Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Octodon_20degus_20[refseq_20GCF_5F000260255.1_202012-05-01] 7,135 sequences; 2,995,889,303 total letters Query= NC_001132.2 Length=161773 Score E Sequences producing significant alignments: (Bits) Value seq187 174 2e-38 seq151 87.8 2e-12 >seq187 Length=5094135 Score = 174 bits (192), Expect = 2e-38 Identities = 305/443 (69%), Gaps = 1/443 (0%) Strand=Plus/Plus Query 16946 AGATGTTTAAACATCAGACATGCGAAATCGCAATGTAATCCCTCGTCTCTGCTGATAAGT 17005 || || || |||||||| || |||| || ||| | || ||||||| |||||| || ||| Sbjct 5115 AGGTGCTTGAACATCAGGCACACGAAGTCACAACGCAAGCCCTCGTATCTGCTAATGAGT 5174 Query 17006 TCGTTAGAAAATGTCAACCCGGGCATCTTTCCTCGTTTCTTTAACCAAAATATCGCGGCG 17065 ||||| ||||| || | || ||||| || |||||||| | ||| || ||| || Sbjct 5175 TCGTTGGAAAAGGTGAGGCCAGGCATGAGGCCCCGTTTCTTGAGCCAGAAGATCAACGCA 5234 Query 17066 AACGACCCAGAAAAGAATATACCCTCGACGGATGCAAACGCGATTAATCGTTCGGCGTAC 17125 || || ||||||||||| || || || || | |||| || | |||| | || Sbjct 5235 AAAGAACCAGAAAAGAAAATTCCTTCCACAGTGACAAAGGCCACCGTGTGTTCTCCATAT 5294 Query 17126 GTCGCGTCTTTGTTACGAATCCATTTCTGCACCCACTCGGCTTTTTGCTTTATGCAATCC 17185 || || ||||||| | ||||| | | |||| || || || | ||| | || || Sbjct 5295 GTGGCCTCTTTGTCCCCTATCCAGCGCAACGCCCAGTCTGCCTTCTTCTTCACACAGGCC 5354 Query 17186 ATCGTTTCTATGGCCTTAAATAATTTCTCTTTTTCCTGTAGGTCGATTATATACGTATCG 17245 | || || |||| || || | ||| |||| || || | || || || || Sbjct 5355 ACGGTCTCAGTGGCATTGAAGAGAAACTCCCTTTCTTGGGAATCTCTAATGTAAGTGTCC 5414 Query 17246 ATGAGTAGGCTGTACATTTCGGAGTGTATGTTCTCCATGGCTATCTGAAATCCGTAAAAG 17305 || || || |||||||||| || || | ||| |||||||| ||||| || ||||| || Sbjct 5415 ATAAGGAGTGTGTACATTTCCGAATGCAGGTTTTCCATGGCAATCTGGAAGCCGTAGAAA 5474 Query 17306 CATCGGGCTTCCGCTATTTGAACTTCCACGTAGAATCGTTCCGCTAGATTTTCGTTCACG 17365 || |||||||| | ||||||||||| || ||||| ||| | ||||| || | || Sbjct 5475 CACCGGGCTTCTGTAATTTGAACTTCTTGGTTAAATCGCTCCACCAGATTCTCACTGACT 5534 Query 17366 ATGCCGTCGCTCGCGGCGAAAAA 17388 ||||| ||||| || | |||||| Sbjct 5535 ATGCCATCGCTGGCAG-GAAAAA 5556 >seq151 Length=7174217 Score = 87.8 bits (96), Expect = 2e-12 Identities = 78/98 (80%), Gaps = 0/98 (0%) Strand=Plus/Minus Query 17234 ATATACGTATCGATGAGTAGGCTGTACATTTCGGAGTGTATGTTCTCCATGGCTATCTGA 17293 || || || || || || || ||||||||||| || |||||||| ||||| || ||||| Sbjct 1180945 ATGTAAGTGTCAATAAGCAGACTGTACATTTCCGAATGTATGTTTTCCATAGCAATCTGG 1180886 Query 17294 AATCCGTAAAAGCATCGGGCTTCCGCTATTTGAACTTC 17331 || ||||| || || |||||||| | ||||||||||| Sbjct 1180885 AAGCCGTAGAAACAACGGGCTTCTGTAATTTGAACTTC 1180848 Score = 87.8 bits (96), Expect = 2e-12 Identities = 92/121 (76%), Gaps = 0/121 (0%) Strand=Plus/Minus Query 16986 CCTCGTCTCTGCTGATAAGTTCGTTAGAAAATGTCAACCCGGGCATCTTTCCTCGTTTCT 17045 ||||||||||||| || |||||||| ||||| || | || ||||| ||||||||||| Sbjct 1182556 CCTCGTCTCTGCTAATGAGTTCGTTGGAAAAGGTGAGGCCAGGCATGAGTCCTCGTTTCT 1182497 Query 17046 TTAACCAAAATATCGCGGCGAACGACCCAGAAAAGAATATACCCTCGACGGATGCAAACG 17105 | | ||| || || | || || || ||||||||||| || || || || | ||||| | Sbjct 1182496 TGAGCCAGAAGATTGACGCAAAAGAACCAGAAAAGAAGATGCCTTCCACAGCGGCAAAGG 1182437 Query 17106 C 17106 | Sbjct 1182436 C 1182436 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 517499441401800