Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Ochotona_20princeps_20[refseq_20GCF_5F000292845.1_202012-08-27] 10,421 sequences; 2,229,840,584 total letters Query= NC_032255.1 Length=112536 Score E Sequences producing significant alignments: (Bits) Value seq76 143 2e-29 seq42 143 2e-29 seq49 141 7e-29 seq6 134 1e-26 seq67 129 4e-25 seq17 122 6e-23 seq40 118 8e-22 seq24 118 8e-22 seq3 109 4e-19 seq30 98.7 7e-16 seq65 93.3 3e-14 seq26 87.8 1e-12 >seq76 Length=7797616 Score = 143 bits (158), Expect = 2e-29 Identities = 157/209 (75%), Gaps = 0/209 (0%) Strand=Plus/Plus Query 44129 ACCAGGTGAAGCGTGCTCTCCTTTTGGATGTTGTAATCGGCGAGTTGGCGCTCGTCGTCC 44188 |||||||| || ||| |||||| ||||||||||| || | || ||| |||| ||| Sbjct 4980828 ACCAGGTGCAGGGTGGACTCCTTCTGGATGTTGTAGTCAGACAGGGTGCGGCCGTCTTCC 4980887 Query 44189 AGCTGCTTCCCGGCAAAGATCAAACGCTGCTGATCTGAAGGCACACCTTCCTTTTCCGTT 44248 |||||||| || |||||||||| | |||||| || | ||| | |||||||| ||| Sbjct 4980888 AGCTGCTTGCCTGCAAAGATCAGCCTCTGCTGGTCGGGAGGGATGCCTTCCTTATCCTGG 4980947 Query 44249 ATCTTCTGCTTCAATGTTCCTATGGTGTCGGCGGATTCCACCTCCACCGTAATCGTCTTT 44308 ||||| ||| | | | ||||||||| || |||||||||| || || ||||| Sbjct 4980948 ATCTTGGCCTTGACATTCTCGATGGTGTCGCTGGGCTCCACCTCCAGGGTGATGGTCTTG 4981007 Query 44309 CCCGTGAGGGTCTTCACGAAGATTTGCAT 44337 || || ||||||||||||||||| ||||| Sbjct 4981008 CCAGTCAGGGTCTTCACGAAGATCTGCAT 4981036 >seq42 Length=18384968 Score = 143 bits (158), Expect = 2e-29 Identities = 160/214 (75%), Gaps = 0/214 (0%) Strand=Plus/Minus Query 44128 CACCAGGTGAAGCGTGCTCTCCTTTTGGATGTTGTAATCGGCGAGTTGGCGCTCGTCGTC 44187 ||||||||| |||||| ||| || ||||||||||| |||| || ||| | || || Sbjct 13800108 CACCAGGTGCAGCGTGGACTCTTTCTGGATGTTGTAGTCGGACAGAGTGCGACCATCCTC 13800049 Query 44188 CAGCTGCTTCCCGGCAAAGATCAAACGCTGCTGATCTGAAGGCACACCTTCCTTTTCCGT 44247 ||||||||| | ||||||||| | ||||||||| || | || | || ||||| ||| Sbjct 13800048 CAGCTGCTTGCTGGCAAAGATGAGACGCTGCTGGTCCGGGGGGATGCCCTCCTTGTCCTG 13799989 Query 44248 TATCTTCTGCTTCAATGTTCCTATGGTGTCGGCGGATTCCACCTCCACCGTAATCGTCTT 44307 ||||| ||| | || | ||||||||| || |||||||| | || || ||||| Sbjct 13799988 GATCTTGGTCTTGACGTTTTCGATGGTGTCGCTGGGCTCCACCTCGAGGGTGATGGTCTT 13799929 Query 44308 TCCCGTGAGGGTCTTCACGAAGATTTGCATGATG 44341 ||||| |||||||| |||||||| |||||| || Sbjct 