Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Ochotona_20princeps_20[refseq_20GCF_5F000292845.1_202012-08-27] 10,421 sequences; 2,229,840,584 total letters Query= NC_033775.1 Length=376207 Score E Sequences producing significant alignments: (Bits) Value seq42 154 4e-32 seq49 140 8e-28 seq76 136 1e-26 seq6 134 3e-26 seq65 131 4e-25 seq17 127 5e-24 seq40 114 3e-20 seq67 113 1e-19 seq26 100 7e-16 seq58 93.3 1e-13 seq30 89.7 1e-12 seq7 87.8 4e-12 seq11 86.0 2e-11 >seq42 Length=18384968 Score = 154 bits (170), Expect = 4e-32 Identities = 160/208 (77%), Gaps = 4/208 (2%) Strand=Plus/Plus Query 177924 CAAATTTTCGTGAAAACTCTCACAGGAAAAACGATCACCCTCGAGGTGGAAAGCTCA--G 177981 || || ||||| || || || || || || || |||||||||||||||| ||| || | Sbjct 13799902 CAGATCTTCGTAAAGACCCTGACGGGCAAGACCATCACCCTCGAGGTGG--AGCCCAGCG 13799959 Query 177982 ACACCATCGAGAACGTCAAACAAAAGATTCAGGACAAAGAAGGAATCCCTCCGGACCAGC 178041 |||||||||| |||||||| ||||| |||||||| || || ||||| |||||||||| Sbjct 13799960 ACACCATCGAAAACGTCAAGACCAAGATCCAGGACAAGGAGGGCATCCCCCCGGACCAGC 13800019 Query 178042 AACGACTTATCTTCGCCGGAAAACAGCTCGAAGATGGAAGGACTCTTGCCGATTATAACG 178101 | || || ||||| ||| | || ||||| || ||||| | ||||| |||| || ||| Sbjct 13800020 AGCGTCTCATCTTTGCCAGCAAGCAGCTGGAGGATGGTCGCACTCTGTCCGACTACAACA 13800079 Query 178102 TCCAAAAAGAATCAACACTGCATCTTGT 178129 |||| ||||| || || ||||| || || Sbjct 13800080 TCCAGAAAGAGTCCACGCTGCACCTGGT 13800107 >seq49 Length=14824766 Score = 140 bits (154), Expect = 8e-28 Identities = 151/200 (76%), Gaps = 0/200 (0%) Strand=Plus/Plus Query 177924 CAAATTTTCGTGAAAACTCTCACAGGAAAAACGATCACCCTCGAGGTGGAAAGCTCAGAC 177983 || || |||||||| || || || || || || |||||||| ||||||||| | ||| Sbjct 11086099 CAGATCTTCGTGAAGACCCTGACTGGCAAGACCATCACCCTGGAGGTGGAACCCAGCGAC 11086158 Query 177984 ACCATCGAGAACGTCAAACAAAAGATTCAGGACAAAGAAGGAATCCCTCCGGACCAGCAA 178043 |||||||| || ||||| ||||| ||||| |||||||| |||||||| |||||||| Sbjct 11086159 ACCATCGAAAATGTCAAGGCCAAGATCCAGGATAAAGAAGGCATCCCTCCCGACCAGCAG 11086218 Query 178044 CGACTTATCTTCGCCGGAAAACAGCTCGAAGATGGAAGGACTCTTGCCGATTATAACGTC 178103 | || ||||| || || || ||||| ||||| ||| | || || | || || ||| || Sbjct 11086219 AGGCTGATCTTTGCAGGCAAGCAGCTGGAAGACGGACGCACCCTGTCTGACTACAACATC 11086278 Query 178104 CAAAAAGAATCAACACTGCA 178123 || || || || || ||||| Sbjct 11086279 CAGAAGGAGTCCACCCTGCA 11086298 >seq76 Length=7797616 Score = 136 bits (150), Expect = 1e-26 Identities = 156/208 (75%), Gaps = 4/208 (2%) Strand=Plus/Minus Query 177924 