || | |||||| || | |||| ||| Sbjct 25101815 GAGTCTCAGCACCAGATGCAGAGTGGACTCCTTCTGAAGGTTGTAGTCAGATAAACTTCG 25101874 Query 151946 CCCATCTTCTAGGCTTTTCCCGGCGAAGATAAGCCTCTGCTGGTCCGCCGAGATTCCTTC 152005 |||||||| || || || || ||| | || || ||||| |||| | || ||||| Sbjct 25101875 GCCATCTTCCAGCTGCTTGCCAGCAAAGGTCAGTCTTTGCTGATCCGGAGGAATGCCTTC 25101934 Query 152006 CTTTTCTTGAATTTTTTGTTTGACAGTCTCTACGCTGTCTGAACTCTCTACTTCAAGAGT 152065 |||||| || ||||| ||| ||| |||| | ||||| ||| | ||||| || Sbjct 25101935 CTTTTCCTGGATTTTGGCTTTTACATGTTCTATCGTATCTGAGGGCTCAATCTCAAGGGT 25101994 Query 152066 AATAGTTTTGCCCGTGAGAGTCTTCACGAAGACCTGCAT 152104 || || ||||| || |||||||| ||||||| |||||| Sbjct 25101995 GATGGTCTTGCCTGTAAGAGTCTTGACGAAGATCTGCAT 25102033 Score = 113 bits (124), Expect = 1e-19 Identities = 158/222 (71%), Gaps = 0/222 (0%) Strand=Plus/Minus Query 151883 CCTGAGTCTGAGGACAAGATGAAGAGTAGACTCTTTTTGGATGTTGTAATCGGCTAAAGT 151942 ||| || | |||||| || || || || ||||| |||||||||||||| || | | || Sbjct 30593113 CCTAAGACGGAGGACCAGGTGCAGGGTGGACTCCTTTTGGATGTTGTAGTCAGACAGGGT 30593054 Query 151943 TCTCCCATCTTCTAGGCTTTTCCCGGCGAAGATAAGCCTCTGCTGGTCCGCCGAGATTCC 152002 | |||||||| || || || || ||||| ||||||| |||||| | | ||| || Sbjct 30593053 GCGGCCATCTTCCAGCTGCTTGCCTGCAAAGATCAGCCTCTTCTGGTCGGGAGGGATGCC 30592994 Query 152003 TTCCTTTTCTTGAATTTTTTGTTTGACAGTCTCTACGCTGTCTGAACTCTCTACTTCAAG 152062 |||||| || || || || |||||| |||| | | |||| ||| || || || Sbjct 30592993 TTCCTTATCCTGGATCTTGGCCTTGACATTCTCGATGGTGTCGCTGTGCTCAACCTCCAG 30592934 Query 152063 AGTAATAGTTTTGCCCGTGAGAGTCTTCACGAAGACCTGCAT 152104 || || || |||| || || |||||||| |||| |||||| Sbjct 30592933 GGTGATGGTCTTGCTGGTCAGGGTCTTCACAAAGATCTGCAT 30592892 >seq65 Length=10584338 Score = 122 bits (134), Expect = 2e-22 Identities = 160/222 (72%), Gaps = 0/222 (0%) Strand=Plus/Minus Query 151886 GAGTCTGAGGACAAGATGAAGAGTAGACTCTTTTTGGATGTTGTAATCGGCTAAAGTTCT 151945 |||||| || || ||||| ||||||||||| || || |||||||| || | |||||||| Sbjct 10480998 GAGTCTCAGCACCAGATGCAGAGTAGACTCCTTCTGAATGTTGTAGTCCGATAAAGTTCG 10480939 Query 151946 CCCATCTTCTAGGCTTTTCCCGGCGAAGATAAGCCTCTGCTGGTCCGCCGAGATTCCTTC 152005 |||| ||| || || || || ||||| || || ||||| ||| | |||||||| Sbjct 10480938 GCCATATTCCAGCTGCTTGCCAGCAAAGATCAGTCTTTGCTGATCCAGAGGAATTCCTTC 10480879 Query 152006 CTTTTCTTGAATTTTTTGTTTGACAGTCTCTACGCTGTCTGAACTCTCTACTTCAAGAGT 152065 ||| || || | ||| ||| || | |||| | || || ||| || || || || Sbjct 10480878 CTTATCCTGGACTTTGGCTTTTACGTTTTCTATCGTATCCGAGGGCTCAACCTCGAGGGT 10480819 Query 152066 AATAGTTTTGCCCGTGAGAGTCTTCACGAAGACCTGCATTTT 152107 || || ||||| || || ||||| || ||||||||||| || Sbjct 