Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Octodon_20degus_20[refseq_20GCF_5F000260255.1_202012-05-01] 7,135 sequences; 2,995,889,303 total letters Query= NC_001348.1 Length=124884 Score E Sequences producing significant alignments: (Bits) Value seq74 235 4e-57 seq107 136 3e-27 seq82 114 1e-20 >seq74 Length=13126430 Score = 235 bits (260), Expect = 4e-57 Identities = 515/765 (67%), Gaps = 6/765 (1%) Strand=Plus/Minus Query 18579 TTTGGAATGCAAGCTCGATACAATTTGCGAAATGAATTTCCTCTTTTAACTACAAAGCGT 18638 || || ||||| || || |||| ||||| |||||||||| || | || || |||||| Sbjct 9228545 TTCGGCATGCAGGCGCGCTACAGCCTGCGAGATGAATTTCCCCTGCTGACCACCAAGCGT 9228486 Query 18639 GTTTTTTGGAGGGCCGTCGTGGAAGAGTTGTTATGGTTTATCCGCGGGTCAACCGATTCC 18698 || || |||| || | |||||||| || | ||||||||| || || || || || Sbjct 9228485 GTATTCTGGAAGGGTATTCTGGAAGAGCTGCTGTGGTTTATCAAGGGATCTACAAATGCC 9228426 Query 18699 AAAGAACTCGCCGCTAAAGATATACACATATGGGATATATACGGATCGAGCAAATTTCTA 18758 || || || | | |||| | | || |||||| | || || | | || || Sbjct 9228425 AAGGAGCTGTCATCCAAAGGAGTGAAGATCTGGGATGCCAATGGGTCCCGGGATTTCCTG 9228366 Query 18759 AATAGGAATGGCTTCCATAAAAGACACACGGGGGACCTTGGCCCCATTTACGGCTTCCAG 18818 | || || || || | | |||||||| |||||| | || ||||||||| Sbjct 9228365 GACAGCCTGGGGTTTTCTAGCCGCAAAGAAGGGGACCTGGGCCCCGTCTATGGCTTCCAG 9228306 Query 18819 TGGAGACATTTTGGAGCGGAATATAAAGACTGTCAATCAAACTATTTACAGCAAGGAATC 18878 ||||| ||||| || || || || ||||| | ||| | || | |||||| | Sbjct 9228305 TGGAGGCATTTCGGGGCAGACTACAAAGATACGGACTCAGATTACTCGGGTCAAGGAGTT 9228246 Query 18879 GATCAGCTGCAAACTGTTATAGATACAATTAAAACAAACCCAGAAAGCCGACGAATGATT 18938 || |||||||| | || || | || || ||||| |||| | | || | || || Sbjct 9228245 GACCAGCTGCAGAACGTGATCAACACCATCAAAACCGACCCTAACGACAGAAGGATCATC 9228186 Query 18939 ATATCGTCTTGGAATCCAAAGGATATCCCCTTAATGGTACTACCTCCATGTCACACGTTA 18998 || | | ||||| ||||| ||| |||| | |||| || ||||| || ||||| | Sbjct 9228185 ATGTGTGCCTGGAACCCAAAAGATCTCCCTCTGATGGCGCTGCCTCCCTGCCACACCCTG 9228126 Query 18999 TGTCAGTTTTACGTTGCAAACGGTGAATTATCCTGCCAAGTATACCAGAGATCGGGGGAT 19058 || ||||| ||||| | ||||| || | |||||||| | |||||| | || ||||| Sbjct 9228125 TGCCAGTTCTACGTGGTGAACGGGGAGCTGTCCTGCCAGCTGTACCAGCGGTCAGGGGAC 9228066 Query 19059 ATGGGCCTTGGGGTACCGTTCAACATTGCTGGATATGCACTTCTTACCTACATAGTAGCG 19118 |||||||| || ||||| |||||||| || | | || || || |||||||| || ||| Sbjct 9228065 ATGGGCCTGGGCGTACCCTTCAACATCGCCAGCTGCGCGCTGCTCACCTACATGGTCGCG 9228006 Query 19119 CATGTTACAGGACTTAAAACCGGAGATTTAATTCATACAATGGGGGATGCACATATTTAC 19178 || || ||||| || || | ||||| || | || || |||| || |||||||| ||| Sbjct 9228005 CACGTCACAGGCCTGAAGCCAGGAGACTTCGTGCACACTTTGGGAGACGCACATATCTAC 9227946 Query 19179 TTGAATCATAT--AGATGCTTTAAAAGTGCAGCTAGCTCGATCCCCAAAACCTTTTCCTT 19236 ||||||| || || || | || | | ||||| ||| |||| ||||| || Sbjct 9227945 CTGAATCACATCAAGCCGC-TGAAGACT-CAGCTTCAACGAGAACCAAGGCCTTTCCCAA 9227888 Query 19237 GCCTTAAAATTATTCGAAATGTAACAGA-TATAAACGACTTTAAATGGGACGATTTTCAG 19295 || ||||| ||||||| || ||| || | ||||| | | || || || ||| Sbjct 9227887 AGCTCAAAATCCTTCGAAAAGT-TGAGACAATCGATGACTTCACAGCTGAAGACTTCCAG 9227829 Query 19296 CTTGATGGATATAATCCACAccccccccTAAAAATGGAAATGGCT 19340 || || || || ||||| |||||| || | || | ||| |||||| Sbjct 9227828 CTGGAAGGGTACAATCCCCACCCCTCCATTAAGAAGGAGATGGCT 9227784 >seq107 Length=10030941 Score = 