CAAATTTTCGTGAAAACTCTCACAGGAAAAACGATCACCCTCGAGGTGGAAAGCTCAG-- 177981 || || |||||||| || || || || || || |||||||| |||||||| || ||| Sbjct 4981033 CAGATCTTCGTGAAGACCCTGACTGGCAAGACCATCACCCTGGAGGTGGA--GCCCAGCG 4980976 Query 177982 ACACCATCGAGAACGTCAAACAAAAGATTCAGGACAAAGAAGGAATCCCTCCGGACCAGC 178041 ||||||||||||| ||||| ||||| ||||| || ||||| |||||||| ||||||| Sbjct 4980975 ACACCATCGAGAATGTCAAGGCCAAGATCCAGGATAAGGAAGGCATCCCTCCCGACCAGC 4980916 Query 178042 AACGACTTATCTTCGCCGGAAAACAGCTCGAAGATGGAAGGACTCTTGCCGATTATAACG 178101 | | || ||||| || || || ||||| ||||| || | || || | || || ||| Sbjct 4980915 AGAGGCTGATCTTTGCAGGCAAGCAGCTGGAAGACGGCCGCACCCTGTCTGACTACAACA 4980856 Query 178102 TCCAAAAAGAATCAACACTGCATCTTGT 178129 |||| || || || || ||||| || || Sbjct 4980855 TCCAGAAGGAGTCCACCCTGCACCTGGT 4980828 >seq6 Length=51880498 Score = 134 bits (148), Expect = 3e-26 Identities = 154/206 (75%), Gaps = 1/206 (0%) Strand=Plus/Plus Query 177924 CAAATTTTCGTGAAAACTCTCACAGGAAAAACGATCACCCTCGAGGTGGAAAGCTCAGAC 177983 || || |||||||| || || || || || || |||||||| ||||||||| | ||| Sbjct 47505063 CAGATCTTCGTGAAGACCCTGACCGGCAAGACCATCACCCTGGAGGTGGAACCCAGCGAC 47505122 Query 177984 ACCATCGAGAACGTCAAACAAAAGATTCAGGACAAAGAAGGAATCCCTCCGGACCAGCAA 178043 ||||||||||| ||||| ||||| |||| || ||||| |||||||| |||||||| Sbjct 47505123 ACCATCGAGAATGTCAAGGCCAAGATCCAGG-TAAGGAAGGCATCCCTCCTGACCAGCAG 47505181 Query 178044 CGACTTATCTTCGCCGGAAAACAGCTCGAAGATGGAAGGACTCTTGCCGATTATAACGTC 178103 | || ||||| || || || ||||| |||||||| | || || | || || ||| || Sbjct 47505182 AGGCTGATCTTTGCAGGCAAGCAGCTGGAAGATGGCCGCACCCTGTCTGACTACAACATC 47505241 Query 178104 CAAAAAGAATCAACACTGCATCTTGT 178129 || || || || || ||||| || || Sbjct 47505242 CAGAAGGAGTCCACCCTGCACCTGGT 47505267 >seq65 Length=10584338 Score = 131 bits (144), Expect = 4e-25 Identities = 157/211 (74%), Gaps = 2/211 (1%) Strand=Plus/Plus Query 177930 TTCGTGAAAACTCTCACAGGAAAAACGATCACCCTCGAGGTGGAAAGCTCAGACACCATC 177989 || || || || || ||||| || || |||||||||||||| || ||| || || || Sbjct 10480789 TTTGTCAAGACCCTTACAGGCAAGACCATCACCCTCGAGGTTGAGCCCTCGGATACGATA 10480848 Query 177990 GAGAACGTCAAA-CAAAAGATTCAGGACAAAGAAGGAATCCCTCCGGACCAGCAACGACT 178048 || ||||| ||| | |||| | ||||| || |||||||| |||| ||| |||||| |||| Sbjct 10480849 GAAAACGTAAAAGCCAAAG-TCCAGGATAAGGAAGGAATTCCTCTGGATCAGCAAAGACT 10480907 Query 178049 TATCTTCGCCGGAAAACAGCTCGAAGATGGAAGGACTCTTGCCGATTATAACGTCCAAAA 178108 ||||| || || || ||||| ||| |||| | ||| | | || || ||| | || || Sbjct 10480908 GATCTTTGCTGGCAAGCAGCTGGAATATGGCCGAACTTTATCGGACTACAACATTCAGAA 10480967 