Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Octodon_20degus_20[refseq_20GCF_5F000260255.1_202012-05-01] 7,135 sequences; 2,995,889,303 total letters Query= NC_001611.1 Length=185578 Score E Sequences producing significant alignments: (Bits) Value seq288 417 1e-111 seq187 235 7e-57 seq206 174 2e-38 seq146 129 7e-25 seq151 120 4e-22 seq64 105 8e-18 >seq288 Length=2168581 Score = 417 bits (462), Expect = 1e-111 Identities = 932/1393 (67%), Gaps = 16/1393 (1%) Strand=Plus/Plus Query 53384 CCTACATATGTATCGTATGGTCCTTCCTTCTCAGCTAGTTCACAACTCGCCTCTAATGCA 53443 ||| |||| | || ||||| || || || ||||| ||||| || || || | || Sbjct 510321 CCTTCATAGATTTCATATGGGCCAAGCTCCTTGGCTAGCTCACAGCTGGCTTCCAGGGCT 510380 Query 53444 CCGTAATAAATGGTTTCGAAGATCTTCTTATTTAGATCTTGTGCTTCCAGGCTATCAAAT 53503 || |||||||| ||||| | ||| | ||||||| || || || | || ||||| Sbjct 510381 CCATAATAAATAGTTTCAAGGATTTATTTATTTAATAACTGGGCCTCTATACTCTCAAAA 510440 Query 53504 GGATAATTTAAGAGAATAAACGCGTCTGCTAATCCTTGAACACCAATACCGATAGGTCTA 53563 ||||| | | || ||||| | ||| | | ||||| || ||||| || || |||||| Sbjct 510441 GGATATCTCATCAGGATAAAGGTATCTACCAGCCCTTGTACTCCAATTCCAATGGGTCTA 510500 Query 53564 TGTCTCTTATTAGAGATTTCAGCTTCTGGAATAGGATAATAATTAATATCTATAATTTTA 53623 || | ||||| || | | || ||||| | |||||| | | ||||| ||||||||| Sbjct 510501 TGGCATTTATTTGATAAATGTGCCTCTGGGACAGGATAGT---TTATATCGATAATTTTA 510557 Query 53624 TTGAGGTTTCTGACAATTACTTTGACCACATCCTTCAGTTTGAGAAAATCAAAT---TGT 53680 || | |||| |||||| ||||| || || || ||| ||| || || ||| Sbjct 510558 TTCAAATTTCGGACAATAGCTTTGGTGACTTCTGCCAATTTCTCAAAGTCGTATGTGTGT 510617 Query 53681 CCATCTATTACAAACATGTTCAATGCAATAGATGCCAGATTACAAACGGCTACCTCATTA 53740 | | | ||| |||| |||| || | || |||| |||||||| || |||||||| Sbjct 510618 TCTGGTGTAACATACATATTCAGGGCCAGGGAAGCCAAGTTACAAACTGCAACCTCATTT 510677 Query 53741 GCATCCGCATATTGTATTATCTCAGTGCAAAGATTACTACACTTGATGGTTCCTAAATTT 53800 | ||||| | ||| || ||||| || || || || ||||| ||||| | || Sbjct 510678 TTGCTGGTATATTCAACTATTTCTGTGCACAGGTTGCTGCATTTGATTGTTCCCAGGTTC 510737 Query 53801 TGTTGATTACTCTTTTTGTTACACGCATCCTTATAAAGAATGAATGGCGTACCAGTTTCA 53860 || || || ||||| ||||| | ||| || || || ||| | | ||||| | || Sbjct 510738 TGCTGGTTGCTCTTCCGATTACAGGAATCTTTGTAGAGCATGTACAGGGTACCCGGCTCT 510797 Query 53861 ATCTGGGATTCTATAATCGCTTTCCAGACGACACGAGCCTTTATTATAGATTTGT----A 53916 |||| || || | || | | ||| | |||| |||| | |||| | Sbjct 510798 