10480818 GATGGTCTTGCCTGTAAGGGTCTTGACAAAGACCTGCATCTT 10480777 >seq6 Length=51880498 Score = 116 bits (128), Expect = 9e-21 Identities = 157/219 (72%), Gaps = 0/219 (0%) Strand=Plus/Minus Query 151886 GAGTCTGAGGACAAGATGAAGAGTAGACTCTTTTTGGATGTTGTAATCGGCTAAAGTTCT 151945 |||||| || || || || ||||| ||||| || || |||||||| || | | ||||| Sbjct 32416399 GAGTCTCAGCACCAGGTGCAGAGTGGACTCCTTCTGAATGTTGTAGTCAGATGAAGTTTG 32416340 Query 151946 CCCATCTTCTAGGCTTTTCCCGGCGAAGATAAGCCTCTGCTGGTCCGCCGAGATTCCTTC 152005 |||||||| || || || || ||||| | || ||||| |||| | |||||||| Sbjct 32416339 GCCATCTTCCAGCTGCTTGCCAGCAAAGATCAATCTTTGCTGATCCGGAGGAATTCCTTC 32416280 Query 152006 CTTTTCTTGAATTTTTTGTTTGACAGTCTCTACGCTGTCTGAACTCTCTACTTCAAGAGT 152065 ||| || || |||| ||| ||| | |||| | || || |||| | || || || Sbjct 32416279 CTTATCCTGGGTTTTGGCTTTTACATTTTCTATCGTATCCGAGGGCTCTTCCTCTAGGGT 32416220 Query 152066 AATAGTTTTGCCCGTGAGAGTCTTCACGAAGACCTGCAT 152104 || || |||||||| || ||||| ||||||| |||||| Sbjct 32416219 GATGGTCTTGCCCGTAAGGGTCTTTACGAAGATCTGCAT 32416181 Score = 109 bits (120), Expect = 1e-18 Identities = 160/225 (71%), Gaps = 1/225 (0%) Strand=Plus/Minus Query 151883 CCTGAGTCTGAGGACAAGATGAAGAGTAGACTCTTTTTGGATGTTGTAATCGGCTAAAGT 151942 ||| || | |||||| || || || || ||||| || ||||||||||| || | | || Sbjct 47505280 CCTAAGACGGAGGACCAGGTGCAGGGTGGACTCCTTCTGGATGTTGTAGTCAGACAGGGT 47505221 Query 151943 TCTCCCATCTTCTAGGCTTTTCCCGGCGAAGATAAGCCTCTGCTGGTCCGCCGAGATTCC 152002 | |||||||| || || || || ||||| |||||||||||||| | | ||| || Sbjct 47505220 GCGGCCATCTTCCAGCTGCTTGCCTGCAAAGATCAGCCTCTGCTGGTCAGGAGGGATGCC 47505161 Query 152003 TTCCTTTTCTTGAATTTTTTGTTTGACAGTCTCTACGCTGTCTGAACTCTCTACTTCAAG 152062 |||| || | || || || |||||| |||| | | |||| || || || || Sbjct 47505160 TTCC-TTACCTGGATCTTGGCCTTGACATTCTCGATGGTGTCGCTGGGTTCCACCTCCAG 47505102 Query 152063 AGTAATAGTTTTGCCCGTGAGAGTCTTCACGAAGACCTGCATTTT 152107 || || || ||||| || || ||||||||||||| |||||| || Sbjct 47505101 GGTGATGGTCTTGCCGGTCAGGGTCTTCACGAAGATCTGCATCTT 47505057 >seq76 Length=7797616 Score = 114 bits (126), Expect = 3e-20 Identities = 153/213 (72%), Gaps = 0/213 (0%) Strand=Plus/Plus Query 151893 AGGACAAGATGAAGAGTAGACTCTTTTTGGATGTTGTAATCGGCTAAAGTTCTCCCATCT 151952 ||||| || || || || ||||| || ||||||||||| || | | || | || ||| Sbjct 4980825 AGGACCAGGTGCAGGGTGGACTCCTTCTGGATGTTGTAGTCAGACAGGGTGCGGCCGTCT 4980884 Query 151953 TCTAGGCTTTTCCCGGCGAAGATAAGCCTCTGCTGGTCCGCCGAGATTCCTTCCTTTTCT 152012 || || || || || ||||| |||||||||||||| | | ||| |||||||| || Sbjct 4980885 TCCAGCTGCTTGCCTGCAAAGATCAGCCTCTGCTGGTCGGGAGGGATGCCTTCCTTATCC 4980944 