13799928 GCCCGTCAGGGTCTTTACGAAGATCTGCATGGTG 13799895 >seq49 Length=14824766 Score = 141 bits (156), Expect = 7e-29 Identities = 155/206 (75%), Gaps = 0/206 (0%) Strand=Plus/Minus Query 44133 GGTGAAGCGTGCTCTCCTTTTGGATGTTGTAATCGGCGAGTTGGCGCTCGTCGTCCAGCT 44192 |||| || ||| |||||| ||||||||||| || | || ||| |||| ||||||| Sbjct 11086300 GGTGCAGGGTGGACTCCTTCTGGATGTTGTAGTCAGACAGGGTGCGTCCGTCTTCCAGCT 11086241 Query 44193 GCTTCCCGGCAAAGATCAAACGCTGCTGATCTGAAGGCACACCTTCCTTTTCCGTTATCT 44252 |||| || |||||||||| | |||||| || | ||| | ||||| || ||| |||| Sbjct 11086240 GCTTGCCTGCAAAGATCAGCCTCTGCTGGTCGGGAGGGATGCCTTCTTTATCCTGGATCT 11086181 Query 44253 TCTGCTTCAATGTTCCTATGGTGTCGGCGGATTCCACCTCCACCGTAATCGTCTTTCCCG 44312 | ||| | || | ||||||||| || ||||||||||| || || ||||| || | Sbjct 11086180 TGGCCTTGACATTTTCGATGGTGTCGCTGGGTTCCACCTCCAGGGTGATGGTCTTGCCAG 11086121 Query 44313 TGAGGGTCTTCACGAAGATTTGCATG 44338 | ||||||||||||||||| |||||| Sbjct 11086120 TCAGGGTCTTCACGAAGATCTGCATG 11086095 >seq6 Length=51880498 Score = 134 bits (148), Expect = 1e-26 Identities = 156/209 (75%), Gaps = 1/209 (0%) Strand=Plus/Minus Query 44129 ACCAGGTGAAGCGTGCTCTCCTTTTGGATGTTGTAATCGGCGAGTTGGCGCTCGTCGTCC 44188 |||||||| || ||| |||||| ||||||||||| || | || ||| | || ||| Sbjct 47505267 ACCAGGTGCAGGGTGGACTCCTTCTGGATGTTGTAGTCAGACAGGGTGCGGCCATCTTCC 47505208 Query 44189 AGCTGCTTCCCGGCAAAGATCAAACGCTGCTGATCTGAAGGCACACCTTCCTTTTCCGTT 44248 |||||||| || |||||||||| | |||||| || | ||| | |||||| || || Sbjct 47505207 AGCTGCTTGCCTGCAAAGATCAGCCTCTGCTGGTCAGGAGGGATGCCTTCC-TTACCTGG 47505149 Query 44249 ATCTTCTGCTTCAATGTTCCTATGGTGTCGGCGGATTCCACCTCCACCGTAATCGTCTTT 44308 ||||| ||| | | | ||||||||| || ||||||||||| || || ||||| Sbjct 47505148 ATCTTGGCCTTGACATTCTCGATGGTGTCGCTGGGTTCCACCTCCAGGGTGATGGTCTTG 47505089 Query 44309 CCCGTGAGGGTCTTCACGAAGATTTGCAT 44337 || || ||||||||||||||||| ||||| Sbjct 47505088 CCGGTCAGGGTCTTCACGAAGATCTGCAT 47505060 Score = 116 bits (128), Expect = 3e-21 Identities = 160/220 (73%), Gaps = 4/220 (2%) Strand=Plus/Minus Query 44120 AGTCTCAACACCAGGTGAAGCGTGCTCTCCTTTTGGATGTTGTAATCGGCG--AGTTGGC 44177 ||||||| ||||||||| || ||| |||||| || |||||||| || | |||| | Sbjct 32416398 AGTCTCAGCACCAGGTGCAGAGTGGACTCCTTCTGAATGTTGTAGTCAGATGAAGTTTG- 32416340 Query 44178 