Query 178109 AGAATCAACACTGCATCTTGTTTTGAGACTC 178139 || || || |||||||| || |||||||| Sbjct 10480968 GGAGTCTACTCTGCATCTGGTGCTGAGACTC 10480998 >seq17 Length=35549867 Score = 127 bits (140), Expect = 5e-24 Identities = 154/208 (74%), Gaps = 4/208 (2%) Strand=Plus/Plus Query 177924 CAAATTTTCGTGAAAACTCTCACAGGAAAAACGATCACCCTCGAGGTGGAAAGCTCAG-- 177981 || || || ||||| || || || | || || |||||||| ||||| || || ||| Sbjct 30592895 CAGATCTTTGTGAAGACCCTGACCAGCAAGACCATCACCCTGGAGGTTGA--GCACAGCG 30592952 Query 177982 ACACCATCGAGAACGTCAAACAAAAGATTCAGGACAAAGAAGGAATCCCTCCGGACCAGC 178041 ||||||||||||| ||||| ||||| ||||| || ||||| |||||||| |||||| Sbjct 30592953 ACACCATCGAGAATGTCAAGGCCAAGATCCAGGATAAGGAAGGCATCCCTCCCGACCAGA 30593012 Query 178042 AACGACTTATCTTCGCCGGAAAACAGCTCGAAGATGGAAGGACTCTTGCCGATTATAACG 178101 | | || ||||| || || || ||||| |||||||| | || || | || || ||| Sbjct 30593013 AGAGGCTGATCTTTGCAGGCAAGCAGCTGGAAGATGGCCGCACCCTGTCTGACTACAACA 30593072 Query 178102 TCCAAAAAGAATCAACACTGCATCTTGT 178129 ||||||| || || || ||||| || || Sbjct 30593073 TCCAAAAGGAGTCCACCCTGCACCTGGT 30593100 >seq40 Length=19049039 Score = 114 bits (126), Expect = 3e-20 Identities = 149/204 (73%), Gaps = 4/204 (2%) Strand=Plus/Plus Query 177928 TTTTCGTGAAAACTCTCACAGGAAAAACGATCACCCTCGAGGTGGAAAGCTCAG--ACAC 177985 |||| || || || || || || || || |||||||| ||||| || || ||| |||| Sbjct 15841126 TTTTTGTCAAGACCCTAACCGGCAAGACCATCACCCTGGAGGTCGA--GCCCAGCGACAC 15841183 Query 177986 CATCGAGAACGTCAAACAAAAGATTCAGGACAAAGAAGGAATCCCTCCGGACCAGCAACG 178045 ||||||||| ||||| ||||| ||||| || ||||| |||||||| |||||||| | Sbjct 15841184 CATCGAGAATGTCAAGGCCAAGATCCAGGATAAGGAAGGCATCCCTCCCGACCAGCAGAG 15841243 Query 178046 ACTTATCTTCGCCGGAAAACAGCTCGAAGATGGAAGGACTCTTGCCGATTATAACGTCCA 178105 || ||||| || || || ||||| ||||| | || || | || || ||| |||| Sbjct 15841244 GCTGATCTTTGCAGGCAAGCAGCTGGAAGACAACCGCACCCTGTCTGACTACAACATCCA 15841303 Query 178106 AAAAGAATCAACACTGCATCTTGT 178129 || || || || ||||| || || Sbjct 15841304 GAAGGAGTCCACCCTGCACCTGGT 15841327 >seq67 Length=9509266 Score = 113 bits (124), Expect = 1e-19 Identities = 154/215 (72%), Gaps = 0/215 (0%) Strand=Plus/Plus Query 177924 CAAATTTTCGTGAAAACTCTCACAGGAAAAACGATCACCCTCGAGGTGGAAAGCTCAGAC 177983 || || || || || || || || || || || |||||||||||||| || ||| || Sbjct 6398159 CAGATCTTTGTCAAGACCCTTACGGGCAAGACCATCACCCTCGAGGTTGAGCCCTCGGAT 6398218 Query 177984 ACCATCGAGAACGTCAAACAAAAGATTCAGGACAAAGAAGGAATCCCTCCGGACCAGCAA 178043 || || || || || || || || ||||| || |||||||| ||||| || |||||| Sbjct 6398219 