Query 152013 TGAATTTTTTGTTTGACAGTCTCTACGCTGTCTGAACTCTCTACTTCAAGAGTAATAGTT 152072 || || || |||||| |||| | | |||| ||| || || || || || || Sbjct 4980945 TGGATCTTGGCCTTGACATTCTCGATGGTGTCGCTGGGCTCCACCTCCAGGGTGATGGTC 4981004 Query 152073 TTGCCCGTGAGAGTCTTCACGAAGACCTGCATT 152105 ||||| || || ||||||||||||| ||||||| Sbjct 4981005 TTGCCAGTCAGGGTCTTCACGAAGATCTGCATT 4981037 >seq67 Length=9509266 Score = 114 bits (126), Expect = 3e-20 Identities = 156/218 (72%), Gaps = 0/218 (0%) Strand=Plus/Minus Query 151887 AGTCTGAGGACAAGATGAAGAGTAGACTCTTTTTGGATGTTGTAATCGGCTAAAGTTCTC 151946 ||||| || || || || ||||| |||| || || ||||||||||| | |||| ||| Sbjct 6398373 AGTCTCAGCACCAGGTGCAGAGTGCACTCCTTCTGAATGTTGTAATCAGATAAACTTCGG 6398314 Query 151947 CCATCTTCTAGGCTTTTCCCGGCGAAGATAAGCCTCTGCTGGTCCGCCGAGATTCCTTCC 152006 |||||||| || || || || ||||| || || ||||| || | | ||||||||| Sbjct 6398313 CCATCTTCCAGCTGCTTGCCAGCAAAGATCAGTCTTTGCTGATCTGGAGGAATTCCTTCC 6398254 Query 152007 TTTTCTTGAATTTTTTGTTTGACAGTCTCTACGCTGTCTGAACTCTCTACTTCAAGAGTA 152066 || || || ||||| || ||| | |||| | || || ||| || || || || Sbjct 6398253 TTATCCTGGATTTTGGCTTATACATTTTCTATTGTATCCGAGGGCTCAACCTCGAGGGTG 6398194 Query 152067 ATAGTTTTGCCCGTGAGAGTCTTCACGAAGACCTGCAT 152104 || || |||||||| || ||||| || |||| |||||| Sbjct 6398193 ATGGTCTTGCCCGTAAGGGTCTTGACAAAGATCTGCAT 6398156 >seq42 Length=18384968 Score = 105 bits (116), Expect = 2e-17 Identities = 151/213 (71%), Gaps = 0/213 (0%) Strand=Plus/Minus Query 151892 GAGGACAAGATGAAGAGTAGACTCTTTTTGGATGTTGTAATCGGCTAAAGTTCTCCCATC 151951 ||| || || || || || |||||||| ||||||||||| |||| | ||| | ||||| Sbjct 13800111 GAGCACCAGGTGCAGCGTGGACTCTTTCTGGATGTTGTAGTCGGACAGAGTGCGACCATC 13800052 Query 151952 TTCTAGGCTTTTCCCGGCGAAGATAAGCCTCTGCTGGTCCGCCGAGATTCCTTCCTTTTC 152011 || || || | ||| ||||| || | ||||||||||| | ||| || ||||| || Sbjct 13800051 CTCCAGCTGCTTGCTGGCAAAGATGAGACGCTGCTGGTCCGGGGGGATGCCCTCCTTGTC 13799992 Query 152012 TTGAATTTTTTGTTTGACAGTCTCTACGCTGTCTGAACTCTCTACTTCAAGAGTAATAGT 152071 || || || ||||| | || | | |||| ||| || || || || || || Sbjct 13799991 CTGGATCTTGGTCTTGACGTTTTCGATGGTGTCGCTGGGCTCCACCTCGAGGGTGATGGT 13799932 Query 152072 TTTGCCCGTGAGAGTCTTCACGAAGACCTGCAT 152104 |||||||| || ||||| ||||||| |||||| Sbjct 13799931 CTTGCCCGTCAGGGTCTTTACGAAGATCTGCAT 13799899 >seq24 Length=26830293 Score = 95.1 bits (104), Expect = 3e-14 Identities = 149/212 (70%), Gaps = 1/212 (0%) Strand=Plus/Minus Query 151893 AGGACAAGATGAAGAGTAGACTCTTTTTGGATGTTGTAATCGGCTAAAGTTCTCCCATCT 151952 ||||| || || || || ||||| || ||||||||||| || | | || |||||| Sbjct 11934354 