Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Octodon_20degus_20[refseq_20GCF_5F000260255.1_202012-05-01] 7,135 sequences; 2,995,889,303 total letters Query= NC_001266.1 Length=159857 Score E Sequences producing significant alignments: (Bits) Value seq187 172 6e-38 seq151 98.7 1e-15 >seq187 Length=5094135 Score = 172 bits (190), Expect = 6e-38 Identities = 304/443 (69%), Gaps = 0/443 (0%) Strand=Plus/Plus Query 16184 AGGTGTTTAAACATTAGACACGCGAAGTCGCAATGTAGTCCTTCGTCTCTGCTGATAAGT 16243 ||||| || ||||| || ||| ||||||| ||| | | || |||| |||||| || ||| Sbjct 5115 AGGTGCTTGAACATCAGGCACACGAAGTCACAACGCAAGCCCTCGTATCTGCTAATGAGT 5174 Query 16244 TCGTTGGAAAAAGTTAACCCTGGCATTTTTCCTCGTTTCTTTAACCAGAATATCGCAGCA 16303 ||||||||||| || | || ||||| || |||||||| | |||||| ||| ||| Sbjct 5175 TCGTTGGAAAAGGTGAGGCCAGGCATGAGGCCCCGTTTCTTGAGCCAGAAGATCAACGCA 5234 Query 16304 AATGACCCCGAAAAGAATATACCCTCAACAGATGCAAAAGCGATTAATCGTTCCGCGTAC 16363 || || || |||||||| || || || |||| |||| || | |||| | || Sbjct 5235 AAAGAACCAGAAAAGAAAATTCCTTCCACAGTGACAAAGGCCACCGTGTGTTCTCCATAT 5294 Query 16364 GTAGCATCTTTATTACGAATCCATTTCTGTACCCATTCGGCTTTTTGTTTTATACAATCC 16423 || || ||||| | | ||||| | |||| || || || | || | ||| || Sbjct 5295 GTGGCCTCTTTGTCCCCTATCCAGCGCAACGCCCAGTCTGCCTTCTTCTTCACACAGGCC 5354 Query 16424 ATCGTTTCTATGGCCTTAAACAATTTCTCTTTTTCCTGAATATCGATTATATACGTATCA 16483 | || || |||| || || | ||| |||| || ||| | || || || || Sbjct 5355 ACGGTCTCAGTGGCATTGAAGAGAAACTCCCTTTCTTGGGAATCTCTAATGTAAGTGTCC 5414 Query 16484 ATCAGTAAACTGTACATTTCTGAGTGTATGTTCTCTATGGCTATCTGAAATCCATAGAAG 16543 || || | |||||||||| || || | ||| || ||||| ||||| || || ||||| Sbjct 5415 ATAAGGAGTGTGTACATTTCCGAATGCAGGTTTTCCATGGCAATCTGGAAGCCGTAGAAA 5474 Query 16544 CATCGAGCCTCCGCTATTTGTACTTCCACGTAAAATCGTTCCGCCAGGTTCTCATTCACG 16603 || || || || | ||||| ||||| || |||||| ||| |||| |||||| | || Sbjct 5475 CACCGGGCTTCTGTAATTTGAACTTCTTGGTTAAATCGCTCCACCAGATTCTCACTGACT 5534 Query 16604 ATACCGTCACTTGCAGCaaaaaa 16626 || || || || |||| |||||| Sbjct 5535 ATGCCATCGCTGGCAGGAAAAAA 5557 >seq151 Length=7174217 Score = 98.7 bits (108), Expect = 1e-15 Identities = 93/119 (78%), Gaps = 0/119 (0%) Strand=Plus/Minus Query 16226 TCGTCTCTGCTGATAAGTTCGTTGGAAAAAGTTAACCCTGGCATTTTTCCTCGTTTCTTT 16285 ||||||||||| || |||||||||||||| || | || ||||| |||||||||||| Sbjct 1182554 TCGTCTCTGCTAATGAGTTCGTTGGAAAAGGTGAGGCCAGGCATGAGTCCTCGTTTCTTG 1182495 Query 16286 AACCAGAATATCGCAGCAAATGACCCCGAAAAGAATATACCCTCAACAGATGCAAAAGC 16344 | |||||| || | ||||| || || |||||||| || || || |||| ||||| || Sbjct 1182494 AGCCAGAAGATTGACGCAAAAGAACCAGAAAAGAAGATGCCTTCCACAGCGGCAAAGGC 1182436 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 511368788228200