ACAATAGAAAATGTATAAGCCAAAATCCAGGATAAGGAAGGAATTCCTCCAGATCAGCAA 6398278 Query 178044 CGACTTATCTTCGCCGGAAAACAGCTCGAAGATGGAAGGACTCTTGCCGATTATAACGTC 178103 |||| ||||| || || || ||||| |||||||| | | | | | ||||| ||| | Sbjct 6398279 AGACTGATCTTTGCTGGCAAGCAGCTGGAAGATGGCCGAAGTTTATCTGATTACAACATT 6398338 Query 178104 CAAAAAGAATCAACACTGCATCTTGTTTTGAGACT 178138 || || || | || ||||| || || ||||||| Sbjct 6398339 CAGAAGGAGTGCACTCTGCACCTGGTGCTGAGACT 6398373 >seq26 Length=25362064 Score = 100 bits (110), Expect = 7e-16 Identities = 128/174 (74%), Gaps = 2/174 (1%) Strand=Plus/Plus Query 177957 ATCACCCTCGAGGTGGAAAGCTCAGACACCATCGAGAACGTCAAACAAAAGATTCAGGAC 178016 || ||||| ||||||||| | |||||||||||||| ||||| | ||| || || Sbjct 23897848 ATAACCCTGGAGGTGGAACCCAGCGACACCATCGAGAATGTCAAGGCCATGATCCAAGAT 23897907 Query 178017 AAAGAAGGAATCCCTCCGGACCAGCAACGACTTATCTTCGCCGGAAAACAGCTCGAAGAT 178076 || ||||| | |||||| |||||||| | || ||||| ||||| || ||||| |||||| Sbjct 23897908 AAGGAAGGCAGCCCTCCTGACCAGCAGAGGCTGATCTTTGCCGGCAAGCAGCTGGAAGAT 23897967 Query 178077 GGAAGGACTCTTG-CCGATTATAACGTCCAAAAAGAATCAACACTGCATCTTGT 178129 || || |||| | || || ||| |||| || | || || ||||| || || Sbjct 23897968 GGCCACAC-CTTGTCTGACTACAACATCCAGAAGAAGTCCACCCTGCACCTGGT 23898020 >seq58 Length=12492363 Score = 93.3 bits (102), Expect = 1e-13 Identities = 110/149 (74%), Gaps = 0/149 (0%) Strand=Plus/Minus Query 177981 GACACCATCGAGAACGTCAAACAAAAGATTCAGGACAAAGAAGGAATCCCTCCGGACCAG 178040 |||||||||||||| ||||| ||||| ||||| || ||||| |||||||| |||||| Sbjct 9398194 GACACCATCGAGAATGTCAAGGCCAAGATCCAGGATAAGGAAGGCATCCCTCCCGACCAG 9398135 Query 178041 CAACGACTTATCTTCGCCGGAAAACAGCTCGAAGATGGAAGGACTCTTGCCGATTATAAC 178100 || | || ||||| || || || | || |||||||| | || || | || || ||| Sbjct 9398134 CAGAGGCTGATCTTTGCAGGCAAGGAACTGGAAGATGGCCGCACCCTGTCTGACTACAAC 9398075 Query 178101 GTCCAAAAAGAATCAACACTGCATCTTGT 178129 |||| || || || || |||| || || Sbjct 9398074 ATCCAGAAGGAGTCCACCTTGCACCTGGT 9398046 Score = 91.5 bits (100), Expect = 4e-13 Identities = 94/121 (78%), Gaps = 4/121 (3%) Strand=Plus/Minus Query 177924 CAAATTTTCGTGAAAACTCTCACAGGAAAAACGATCACCCTCGAGGTGGAAAGCTCAG-- 177981 || || |||||||| || || || || || || ||| |||| ||||| || || ||| Sbjct 9398023 CAGATCTTCGTGAAGACCCTGACCGGCAAGACCATCCCCCTGGAGGTCGA--GCCCAGCA 9397966 Query 177982 ACACCATCGAGAACGTCAAACAAAAGATTCAGGACAAAGAAGGAATCCCTCCGGACCAGC 178041 ||||||||||||| ||||| ||||| ||||| || ||||| |||||||| ||||||| Sbjct 9397965 ACACCATCGAGAATGTCAAGGCCAAGATCCAGGATAAGGAAGGCATCCCTCCCGACCAGC 9397906 Query 