GTCTGAGACTCAGTGATGGTGTACCAAAGCTGCTGAGCTTTTACAAC---TTTGCGAACA 510854 Query 53917 TCTCTTTTCTCTTTCGTATAGTGTATACAATCGTTCAAACTCGTCTCCCCAAACATTGTC 53976 | | || | |||| || | ||| || ||||| || ||||||||||| | || Sbjct 510855 TGACCTTGTT-TTTCATAACTTTCATATAACTTCTCAAATTCCTCTCCCCAAACCTCATC 510913 Query 53977 CAATCCAGGACATTCATCCGGACACATCAACGACCACTCTCCGTCATCCTTCACTCGTTT 54036 || |||||||| |||| ||||||| ||| ||||| || | | || |||||||| Sbjct 510914 CAGGCCAGGACACTCATTTGGACACAGCAAAGACCAGTCCTGATTAGTCTCTACTCGTTT 510973 Query 54037 CATAAAGAGATCAGGAATCCAAAGAGCTATAAATAGATCTCTGGTTCTATGTTCCTCGTT 54096 ||| ||||||| |||||||||| || | || |||| |||| | || || || || Sbjct 510974 CATGAAGAGATTCAGAATCCAAAGGGCAAAGAAAAGATTCCTGGCACGCTGCTCTTCTTT 511033 Query 54097 TCCTGTATTCTTTTTAAGATCGAGGAACGCCATAATATCAGAATGCCACGGTTCCAAGTA 54156 |||||| |||||||| | ||| || ||| | | || || ||||||| || |||| ||| Sbjct 511034 TCCTGTGTTCTTTTTTAAATCAAGAAACTCAAAGATGTCTAAATGCCAAGGCTCCAGGTA 511093 Query 54157 TATGGTCATAACTCCAGGCCGTTTGTTTCCTCCCTGATCTATGTATCTAGCGGTGTTATT 54216 || | | | ||||| | |||||||| || ||||| | || | ||| ||||| || Sbjct 511094 AATAGCAAATGCCCCAGGGCACTTGTTTCCACCTTGATCAACATAACGAGCTGTGTTGTT 511153 Query 54217 ATAAACTCTCAACATTGGAATAATACCATTGGATGCACCATTGGTCCCGGAGATATAGCT 54276 ||| ||||||| |||||| | || ||||| || ||||||||||| | || ||||| Sbjct 511154 ATACACTCTCAGCATTGGTACAAGGCCATTAGAATTGCCATTGGTCCCAGCTATGTAGCT 511213 Query 54277 TCCACTGGCACGAATATTACTAATTGATAGACCTATCCCCCCTGCCATTTTAGAGATTAA 54336 ||| | || | |||| ||| | | | ||| || || || || |||||| || || Sbjct 511214 GCCAGTAGCCCAAATACAACTCACAGTGACACCAATTCCTCCAGCGGATTTAGAAATCAA 511273 Query 54337 TGCGCATCGTTTTAACGTATCATAGATGCCCTCTATACTATCATCCATCATGTTAAGTAG 54396 ||| || | || | || ||||| ||||| || | || ||||| |||| | || || Sbjct 511274 TGCACACTGCTTCAGAGTGTCATAAATGCCTTCGGTGCTGTCATCTTTCATACTCAGAAG 511333 Query 54397 AAAACAGCTAGACATTTGGTGACGACTAGTTCCCGCATTAAATAAGGTAGGAGAAGCGTG 54456 |||||||| || | ||| | | | || | ||||| || | | |||||||| || Sbjct 511334 GAAACAGCTTGAAAGTTGTGGGCAGTTGGTACTAGCATTGAAGAGAGAGGGAGAAGCATG 511393 Query 54457 CGTAAACCATTTTTCAGAAAGTAGATTGTACGTCTCGATAGCTGAGTCTATATCCCATTG 54516 |||||||| || | ||||| || ||||| || || || || | ||||| || || Sbjct 511394 AGTAAACCACTTCTGGGAAAGAAGGTTGTATGTTTCAATTGCAGCCTCTATGTCTTCTTT 511453 Query 54517 ATGAATTCCTACTGCGACACGCATTAACATGTGCTGAGGTCTTTCAACGATCTTGTTGTT 54576 ||||| || || | || | ||| ||||| ||||| || |||||| | | || || Sbjct 511454 