Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Ochotona_20princeps_20[refseq_20GCF_5F000292845.1_202012-08-27] 10,421 sequences; 2,229,840,584 total letters Query= NC_033176.1 Length=224064 Score E Sequences producing significant alignments: (Bits) Value seq4 168 1e-36 seq63 122 1e-22 >seq4 Length=59374630 Score = 168 bits (186), Expect = 1e-36 Identities = 209/286 (73%), Gaps = 0/286 (0%) Strand=Plus/Minus Query 8300 AACGGACACCCCTTGACGTTGCTACAGACTAGAGACTGAATAGTTGCGCTCTTGACGATC 8359 || ||||| ||||| || ||| | |||| || |||||| | || | ||||| || Sbjct 56649816 AAGGGACAGCCCTTCACATTGTTGCAGATGAGGCTCTGAATGGAGGCAGTGTTGACAATT 56649757 Query 8360 CCGAACCCCACGTCTCCGCCGAAGGTGCTGGGCTTCCAGTACCCCGGGGAGCAGATGACG 8419 ||| ||||| ||||| || || ||||| ||||||||||| ||||| ||||| Sbjct 56649756 TTGAAGCCCACTTCTCCACCAAACGTGCTTGGCTTCCAGTAGTTAGGGGAACAGATAGGA 56649697 Query 8420 TTCGCCATGAGGCCTTTGAGGGAGAACGGAGCCCCCAACTCGAGAATGCTCTCACCGAAG 8479 || ||||||||||||| |||||||| |||||||||| || | ||| |||| || ||| Sbjct 56649696 TTACCCATGAGGCCTTTCAGGGAGAATGGAGCCCCCATTTCTACCATGGTCTCCCCAAAG 56649637 Query 8480 ATGGCGTTGGGACGGGGCTTTTCCACCAAGAATCCGGTGTACAGCTCCACAGCCTCGACG 8539 ||||||| ||||| || ||||||||| | | | |||||||||||| || || | | Sbjct 56649636 ATGGCGTCTGGACGAGGTCTTTCCACCAGAAGGGCAGGGTACAGCTCCACTGCATCAATG 56649577 Query 8540 TCTCCGTAAAGGGCCCTGAGTTCGGCAGCGATCTCCTTTTCTCCTG 8585 || || || || || | || ||||| |||||||| ||||||| Sbjct 56649576 TCGCCATAGAGCGCTTCCAACTCCGCAGCCATCTCCTTCTCTCCTG 56649531 Score = 136 bits (150), Expect = 6e-27 Identities = 168/230 (73%), Gaps = 0/230 (0%) Strand=Plus/Minus Query 9256 GTCTGGAACAGTTGCTCGTCACTCCATTCTGGATGTTCTTGTTTCAGAACATCGCACACC 9315 |||||||| | |||||||| |||||| ||||| || || || || || |||||||| Sbjct 56648179 GTCTGGAATAACTGCTCGTCGTCCCATTCGGGATGCTCCTGCTTGAGCACGTCGCACACT 56648120 Query 9316 CTGTTGTGTTCCCTGAGCCAGATAGTGGCGTACATCATGAGCCCAGGTACCAGGCCAAAA 9375 | ||| || |||| | |||||| |||||||||||||| || ||||| ||||| ||||| Sbjct 56648119 CGGTTATGCTCCCGTAACCAGATTGTGGCGTACATCATCAGGCCAGGCACCAGACCAAAC 56648060 Query 9376 GCCTCTTGACCGACAGCCAGACGCATGTTTTCGGGCACTTCGGGAGGATAGATCATGTGC 9435 | || || || ||||| | |||| | || || || | ||| || |||| ||| | | Sbjct 56648059 ACTTCCTGGCCCACAGCGAAGCGCAGCTGCTCAGGGACGTGGGGCGGGTAGAACATCTCC 56648000 Query 9436 ACCTGGACGTCTTTGACCGAGGGGGGATACATTTCACCGTCAATCATCTG 9485 |||| |||| |||| | ||| || |||| ||| || || || | ||| Sbjct 56647999 GCCTGTGTGTCTCTGACTGTGGGAGGGTACACTTCTCCATCGATGACCTG 56647950 Score = 114 bits (126), Expect = 