136 bits (150), Expect = 3e-27 Identities = 273/407 (67%), Gaps = 16/407 (4%) Strand=Plus/Plus Query 18788 GGGGGACCTTGGCCCCATTTACGGCTTCCAGTGGAGACATTTTGGAGCGGAATATAAAGA 18847 ||||||||| |||||| | | |||||||||||||| ||||| | || || || ||| Sbjct 3002956 GGGGGACCTGGGCCCCGTCTGTGGCTTCCAGTGGAGGCATTTCAGGGCTGACTACGAAGG 3003015 Query 18848 CTGTCAATCAAACTATTTACAGCAAGGAATCGATCAGCTGCAAACTGTTATAGATACAAT 18907 | ||| | || | | |||||| || |||||||| | || || | || || Sbjct 3003016 TATGGACTCAGATTACTCAGGTCAAGGAGATGACCAGCTGCAGAACGTGATCAACACCAT 3003075 Query 18908 TAAAACAAACCCAGAAAGCCGACGAATGATTATATCGTCTTGGAATCCAAAGGATATCCC 18967 ||||| ||||| || | || | || || || | | || || | || ||| |||| Sbjct 3003076 CAAAACCAACCCTGATGACAGAAGGATCATCATGTGTGCCTGAAACCTGAAAGATCTCCC 3003135 Query 18968 CTTAATGGTACTACCTCCATGTCACACGTTATGTCAGTTTTACGTTGCAAACGGTGAATT 19027 | |||| || ||||| || ||||| | || |||||||||| | || || || | Sbjct 3003136 TCTGATGGCTCTGCCTCCCTGCCACACCCTGTGCTAGTTTTACGTGGTGAATGGGGAGCT 3003195 Query 19028 ATCCTGCCAAGTATACCAGAGA--TCGGGGGATATGGGCCTTGGGGTACCGTTCAACATT 19085 |||||||| ||||| || || |||||||||||||| || || || |||||||| Sbjct 3003196 GTCCTGCCAGCCGTACCACAGTGGTCAGGGGATATGGGCCTGGGAGTGCCCTTCAACATC 3003255 Query 19086 GCTGGATATGCACTTCTTACCTACATAGTAGCGCATGTTACAGGACTTAAAACCGGAGAT 19145 | | || || || || |||||| | || |||||||| | |||| Sbjct 3003256 GTCAGCTACGCGCTGCTCACCTACTTGGTCGCGCATGT--------------CAGGAGGC 3003301 Query 19146 TTAATTCATACAATGGGGGATGCACATATTTACTTGAATCATATAGA 19192 || | ||||| |||| ||||||||||| ||| ||||||| || || Sbjct 3003302 TTTGTGCATACTTTGGGAGATGCACATATCTACCTGAATCACATTGA 3003348 >seq82 Length=12555031 Score = 114 bits (126), Expect = 1e-20 Identities = 267/404 (66%), Gaps = 8/404 (2%) Strand=Plus/Minus Query 18789 GGGGACCTTGGCCCCATTTACGGCTTCCAGTGGAGACATTTTGGAGCGGAATATAAAGAC 18848 |||||||| ||||| | || | |||||||||| | ||||| | || || || ||||| Sbjct 10556604 GGGGACCTGGGCCCTGTCTATGACTTCCAGTGGTGGTATTTTTGTGCTGACTACAAAGAT 10556545 Query 18849 TGTCAATCAAACTATTTACAGCAAGGAATCGATCAGCTGCAAACTGTTATAGATACAATT 18908 | ||| | || ||| |||||| | | |||||||| | || || | || | Sbjct 10556544 ATGGACTCAGATTACTTAGGTCAAGGAGTTAACCAGCTGCAGAATGCGATCAACACCGTC 10556485 Query 18909 AAAACAAACCCAGAAAGCCGACGAATGATTATATCGTCTTGGAATCCAAAGGATATCCCC 18968 ||| ||||| || | | || | || || || | | ||||| |||| ||| |||| Sbjct 10556484 AAAGTTAACCCTGACAACAGAAGTATCATCATGTGTGCCTGGAACCCAACAGATCTCCCT 10556425 Query 18969 TTAATGGTACTACCTCCATGTCACACGTTATGTCAGTTTTACGTTGCAAACGGTGAATTA 19028 | |||| || ||||| || ||| | | || ||||| ||||| | |||| || Sbjct 10556424 CTGATGGCCCTGCCTCCCTGCCACGCCCTGTGCCAGTTCTACGTGGTGAACGAGGA---- 10556369 Query 19029 TCCTGCCAAGTATACCAGAGATCGGGGGATATGGGCCTTGGGGTACCGTTCAACATTGCT 19088 |||| |||||||| | || | | | ||||||| || || || |||||||| || Sbjct 10556368 ----GCCAGCTATACCAGCGGTCAGAGAACGTGGGCCTGGGTGTGCCCTTCAACATCGCC 10556313 Query 19089 GGATATGCACTTCTTACCTACATAGTAGCGCATGTTACAGGACTTAAAACCGGAGATTTA 19148 | || | || || |||||| || |||| | | || | || | || || || Sbjct 10556312 AGCTACGGGCTGCTCCACTACATGGTCACGCACATCGCGGGCTTGAAGGCAGGTGACTTG 10556253 Query 19149 ATTCATACAATGGGGGATGCACATATTTACTTGAATCATATAGA 19192 | |||||| ||| || |||||||| ||||||||||| || || Sbjct 10556252 GTGCATACATTGGCAGACGCACATATCTACTTGAATCACATTGA 10556209 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 399469260006075