GCTCGTCGTCCAGCTGCTTCCCGGCAAAGATCAAACGCTGCTGATCTGAAGGCACACCTT 44237 || | || ||||||||||| || ||||||||||| | |||||||| | ||| | |||| Sbjct 32416339 GC-CATCTTCCAGCTGCTTGCCAGCAAAGATCAATCTTTGCTGATCCGGAGGAATTCCTT 32416281 Query 44238 CCTTTTCCGTTATCTTCTGCTTCAATGTTCCTATGGTGTCGGCGGATTCCACCTCCACCG 44297 |||| ||| | || || | || |||| || || | || || |||| | | Sbjct 32416280 CCTTATCCTGGGTTTTGGCTTTTACATTTTCTATCGTATCCGAGGGCTCTTCCTCTAGGG 32416221 Query 44298 TAATCGTCTTTCCCGTGAGGGTCTTCACGAAGATTTGCAT 44337 | || ||||| ||||| |||||||| |||||||| ||||| Sbjct 32416220 TGATGGTCTTGCCCGTAAGGGTCTTTACGAAGATCTGCAT 32416181 >seq67 Length=9509266 Score = 129 bits (142), Expect = 4e-25 Identities = 162/220 (74%), Gaps = 2/220 (1%) Strand=Plus/Minus Query 44119 CAGTCTCAACACCAGGTGAAGCGTGCTCTCCTTTTGGATGTTGTAATCGGCGAGTTGGCG 44178 |||||||| ||||||||| || |||| |||||| || ||||||||||| | | || Sbjct 6398374 CAGTCTCAGCACCAGGTGCAGAGTGCACTCCTTCTGAATGTTGTAATCAGATAAACTTCG 6398315 Query 44179 CTCGTCGTCCAGCTGCTTCCCGGCAAAGATCAAACGCTGCTGATCTGAAGGCACACCTTC 44238 | || ||||||||||| || |||||||||| | |||||||||| ||| | ||||| Sbjct 6398314 GCCATCTTCCAGCTGCTTGCCAGCAAAGATCAGTCTTTGCTGATCTGGAGGAATTCCTTC 6398255 Query 44239 CTTTTCCGTTATCTTCTGCTT-CAATGTTCCTATGGTGTCGGCGGATTCCACCTCCACCG 44297 ||| ||| || || |||| | || |||| || || | || || ||||| | | Sbjct 6398254 CTTATCCTGGAT-TTTGGCTTATACATTTTCTATTGTATCCGAGGGCTCAACCTCGAGGG 6398196 Query 44298 TAATCGTCTTTCCCGTGAGGGTCTTCACGAAGATTTGCAT 44337 | || ||||| ||||| |||||||| || ||||| ||||| Sbjct 6398195 TGATGGTCTTGCCCGTAAGGGTCTTGACAAAGATCTGCAT 6398156 >seq17 Length=35549867 Score = 122 bits (134), Expect = 6e-23 Identities = 153/210 (73%), Gaps = 0/210 (0%) Strand=Plus/Minus Query 44129 ACCAGGTGAAGCGTGCTCTCCTTTTGGATGTTGTAATCGGCGAGTTGGCGCTCGTCGTCC 44188 |||||||| || ||| |||||||||||||||||| || | || ||| | || ||| Sbjct 30593100 ACCAGGTGCAGGGTGGACTCCTTTTGGATGTTGTAGTCAGACAGGGTGCGGCCATCTTCC 30593041 Query 44189 AGCTGCTTCCCGGCAAAGATCAAACGCTGCTGATCTGAAGGCACACCTTCCTTTTCCGTT 44248 |||||||| || |||||||||| | || ||| || | ||| | |||||||| ||| Sbjct 30593040 AGCTGCTTGCCTGCAAAGATCAGCCTCTTCTGGTCGGGAGGGATGCCTTCCTTATCCTGG 30592981 Query 44249 ATCTTCTGCTTCAATGTTCCTATGGTGTCGGCGGATTCCACCTCCACCGTAATCGTCTTT 44308 ||||| ||| | | | ||||||||| | || ||||||| || || ||||| Sbjct 