Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Ochotona_20princeps_20[refseq_20GCF_5F000292845.1_202012-08-27] 10,421 sequences; 2,229,840,584 total letters Query= NC_033780.1 Length=144510 Score E Sequences producing significant alignments: (Bits) Value seq42 159 3e-34 seq76 134 1e-26 seq6 122 8e-23 seq49 118 1e-21 seq40 114 1e-20 seq17 107 2e-18 seq24 104 2e-17 seq8 86.0 6e-12 seq89 84.2 2e-11 >seq42 Length=18384968 Score = 159 bits (176), Expect = 3e-34 Identities = 175/230 (76%), Gaps = 2/230 (1%) Strand=Plus/Minus Query 41635 GCCGCCGCGTAGACGTAACACCAGATGCAGCGTGCTCTCCTTCTGAATGTTATAGTCGGA 41694 ||| || || || || | |||||| ||||||||| ||| ||||| ||||| |||||||| Sbjct 13800126 GCCACCCCGCAGGCGGAGCACCAGGTGCAGCGTGGACTCTTTCTGGATGTTGTAGTCGGA 13800067 Query 41695 GAGGGTGCGCTCGTCGTCGAGCTGCTTGCCGGCGAATATCAGGCGCTGTTGGTCCGCGGG 41754 || ||||| | || || |||||||||| ||| || || || ||||| ||||||| ||| Sbjct 13800066 CAGAGTGCGACCATCCTCCAGCTGCTTGCTGGCAAAGATGAGACGCTGCTGGTCCGGGGG 13800007 Query 41755 AACGCTCTCCTTGTCCATGATTTTTTGCTTCAACGACGAC-ACAGTGTCGCTCGACTCCA 41813 | || |||||||||| ||| || ||| | || | | |||||||| | ||||| Sbjct 13800006 GATGCCCTCCTTGTCCTGGATCTTGGTCTTGA-CGTTTTCGATGGTGTCGCTGGGCTCCA 13799948 Query 41814 CCTCCACCGTTATCGTTTTACCCGTCAGCGTCTTTACGAAAATCTGCATG 41863 |||| | || || || || |||||||| ||||||||||| ||||||||| Sbjct 13799947 CCTCGAGGGTGATGGTCTTGCCCGTCAGGGTCTTTACGAAGATCTGCATG 13799898 >seq76 Length=7797616 Score = 134 bits (148), Expect = 1e-26 Identities = 155/209 (74%), Gaps = 0/209 (0%) Strand=Plus/Plus Query 41654 ACCAGATGCAGCGTGCTCTCCTTCTGAATGTTATAGTCGGAGAGGGTGCGCTCGTCGTCG 41713 ||||| ||||| ||| ||||||||| ||||| ||||| || |||||||| |||| || Sbjct 4980828 ACCAGGTGCAGGGTGGACTCCTTCTGGATGTTGTAGTCAGACAGGGTGCGGCCGTCTTCC 4980887 Query 41714 AGCTGCTTGCCGGCGAATATCAGGCGCTGTTGGTCCGCGGGAACGCTCTCCTTGTCCATG 41773 ||||||||||| || || ||||| | ||| ||||| | || | || ||||| ||| | Sbjct 4980888 AGCTGCTTGCCTGCAAAGATCAGCCTCTGCTGGTCGGGAGGGATGCCTTCCTTATCCTGG 4980947 Query 41774 ATTTTTTGCTTCAACGACGACACAGTGTCGCTCGACTCCACCTCCACCGTTATCGTTTTA 41833 || || ||| | | | |||||||| | ||||||||||| || || || || Sbjct 4980948 ATCTTGGCCTTGACATTCTCGATGGTGTCGCTGGGCTCCACCTCCAGGGTGATGGTCTTG 4981007 