GTGAATCCCCACAGACACCCTCATCAACATATGCTGCGGCCTTTCAGCCACTTTTCCATT 511513 Query 54577 TATTTTCAGCAAGTAGGATTTTTCCAAAGTTTTAAAACCAAAATAGTTGTATGAAAAGTC 54636 || |||| ||| ||||| | |||| ||| ||||| ||||| || || || || || || Sbjct 511514 GATCTTCAACAAATAGGACCTCTCCAGAGTCTTAAAGCCAAAGTAATTATAAGAGAAATC 511573 Query 54637 TCGTTCGTAAATAATAACTGAGTTGAGTTTATCCTTATATTTGTTAACTACATCCATGGT 54696 || || || || || | || || || ||| |||| ||| | ||||| || Sbjct 511574 TCAGTCATAGATGATGGCAGAATTCAGGCGATCTTTATGGGCCAAAACAATATCCAGTGT 511633 Query 54697 AATACTT-GAAATAATCGGAGAATGTTTCCCATTTTTAGGATTGACATAGTTAAATAAAT 54755 |||| | | || ||||||||||| ||||| | ||||| | |||||| || | | Sbjct 511634 -TGACTTGGCCACCATGGGAGAATGTTTGCCATTATGTGGATTTATATAGTTGAAGAGGT 511692 Query 54756 CCTTCATCACTTC 54768 ||| ||| || || Sbjct 511693 CCTCCATTACATC 511705 Score = 167 bits (184), Expect = 3e-36 Identities = 298/430 (69%), Gaps = 9/430 (2%) Strand=Plus/Plus Query 52832 GGTTTCGTACGTAGATAGTACATTCCCGTTTTTAGACCGAGACTCCATCCGTAAAAATGC 52891 ||| | || | || ||| ||||| || || || | | | || |||| | || || || Sbjct 508938 GGTCTTGTCCTTAAATAATACATCCCAGTCTTCAAATCCAGCTTCCAAGCATAGAAGTGT 508997 Query 52892 ATACTTGTTAGTTTGGAATAACTCGGATCTGCTATATGGATATTCATAGATTGACTTTGA 52951 |||| || || ||| || | || || || || ||||| |||| | | || || ||| Sbjct 508998 GTACTGGTGAGCTTGTG-TAGTTGGGCTCAGCAATGTGGATGTTCAAAAACTGGCTCTGA 509056 Query 52952 TCGATGAAGGCTCCCCTGTCTGCAGCCATTTTTATGATCGTCTTTTGTGGAATTTCCCAA 53011 || ||||| || || | || |||||||| || | || || || || | |||||||| Sbjct 509057 TCAATGAAAGCACCACGATCAGCAGCCATCTTCAGGACAGTTTTCTGAGAGATTTCCCAT 509116 Query 53012 ATAGTTTTATAAACTCGCTTAATATCTTCTGGAAGGTTTG---TAT--TCTGAATAGATC 53066 | || ||||||| | || | || || |||| ||| ||| |||| ||||| | Sbjct 509117 ACTGTCTTATAAAGCTGGTTCAGGTCATCGGGAA--TTTCCACTATGCTCTGGATAGAGC 509174 Query 53067 CACCATCTACCATAATCCTATTCTTGATCTCATCATTCCATAATTTTCTCTCGGTTAAAA 53126 || | |||||| ||| || || || ||||||||||| | |||||| | | Sbjct 509175 CATTGCAGGCAATAATCTGATTTTTCATTTCTTCATTCCATAAGCCCCGCTCGGTAAGAT 509234 Query 53127 CTCTAAGGAGATGCGGATTAACTACTTGAAATTCTCCAGACAATACTCTCCGAGTGTAAA 53186 || | | || || ||||| || | ||||||||||| || || ||||| ||||||| | Sbjct 509235 CTTTCAATAG-TGAGGATTTACAATCTGAAATTCTCCTGATAAGACTCTTAGAGTGTAGA 509293 Query 53187 TATTACTGGTATACGGTTCCACAGACTCATTATTTCCCAAAATTTGAGCAGTTGATGCAG 53246 | || |||||||| ||||| | ||||||||| |||| ||| || ||||||||||| |||| Sbjct 509294 