30592980 ATCTTGGCCTTGACATTCTCGATGGTGTCGCTGTGCTCAACCTCCAGGGTGATGGTCTTG 30592921 Query 44309 CCCGTGAGGGTCTTCACGAAGATTTGCATG 44338 | || ||||||||||| ||||| |||||| Sbjct 30592920 CTGGTCAGGGTCTTCACAAAGATCTGCATG 30592891 Score = 102 bits (112), Expect = 6e-17 Identities = 158/223 (71%), Gaps = 2/223 (1%) Strand=Plus/Plus Query 44120 AGTCTCAACACCAGGTGAAGCGTGCTCTCCTTTTGGATGTTGTAATCGGCGAGTTGGCGC 44179 ||||||| |||||| || || ||| |||||| || | |||||| || | | || Sbjct 25101816 AGTCTCAGCACCAGATGCAGAGTGGACTCCTTCTGAAGGTTGTAGTCAGATAAACTTCGG 25101875 Query 44180 TCGTCGTCCAGCTGCTTCCCGGCAAAGATCAAACGCTGCTGATCTGAAGGCACACCTTCC 44239 | || ||||||||||| || |||||| ||| | |||||||| | ||| | |||||| Sbjct 25101876 CCATCTTCCAGCTGCTTGCCAGCAAAGGTCAGTCTTTGCTGATCCGGAGGAATGCCTTCC 25101935 Query 44240 TTTTCCGTTATCTTCTGCTTCA-ATGTTCCTATGGTGTCGGCGGATTCCACCTCCACCGT 44298 |||||| || || || | ||||| |||| || || | || || | ||| | || Sbjct 25101936 TTTTCCTGGATTTTGGCTTTTACATGTT-CTATCGTATCTGAGGGCTCAATCTCAAGGGT 25101994 Query 44299 AATCGTCTTTCCCGTGAGGGTCTTCACGAAGATTTGCATGATG 44341 || ||||| || || || ||||| |||||||| ||||| ||| Sbjct 25101995 GATGGTCTTGCCTGTAAGAGTCTTGACGAAGATCTGCATCATG 25102037 >seq40 Length=19049039 Score = 118 bits (130), Expect = 8e-22 Identities = 146/200 (73%), Gaps = 0/200 (0%) Strand=Plus/Minus Query 44129 ACCAGGTGAAGCGTGCTCTCCTTTTGGATGTTGTAATCGGCGAGTTGGCGCTCGTCGTCC 44188 |||||||| || ||| |||||| ||||||||||| || | || ||| | ||| ||| Sbjct 15841327 ACCAGGTGCAGGGTGGACTCCTTCTGGATGTTGTAGTCAGACAGGGTGCGGTTGTCTTCC 15841268 Query 44189 AGCTGCTTCCCGGCAAAGATCAAACGCTGCTGATCTGAAGGCACACCTTCCTTTTCCGTT 44248 |||||||| || |||||||||| | |||||| || | ||| | |||||||| ||| Sbjct 15841267 AGCTGCTTGCCTGCAAAGATCAGCCTCTGCTGGTCGGGAGGGATGCCTTCCTTATCCTGG 15841208 Query 44249 ATCTTCTGCTTCAATGTTCCTATGGTGTCGGCGGATTCCACCTCCACCGTAATCGTCTTT 44308 ||||| ||| | | | ||||||||| || || ||||||| || || ||||| Sbjct 15841207 ATCTTGGCCTTGACATTCTCGATGGTGTCGCTGGGCTCGACCTCCAGGGTGATGGTCTTG 15841148 Query 44309 CCCGTGAGGGTCTTCACGAA 44328 || || |||||||| || || Sbjct 15841147 CCGGTTAGGGTCTTGACAAA 15841128 >seq24 Length=26830293 Score = 118 bits (130), Expect = 8e-22 Identities = 160/222 (72%), Gaps = 1/222 (0%) Strand=Plus/Minus Query 44117 CTCAGTCTCAACACCAGGTGAAGCGTGCTCTCCTTTTGGATGTTGTAATCGGCGAGTTGG 