178042 A 178042 | Sbjct 9397905 A 9397905 >seq30 Length=25365230 Score = 89.7 bits (98), Expect = 1e-12 Identities = 117/160 (73%), Gaps = 8/160 (5%) Strand=Plus/Minus Query 177924 CAAATTTTCGTGAAAACTCTCACAGGAAAAACGATCACCCTCGAGGTGGAAAGCTCAG-- 177981 || || ||| |||| || || ||||| || || || || || |||||||| || ||| Sbjct 16538570 CAGATCTTCATGAAGACCCTGACAGGCAACACCATTACGCTTGAGGTGGA--GCCCAGCG 16538513 Query 177982 ACACCATCGAGAACGTCAAACAA----AAGATTCAGGACAAAGAAGGAATCCCTCCGGAC 178037 ||||| || | ||||| ||| ||||| |||||| |||| || ||||| |||||| Sbjct 16538512 ACACCTTCAAAAACGTTTTTCAAGGCGAAGATCCAGGACGAAGAGGGCATCCCCCCGGAC 16538453 Query 178038 CAGCAACGACTTATCTTCGCCGGAAAACAGCTCGAAGATG 178077 ||||| || || ||||| |||| || ||| | || |||| Sbjct 16538452 CAGCAGCGTCTGATCTTTGCCGACAAGCAGTTGGAGGATG 16538413 >seq7 Length=48563517 Score = 87.8 bits (96), Expect = 4e-12 Identities = 142/203 (70%), Gaps = 1/203 (0%) Strand=Plus/Minus Query 177927 ATTTTCGTGAAAACTCTCACAGGAAAAACGATCACCCTCGAGGTGGAAAGCTCAGACACC 177986 || || ||||| ||||| | || | || |||||| |||||||||| | |||| Sbjct 22655014 ATCTTTGTGAAGACTCTGATGGGCTAGACCATCACC-TCGAGGTGGAGTCTAGTGCCACC 22654956 Query 177987 ATCGAGAACGTCAAACAAAAGATTCAGGACAAAGAAGGAATCCCTCCGGACCAGCAACGA 178046 | || || ||||| |||| ||||||||||| || |||| || | |||||| | Sbjct 22654955 ACTGAAAATGTCAAGGCGAAGACCCAGGACAAAGAGGGCATCCTCCCAGTCCAGCAGCAT 22654896 Query 178047 CTTATCTTCGCCGGAAAACAGCTCGAAGATGGAAGGACTCTTGCCGATTATAACGTCCAA 178106 |||||||| ||||| || | || || ||||| | ||||| || || ||| |||| Sbjct 22654895 CTTATCTTTGCCGGCAAGCCTCTGGAGGATGGTGGCACTCTGTGGGACTACAACATCCAG 22654836 Query 178107 AAAGAATCAACACTGCATCTTGT 178129 |||| || |||||||| || || Sbjct 22654835 GAAGAGTCCACACTGCACCTGGT 22654813 >seq11 Length=41765191 Score = 86.0 bits (94), Expect = 2e-11 Identities = 113/157 (72%), Gaps = 0/157 (0%) Strand=Plus/Minus Query 177930 TTCGTGAAAACTCTCACAGGAAAAACGATCACCCTCGAGGTGGAAAGCTCAGACACCATC 177989 ||| |||| || || || || || | ||||||||| || |||| | | |||||| Sbjct 39453461 TTCATGAATACCCTGACGGGCAAGAGCATCACCCTCAAGATGGAGTCCAGTGGCACCATT 39453402 Query 177990 GAGAACGTCAAACAAAAGATTCAGGACAAAGAAGGAATCCCTCCGGACCAGCAACGACTT 178049 | |||||||| ||||| ||||||||||| || ||||| | |||||||| || || Sbjct 39453401 AAAAACGTCAAGGCGAAGATACAGGACAAAGAGGGCATCCCCCAGGACCAGCCGCGTCTG 39453342 Query 178050 ATCTTCGCCGGAAAACAGCTCGAAGATGGAAGGACTC 178086 ||||| ||||| || | ||| || | ||| | |||| Sbjct 39453341 ATCTTTGCCGGCAAGCGGCTGGAGGGTGGTGGCACTC 39453305 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1203570478938674