Query 41834 CCCGTCAGCGTCTTTACGAAAATCTGCAT 41862 || ||||| ||||| ||||| |||||||| Sbjct 4981008 CCAGTCAGGGTCTTCACGAAGATCTGCAT 4981036 >seq6 Length=51880498 Score = 122 bits (134), Expect = 8e-23 Identities = 168/234 (72%), Gaps = 1/234 (0%) Strand=Plus/Minus Query 41632 ACCGCCGCCGCGTAGACGTAACACCAGATGCAGCGTGCTCTCCTTCTGAATGTTATAGTC 41691 || ||| || | ||||| | ||||| ||||| ||| ||||||||| ||||| ||||| Sbjct 47505289 ACAGCCACCCCTAAGACGGAGGACCAGGTGCAGGGTGGACTCCTTCTGGATGTTGTAGTC 47505230 Query 41692 GGAGAGGGTGCGCTCGTCGTCGAGCTGCTTGCCGGCGAATATCAGGCGCTGTTGGTCCGC 41751 || |||||||| | || || ||||||||||| || || ||||| | ||| ||||| | Sbjct 47505229 AGACAGGGTGCGGCCATCTTCCAGCTGCTTGCCTGCAAAGATCAGCCTCTGCTGGTCAGG 47505170 Query 41752 GGGAACGCTCTCCTTGTCCATGATTTTTTGCTTCAACGACGACACAGTGTCGCTCGACTC 41811 || | || ||||| || ||| || ||| | | | |||||||| | || Sbjct 47505169 AGGGATGCCTTCCTT-ACCTGGATCTTGGCCTTGACATTCTCGATGGTGTCGCTGGGTTC 47505111 Query 41812 CACCTCCACCGTTATCGTTTTACCCGTCAGCGTCTTTACGAAAATCTGCATGTT 41865 |||||||| || || || || || ||||| ||||| ||||| |||||||| || Sbjct 47505110 CACCTCCAGGGTGATGGTCTTGCCGGTCAGGGTCTTCACGAAGATCTGCATCTT 47505057 >seq49 Length=14824766 Score = 118 bits (130), Expect = 1e-21 Identities = 151/206 (73%), Gaps = 4/206 (2%) Strand=Plus/Minus Query 41660 TGCAGCGTGCTCTCCTTCTGAATGTTATAGTCGGAGAGGGTGCGCTCGTCGTCGAGCTGC 41719 ||||| ||| ||||||||| ||||| ||||| || |||||||| |||| || |||||| Sbjct 11086298 TGCAGGGTGGACTCCTTCTGGATGTTGTAGTCAGACAGGGTGCGTCCGTCTTCCAGCTGC 11086239 Query 41720 TTGCCGGCGAATATCAGGCGCTGTTGGTCCGCGGGAACGCTCTCCTTGTCCATGATTTTT 41779 ||||| || || ||||| | ||| ||||| | || | || || || ||| ||| || Sbjct 11086238 TTGCCTGCAAAGATCAGCCTCTGCTGGTCGGGAGGGATGCCTTCTTTATCCTGGATCTTG 11086179 Query 41780 TGCTT--CAACGACGACACAGTGTCGCTCGACTCCACCTCCACCGTTATCGTTTTACCCG 41837 ||| || || | |||||||| | |||||||||| || || || || || | Sbjct 11086178 GCCTTGACATTTTCG--ATGGTGTCGCTGGGTTCCACCTCCAGGGTGATGGTCTTGCCAG 11086121 Query 41838 TCAGCGTCTTTACGAAAATCTGCATG 41863 |||| ||||| ||||| ||||||||| Sbjct 11086120 TCAGGGTCTTCACGAAGATCTGCATG 11086095 >seq40 Length=19049039 Score = 114 bits (126), Expect = 1e-20 Identities = 152/211 (72%), Gaps = 0/211 (0%) Strand=Plus/Minus Query 41645 