44176 ||||| | || |||||||| || ||| |||||| ||||||||||| || | || | Sbjct 11934363 CTCAGGCGCAGGACCAGGTGCAGGGTGGACTCCTTCTGGATGTTGTAGTCAGACAGGGTG 11934304 Query 44177 CGCTCGTCGTCCAGCTGCTTCCCGGCAAAGATCAAACGCTGCTGATCTGAAGGCACACCT 44236 | | || ||||||||||| || |||||||||| | |||||| || | ||| | ||| Sbjct 11934303 TGGCCATCTTCCAGCTGCTTGCCTGCAAAGATCAGCCTCTGCTGTTCGGGAGGGATGCCT 11934244 Query 44237 TCCTTTTCCGTTATCTTCTGCTTCAATGTTCCTATGGTGTCGGCGGATTCCACCTCCACC 44296 ||||| ||| ||||| ||| | | | || || || || |||||||||| Sbjct 11934243 TCCTTATCCTGGATCTTGGCCTTGACATTCTCGAT-GTTTCATTGGGCTCCACCTCCAGG 11934185 Query 44297 GTAATCGTCTTTCCCGTGAGGGTCTTCACGAAGATTTGCATG 44338 || || ||||| || || ||||||||||| ||||| |||||| Sbjct 11934184 GTGATGGTCTTGCCAGTCAGGGTCTTCACAAAGATCTGCATG 11934143 >seq3 Length=63406555 Score = 109 bits (120), Expect = 4e-19 Identities = 150/210 (71%), Gaps = 0/210 (0%) Strand=Plus/Plus Query 44129 ACCAGGTGAAGCGTGCTCTCCTTTTGGATGTTGTAATCGGCGAGTTGGCGCTCGTCGTCC 44188 |||| ||| || ||| ||| || ||||||||||| | | || || | ||| || Sbjct 63015601 ACCAAGTGCAGGGTGGACTCTTTCTGGATGTTGTAGACAGACAGGGTACGGTTGTCTCCC 63015660 Query 44189 AGCTGCTTCCCGGCAAAGATCAAACGCTGCTGATCTGAAGGCACACCTTCCTTTTCCGTT 44248 |||||| | || ||||||||||| | |||||| || | ||| | |||||||| ||| Sbjct 63015661 AGCTGCCTGCCTGCAAAGATCAACCTCTGCTGGTCAGGAGGGATGCCTTCCTTATCCTGG 63015720 Query 44249 ATCTTCTGCTTCAATGTTCCTATGGTGTCGGCGGATTCCACCTCCACCGTAATCGTCTTT 44308 |||||| ||| | | ||||||||||| || | |||||| || | ||||| Sbjct 63015721 ATCTTCGCCTTGACATTCTCTATGGTGTCGCTGGGCTTGACCTCCGGGGTGGTGGTCTTG 63015780 Query 44309 CCCGTGAGGGTCTTCACGAAGATTTGCATG 44338 || || | ||||||||||||||| |||||| Sbjct 63015781 CCGGTCAAGGTCTTCACGAAGATCTGCATG 63015810 >seq30 Length=25365230 Score = 98.7 bits (108), Expect = 7e-16 Identities = 151/214 (71%), Gaps = 15/214 (7%) Strand=Plus/Plus Query 44128 CACCAGGTGAAGCGTGCTCTCCTTTTGGATGTTGTAATCGGCGAGTTGGCGCTCGTCGTC 44187 ||||||||| |||||| ||| | |||||||| ||| ||| || || || Sbjct 16538371 CACCAGGTGCAGCGTGGACTCTCTCTGGATGTTA---------AGT--GCGGTCATCCTC 16538419 Query 44188 CAGCTGCTTCCCGGCAAAGATCAAACGCTGCTGATCTGAAGGCACACCTTCCTTTTCCGT 44247 || |||||| |||||||||||| ||||||||| || | || | || || | ||| Sbjct 16538420 CAACTGCTTGTCGGCAAAGATCAGACGCTGCTGGTCCGGGGGGATGCCCTCTTCGTCCTG 16538479 