2e-20 Identities = 120/158 (76%), Gaps = 0/158 (0%) Strand=Plus/Minus Query 9649 TCTTACCCCATGTCCCAGTCCTTTAGTGAAGGCCGGGCCTCGCGCCAAATCAGTCCTAAA 9708 ||| |||||||||||||||||| | ||||| || || || ||| | ||| ||| | || Sbjct 56647205 TCTCACCCCATGTCCCAGTCCTCTGGTGAAAGCTGGTCCCCGCTTCTGATCCGTCTTGAA 56647146 Query 9709 AAACTGGTGCGTGAAATGTTGGCCAAAAAAGGCAAACATTAAGTTGGTGCCCTGGGGATC 9768 ||||||||||||||| || || |||| ||||| ||||| | ||| |||||||| || || Sbjct 56647145 AAACTGGTGCGTGAAGTGCTGAGCAAAGAAGGCGAACATCATGTTTGTGCCCTGCGGGTC 56647086 Query 9769 GGGAGTGAAGGTCCTCCGAAGAAGAGTTTTTTCCACAA 9806 || |||| | || | || ||| ||| ||||||| Sbjct 56647085 AGGGATGAACTTTCTTCTCAGGAGAACTTTCTCCACAA 56647048 Score = 113 bits (124), Expect = 6e-20 Identities = 207/299 (69%), Gaps = 6/299 (2%) Strand=Plus/Minus Query 8941 ACACTTACTCGGCCGGCTATTTGTTTCGTGAACGATTCTACTAGCTGGGTAATGCCGTGA 9000 ||||| || | ||| ||||| || || ||||| || | || | ||| |||| ||||| Sbjct 56648785 ACACTCACCCTGCCAGCTATCTGCTTGGTGAATGACTGGACAAACTGCGTAAGTCCGTGC 56648726 Query 9001 GTCATGAGTATGGAATTGTTGTAGACGAA--GTTAACGTAGTCATACTTTGTTTTATCAA 9058 || || ||||| |||||||||| || ||| | |||| ||||| | ||||| Sbjct 56648725 TCCAGCAGGATGGAGTTGTTGTAGAGAAACTGTTGA--TAGTTGTACTTCTGGTCATCAA 56648668 Query 9059 TCTCAAATGCATCCGGCATGAGAGAATGCCAGTGATACAACATGTTAAACTCGGAAAATA 9118 | | ||| ||||| |||| ||| | |||||||||||| | |||| ||||| || | Sbjct 56648667 TGTGAAAGGCATCGGGCAGGAGTGGATGCCAGTGATAGAGTGTGTTGAACTCAGAGGCAA 56648608 Query 9119 TACGATTTTGGTACTGGAACGAAGTACCAAAGAGCAGTTCGGGCTTAAACAGCAGCTGAA 9178 | || || |||||||||||| | || ||||| || || | |||| || | | Sbjct 56648607 TCCGGTTCTGGTACTGGAACTGCTGGCTGAAAAGCAGCTCTGGGTCAAACTTTAGTTTGA 56648548 Query 9179 AATGGTAGCCGCTGAGCTGCTGAACGTATTGCGTC-ACGATAATGTTGATGGTTTCCCC 9236 | || |||||||| | ||||| ||||| | | || | | ||| |||||||| || || Sbjct 56648547 AGTGATAGCCGCTCAAGTGCTGCACGTAGT-CTTCAATCACAATCTTGATGGTCTCTCC 56648490 Score = 93.3 bits (102), Expect = 6e-14 Identities = 111/151 (74%), Gaps = 0/151 (0%) Strand=Plus/Minus Query 9909 CACCTTTGACCCCAACAGGAGTTGGACAATCGTGAGGAACCGGAGGTAGAATCCTTGCGT 9968 ||||||| || || || || ||||| || |||| || || ||||| | |||| || Sbjct 56646718 CACCTTTCACTCCCACGGGGGTTGGGCAGTCGTCAGCCACGGGAGGCAAGGCTCTTGTGT 56646659 Query 9969 AATAGGAGAGATTGGAGAAAGCTTCCCAGCTTGGGTATTCGTAGTCCGCGTTGTATATGG 10028 | ||||| ||||||||||| ||||||||| | ||| |||||| | | |||||| | | Sbjct 56646658 AGTAGGACAGATTGGAGAAGGCTTCCCAGTTCTTGTAGCCGTAGTGCACATTGTATGTTG 56646599 Query 10029 GAGGGCTGTCAATCAAATCGGATCTACCTGA 10059 | || ||||| |||| || ||||| |||| Sbjct 56646598 GCGGACTGTCGATCAGATGTGATCTGGCTGA 56646568 Score = 89.7 bits (98), Expect = 7e-13 Identities = 109/148 (74%), Gaps = 3/148 (2%) Strand=Plus/Minus Query 10387 CTTACGAGTTGTGCAGTCATGGTCGTAGAAACCCGTATGCGTGCAATCGCATTTGTACTG 10446 |||||| || | ||||| | ||||||| ||||| ||||| ||||| || ||||| Sbjct 56645715 CTTACGCGTCGAGCAGTTTTCTCCGTAGAATCCCGTCCTGGTGCAGTCGCACTTATACTG 56645656 Query 10447 ATGGAACCCCACGGTCATGCAGATGCCTCTGTTTTGACACGGATGGGAGCAACAAGGGTT 10506 | ||||||| |||||| || | |||| ||||||||| || | ||| || |||||||| Sbjct 56645655 GTCAAACCCCATGGTCATACACACGCCTTGGTTTTGACATGGGTTGGAACAGCAAGGGTT 56645596 Query 10507 GGCT---ACGATGCGAAGAGAGAGAGAA 10531 |||| | || || | || ||||| || Sbjct 56645595 GGCTGCAAGGAAGCCAGGACAGAGACAA 56645568 >seq63 Length=10623516 Score = 122 bits (134), Expect = 1e-22 Identities = 169/237 (71%), Gaps = 0/237 (0%) Strand=Plus/Plus Query 8349 TCTTGACGATCCCGAACCCCACGTCTCCGCCGAAGGTGCTGGGCTTCCAGTACCCCGGGG 8408 ||||||||| ||| ||||| || || || || ||||| |||||||||||| | || | Sbjct 10348411 TCTTGACGAGGTTGAAGCCCACCTCACCACCAAACGTGCTTGGCTTCCAGTACTCTGGAG 10348470 Query 8409 AGCAGATGACGTTCGCCATGAGGCCTTTGAGGGAGAACGGAGCCCCCAACTCGAGAATGC 8468 | |||||| |||| | | ||| || |||||||| || || ||||| | ||||| |||| Sbjct 10348471 AACAGATGGGGTTCCCTAAGAGACCCTTGAGGGAAAAGGGTGCCCCAATCTCGATCATGC 10348530 Query 8469 TCTCACCGAAGATGGCGTTGGGACGGGGCTTTTCCACCAAGAATCCGGTGTACAGCTCCA 8528 |||| |||||||||| ||| || || ||| || | | || || | ||| | |||| Sbjct 10348531 TCTCCCCGAAGATGGAGTTCGGTTGGCACTTCTCGAGAAGCAACCCTGGGTAGAATTCCA 10348590 Query 8529 CAGCCTCGACGTCTCCGTAAAGGGCCCTGAGTTCGGCAGCGATCTCCTTTTCTCCTG 8585 || |||| ||| || || | | || || ||||| ||||| | ||||||| Sbjct 10348591 AGGCATCGATGTCCCCATATAACTCTTCCAGCTCCGCAGCCATCTCAGTCTCTCCTG 10348647 Score = 91.5 bits (100), Expect = 2e-13 Identities = 106/141 (75%), Gaps = 4/141 (3%) Strand=Plus/Plus Query 9647 GTTCTTACCCCATGTCCCAGTCCTTTAGTGAAGGCCGGGCC--TCGCGCCAAATCAGTCC 9704 || || |||||||| |||| |||| ||||| | || || || |||| | ||| Sbjct 10359331 GTACTCACCCCATGGCCCAAAGCTTTGGTGAAACCTGGACCCATCTTGCCAGA--AGTTT 10359388 Query 9705 TAAAAAACTGGTGCGTGAAATGTTGGCCAAAAAAGGCAAACATTAAGTTGGTGCCCTGGG 9764 | || ||||| || ||||| ||||| |||||||||||||||| | ||||||||| |||| Sbjct 10359389 TGAAGAACTGATGGGTGAAGTGTTGTGCAAAAAAGGCAAACATGACGTTGGTGCCTTGGG 10359448 Query 9765 GATCGGGAGTGAAGGTCCTCC 9785 | || ||| |||| |||||| Sbjct 10359449 GGTCAGGAATGAACTTCCTCC 10359469 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 716783417835840