AGACGTAACACCAGATGCAGCGTGCTCTCCTTCTGAATGTTATAGTCGGAGAGGGTGCGC 41704 ||||| | ||||| ||||| ||| ||||||||| ||||| ||||| || |||||||| Sbjct 15841336 AGACGGAGGACCAGGTGCAGGGTGGACTCCTTCTGGATGTTGTAGTCAGACAGGGTGCGG 15841277 Query 41705 TCGTCGTCGAGCTGCTTGCCGGCGAATATCAGGCGCTGTTGGTCCGCGGGAACGCTCTCC 41764 | ||| || ||||||||||| || || ||||| | ||| ||||| | || | || ||| Sbjct 15841276 TTGTCTTCCAGCTGCTTGCCTGCAAAGATCAGCCTCTGCTGGTCGGGAGGGATGCCTTCC 15841217 Query 41765 TTGTCCATGATTTTTTGCTTCAACGACGACACAGTGTCGCTCGACTCCACCTCCACCGTT 41824 || ||| ||| || ||| | | | |||||||| | ||| ||||||| || Sbjct 15841216 TTATCCTGGATCTTGGCCTTGACATTCTCGATGGTGTCGCTGGGCTCGACCTCCAGGGTG 15841157 Query 41825 ATCGTTTTACCCGTCAGCGTCTTTACGAAAA 41855 || || || || || || ||||| || |||| Sbjct 15841156 ATGGTCTTGCCGGTTAGGGTCTTGACAAAAA 15841126 >seq17 Length=35549867 Score = 107 bits (118), Expect = 2e-18 Identities = 155/219 (71%), Gaps = 0/219 (0%) Strand=Plus/Minus Query 41645 AGACGTAACACCAGATGCAGCGTGCTCTCCTTCTGAATGTTATAGTCGGAGAGGGTGCGC 41704 ||||| | ||||| ||||| ||| |||||| || ||||| ||||| || |||||||| Sbjct 30593109 AGACGGAGGACCAGGTGCAGGGTGGACTCCTTTTGGATGTTGTAGTCAGACAGGGTGCGG 30593050 Query 41705 TCGTCGTCGAGCTGCTTGCCGGCGAATATCAGGCGCTGTTGGTCCGCGGGAACGCTCTCC 41764 | || || ||||||||||| || || ||||| | || ||||| | || | || ||| Sbjct 30593049 CCATCTTCCAGCTGCTTGCCTGCAAAGATCAGCCTCTTCTGGTCGGGAGGGATGCCTTCC 30592990 Query 41765 TTGTCCATGATTTTTTGCTTCAACGACGACACAGTGTCGCTCGACTCCACCTCCACCGTT 41824 || ||| ||| || ||| | | | |||||||| ||| ||||||| || Sbjct 30592989 TTATCCTGGATCTTGGCCTTGACATTCTCGATGGTGTCGCTGTGCTCAACCTCCAGGGTG 30592930 Query 41825 ATCGTTTTACCCGTCAGCGTCTTTACGAAAATCTGCATG 41863 || || || | ||||| ||||| || || ||||||||| Sbjct 30592929 ATGGTCTTGCTGGTCAGGGTCTTCACAAAGATCTGCATG 30592891 >seq24 Length=26830293 Score = 104 bits (114), Expect = 2e-17 Identities = 151/212 (71%), Gaps = 5/212 (2%) Strand=Plus/Minus Query 41654 ACCAGATGCAGCGTGCTCTCCTTCTGAATGTTATAGTCGGAGAGGGTGCGCTCGTCGTCG 41713 ||||| ||||| ||| ||||||||| ||||| ||||| || |||||| | | || || Sbjct 11934351 ACCAGGTGCAGGGTGGACTCCTTCTGGATGTTGTAGTCAGACAGGGTGTGGCCATCTTCC 11934292 Query 41714 AGCTGCTTGCCGGCGAATATCAGGCGCTGTTGGTCCGCGGGAACGCTCTCCTTGTCCATG 41773 ||||||||||| || || ||||| | ||| || || | || | || ||||| ||| | Sbjct 11934291 AGCTGCTTGCCTGCAAAGATCAGCCTCTGCTGTTCGGGAGGGATGCCTTCCTTATCCTGG 11934232 Query 41774 ATTTTTTGCTT--CAACGACGACACAGTGTCGCTCGACTCCACCTCCACCGTTATCGTTT 41831 || || ||| || ||| || || | | ||||||||||| || || || | Sbjct 11934231 ATCTTGGCCTTGACATTCTCGA---TGTTTCATTGGGCTCCACCTCCAGGGTGATGGTCT 11934175 Query 41832 TACCCGTCAGCGTCTTTACGAAAATCTGCATG 41863 | || ||||| ||||| || || ||||||||| Sbjct 11934174 TGCCAGTCAGGGTCTTCACAAAGATCTGCATG 11934143 Score = 86.0 bits (94), Expect = 6e-12 Identities = 76/95 (80%), Gaps = 0/95 (0%) Strand=Plus/Minus Query 41654 ACCAGATGCAGCGTGCTCTCCTTCTGAATGTTATAGTCGGAGAGGGTGCGCTCGTCGTCG 41713 ||||| ||||| ||| ||||||||| ||||| ||||| || |||||||| | || || Sbjct 11934124 ACCAGGTGCAGGGTGGACTCCTTCTGGATGTTGTAGTCAGACAGGGTGCGGCCATCTTCC 11934065 Query 41714 AGCTGCTTGCCGGCGAATATCAGGCGCTGTTGGTC 41748 ||||||||||| || || ||||| | ||| ||||| Sbjct 11934064 AGCTGCTTGCCTGCAAAGATCAGCCTCTGCTGGTC 11934030 >seq8 Length=54109746 Score = 86.0 bits (94), Expect = 6e-12 Identities = 74/92 (80%), Gaps = 0/92 (0%) Strand=Plus/Minus Query 41654 ACCAGATGCAGCGTGCTCTCCTTCTGAATGTTATAGTCGGAGAGGGTGCGCTCGTCGTCG 41713 ||||||||||| ||| ||||||||| ||||| ||||| || |||||||| | || || Sbjct 40062428 ACCAGATGCAGGGTGGACTCCTTCTGGATGTTGTAGTCAGACAGGGTGCGGCCATCTTCC 40062369 Query 41714 AGCTGCTTGCCGGCGAATATCAGGCGCTGTTG 41745 ||||||||||| || || ||||| | ||| || Sbjct 40062368 AGCTGCTTGCCTGCAAAGATCAGCCTCTGCTG 40062337 >seq89 Length=4604762 Score = 84.2 bits (92), Expect = 2e-11 Identities = 104/144 (72%), Gaps = 9/144 (6%) Strand=Plus/Plus Query 41635 GCCGCCGCGTAGACGTAACACCAGATGCAGCGTGCTCTCCTTCTGAATGTTATAGTCGGA 41694 |||||| || || || | |||||| ||||||||| ||| ||||| ||||| ||||| || Sbjct 833637 GCCGCCCCGCAGGCGGAGCACCAGGTGCAGCGTGGACTCTTTCTGGATGTTGTAGTCCGA 833696 Query 41695 GAGGGTGCGCTCGTCGTCGAGCTGCTTGCCGGCGAATATCAGGCGCTGTTGGTCCGCGGG 41754 | |||| |||| || || ||||||||||| | |||| |||||| ||| Sbjct 833697 CGGACTGCGGCCGTCCTCCAGATGCTTGCCGGCCA---------GCTGCTGGTCCAGGGG 833747 Query 41755 AACGCTCTCCTTGTCCATGATTTT 41778 ||||| || |||||| ||| || Sbjct 833748 AACGCCGTCTTTGTCCTGGATCTT 833771 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 462243779125200