AGGACCAGGTGCAGGGTGGACTCCTTCTGGATGTTGTAGTCAGACAGGGTGTGGCCATCT 11934295 Query 151953 TCTAGGCTTTTCCCGGCGAAGATAAGCCTCTGCTGGTCCGCCGAGATTCCTTCCTTTTCT 152012 || || || || || ||||| ||||||||||| || | | ||| |||||||| || Sbjct 11934294 TCCAGCTGCTTGCCTGCAAAGATCAGCCTCTGCTGTTCGGGAGGGATGCCTTCCTTATCC 11934235 Query 152013 TGAATTTTTTGTTTGACAGTCTCTACGCTGTCTGAACTCTCTACTTCAAGAGTAATAGTT 152072 || || || |||||| |||| | | | || ||| || || || || || || Sbjct 11934234 TGGATCTTGGCCTTGACATTCTCGATG-TTTCATTGGGCTCCACCTCCAGGGTGATGGTC 11934176 Query 152073 TTGCCCGTGAGAGTCTTCACGAAGACCTGCAT 152104 ||||| || || |||||||| |||| |||||| Sbjct 11934175 TTGCCAGTCAGGGTCTTCACAAAGATCTGCAT 11934144 >seq49 Length=14824766 Score = 91.5 bits (100), Expect = 3e-13 Identities = 142/203 (70%), Gaps = 0/203 (0%) Strand=Plus/Minus Query 151902 TGAAGAGTAGACTCTTTTTGGATGTTGTAATCGGCTAAAGTTCTCCCATCTTCTAGGCTT 151961 || || || ||||| || ||||||||||| || | | || | || ||||| || Sbjct 11086298 TGCAGGGTGGACTCCTTCTGGATGTTGTAGTCAGACAGGGTGCGTCCGTCTTCCAGCTGC 11086239 Query 151962 TTCCCGGCGAAGATAAGCCTCTGCTGGTCCGCCGAGATTCCTTCCTTTTCTTGAATTTTT 152021 || || || ||||| |||||||||||||| | | ||| ||||| || || || || || Sbjct 11086238 TTGCCTGCAAAGATCAGCCTCTGCTGGTCGGGAGGGATGCCTTCTTTATCCTGGATCTTG 11086179 Query 152022 TGTTTGACAGTCTCTACGCTGTCTGAACTCTCTACTTCAAGAGTAATAGTTTTGCCCGTG 152081 |||||| | || | | |||| || || || || || || || ||||| || Sbjct 11086178 GCCTTGACATTTTCGATGGTGTCGCTGGGTTCCACCTCCAGGGTGATGGTCTTGCCAGTC 11086119 Query 152082 AGAGTCTTCACGAAGACCTGCAT 152104 || ||||||||||||| |||||| Sbjct 11086118 AGGGTCTTCACGAAGATCTGCAT 11086096 >seq40 Length=19049039 Score = 87.8 bits (96), Expect = 4e-12 Identities = 147/213 (69%), Gaps = 0/213 (0%) Strand=Plus/Minus Query 151883 CCTGAGTCTGAGGACAAGATGAAGAGTAGACTCTTTTTGGATGTTGTAATCGGCTAAAGT 151942 ||| || | |||||| || || || || ||||| || ||||||||||| || | | || Sbjct 15841340 CCTAAGACGGAGGACCAGGTGCAGGGTGGACTCCTTCTGGATGTTGTAGTCAGACAGGGT 15841281 Query 151943 TCTCCCATCTTCTAGGCTTTTCCCGGCGAAGATAAGCCTCTGCTGGTCCGCCGAGATTCC 152002 | ||||| || || || || ||||| |||||||||||||| | | ||| || Sbjct 15841280 GCGGTTGTCTTCCAGCTGCTTGCCTGCAAAGATCAGCCTCTGCTGGTCGGGAGGGATGCC 15841221 Query 152003 TTCCTTTTCTTGAATTTTTTGTTTGACAGTCTCTACGCTGTCTGAACTCTCTACTTCAAG 152062 |||||| || || || || |||||| |||| | | |||| ||| || || || Sbjct 15841220 TTCCTTATCCTGGATCTTGGCCTTGACATTCTCGATGGTGTCGCTGGGCTCGACCTCCAG 15841161 Query 152063 AGTAATAGTTTTGCCCGTGAGAGTCTTCACGAA 152095 || || || ||||| || || ||||| || || Sbjct 15841160 GGTGATGGTCTTGCCGGTTAGGGTCTTGACAAA 15841128 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1153666742928491