Query 44248 TATCTTCTGCTT---CAATGTTCCT-ATGGTGTCGGCGGATTCCACCTCCACCGTAATCG 44303 |||||| ||| || ||| | | ||||||| || |||||||| | |||||| | Sbjct 16538480 GATCTTCGCCTTGAAAAACGTTTTTGAAGGTGTCGCTGGGCTCCACCTCAAGCGTAATGG 16538539 Query 44304 TCTTTCCCGTGAGGGTCTTCACGAAGATTTGCAT 44337 | || || || |||||||||| |||||| ||||| Sbjct 16538540 TGTTGCCTGTCAGGGTCTTCATGAAGATCTGCAT 16538573 >seq65 Length=10584338 Score = 93.3 bits (102), Expect = 3e-14 Identities = 157/221 (71%), Gaps = 6/221 (3%) Strand=Plus/Minus Query 44120 AGTCTCAACACCAGGTGAAGCGTGCTCTCCTTTTGGATGTTGTAATCGGCGA--GTTGGC 44177 ||||||| |||||| || || || |||||| || |||||||| || | | ||| | Sbjct 10480997 AGTCTCAGCACCAGATGCAGAGTAGACTCCTTCTGAATGTTGTAGTCCGATAAAGTTCG- 10480939 Query 44178 GCTCGTCGTCCAGCTGCTTCCCGGCAAAGATCAAACGCTGCTGATCTGAAGGCACACCTT 44237 || | | ||||||||||| || |||||||||| | |||||||| ||| | |||| Sbjct 10480938 GC-CATATTCCAGCTGCTTGCCAGCAAAGATCAGTCTTTGCTGATCCAGAGGAATTCCTT 10480880 Query 44238 CCTTTTCCGTTATCTTCTGCTTCAATG-TTCCTATGGTGTCGGCGGATTCCACCTCCACC 44296 |||| ||| | ||| |||| | | || |||| || || | || || ||||| | Sbjct 10480879 CCTTATCC-TGGACTTTGGCTTTTACGTTTTCTATCGTATCCGAGGGCTCAACCTCGAGG 10480821 Query 44297 GTAATCGTCTTTCCCGTGAGGGTCTTCACGAAGATTTGCAT 44337 || || ||||| || || |||||||| || |||| ||||| Sbjct 10480820 GTGATGGTCTTGCCTGTAAGGGTCTTGACAAAGACCTGCAT 10480780 >seq26 Length=25362064 Score = 87.8 bits (96), Expect = 1e-12 Identities = 132/185 (71%), Gaps = 2/185 (1%) Strand=Plus/Minus Query 44111 CCCCCTCTCAGTCTCAACACCAGGTGAAGCGTGCTCTCCTTTTGGATGTTGTAATCGG-C 44169 || || |||| | || |||||||| || ||| || ||| ||||||||||| || | | Sbjct 23898038 CCTCCCCTCAAGCGCAGGACCAGGTGCAGGGTGGACTTCTTCTGGATGTTGTAGTCAGAC 23897979 Query 44170 GAGTTGGCGCTCGTCGTCCAGCTGCTTCCCGGCAAAGATCAAACGCTGCTGATCTGAAGG 44229 || || || | || ||||||||||| ||||||||||||| | |||||| || | ||| Sbjct 23897978 AAGGTGTGGC-CATCTTCCAGCTGCTTGCCGGCAAAGATCAGCCTCTGCTGGTCAGGAGG 23897920 Query 44230 CACACCTTCCTTTTCCGTTATCTTCTGCTTCAATGTTCCTATGGTGTCGGCGGATTCCAC 44289 |||||||| || ||| | ||| | | | ||||||||| || |||||| Sbjct 23897919 GCTGCCTTCCTTATCTTGGATCATGGCCTTGACATTCTCGATGGTGTCGCTGGGTTCCAC 23897860 Query 44290 CTCCA 44294 ||||| Sbjct 23897859 CTCCA 23897855 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 359944679081757