TGTTGCTGGTATAAGGTTCAATAGACTCATTTTTTCTCAAGATCTGAGCAGTTGAAGCAG 509353 Query 53247 TCGGCATAGG 53256 | | ||| || Sbjct 509354 TAGTCATGGG 509363 >seq187 Length=5094135 Score = 235 bits (260), Expect = 7e-57 Identities = 604/914 (66%), Gaps = 27/914 (3%) Strand=Plus/Plus Query 23788 TTTAAAAGTCAACATCTAAAGAAAAATGATTGTCTTCTTGA---GACATAACTCCCATTT 23844 ||||||||||| |||| ||| |||| ||| || || |||||||||||||| Sbjct 4782 TTTAAAAGTCAGCATCCCAAGTAAAAGAATTCTCCATAGGAATGGACATAACTCCCATAG 4841 Query 23845 TTTGGTATTCACCCACACGTTTTTCGAAAAAATTAGTTTTACCTTCTAATGATATATTT- 23903 | || || ||||| || || || || || || || || ||||| || || |||||| Sbjct 4842 TCTGATACTCACCAACTATCTTCTCAAAGAAGTTTGTCTTCCCTTCCAAAGAAATATTTC 4901 Query 23904 TCCATGAAATCGGATGGATTGGTAACATTATAGATTCTTT-TAAATCCCAATTCAGAAAT 23962 || ||||| || ||||||| || | | | ||| | || || | ||| || Sbjct 4902 TCTATGAAGTCAAATGGATTTTCCAC-TCGGAAAACCTTGCTGAAGCCTAGTTCCAGCAT 4960 Query 23963 CAATCTATCTGCGACAAACTCCATATATGTTTTCATCATTTCACAATTCATTCCTATAAG 24022 | || || || ||||||| || | |||||||| | | ||||| || ||| | Sbjct 4961 GAGCCTGTCAGCCACAAACTTGATGCACTGTTTCATCAAATTGGAGTTCATCCCGATAGG 5020 Query 24023 TTTAACTGGAAGAGCCACAGTAAGAAATTCTTGTTCAATAGAGACCGCGTCTGTTATAAT 24082 || || || | || | || || || || || ||||| || |||| | | ||| Sbjct 5021 CTTCACCGGCAAGCCCTCCGTGAGGAACTCCTGCTCAATGCCGATGGCGTTGATGACAAT 5080 Query 24083 AGATCTTACTGTTTCTTCACTCGGTGGATACAATAAATGTTTAAACATCAAACATGCGAA 24142 || || | | || ||| | || | || || ||||||| || |||| Sbjct 5081 CTCCCTCACCCTCTGCTCCAACGGCTTGTGCACCAGGTGCTTGAACATCAGGCACACGAA 5140 Query 24143 ATCGCAGTGTAGACCCTCGTCTCTACTAATTAATTCGTTGGAAAACGTGAGTCCGGGCAT 24202 || || | | ||||||| ||| ||||| | |||||||||||| ||||| || ||||| Sbjct 5141 GTCACAACGCAAGCCCTCGTATCTGCTAATGAGTTCGTTGGAAAAGGTGAGGCCAGGCAT 5200 Query 24203 TAGGCCACGCTTTTTAAGCCAAAATATGGACGCAAATGATCCAGAAAAGAAAATTCCTTC 24262 ||||| || || || ||||| || || ||||||| || |||||||||||||||||||| Sbjct 5201 GAGGCCCCGTTTCTTGAGCCAGAAGATCAACGCAAAAGAACCAGAAAAGAAAATTCCTTC 5260 Query 24263 TACTGCCGCAAAGGCAATAAGTCT-TTCTCCATAACCGG---CGCTGTCATGTATCCACT 24318 || | ||||||| | || | ||||||||| || | |||| |||||| Sbjct 5261 CACAGTGACAAAGGCCA-CCGTGTGTTCTCCATATGTGGCCTCTTTGTCCCCTATCCAGC 5319 Query 24319 TTTGAGCCCAATCGGCCTTCTTTTTTACACAAGGCATTGTCTCTATAGCATTAAAGAGAT 24378 ||||| || |||||||| || ||||| | || ||||| | ||||| |||||| Sbjct 5320 GCAACGCCCAGTCTGCCTTCTTCTTCACACAGGCCACGGTCTCAGTGGCATTGAAGAGAA 5379 Query 24379 AGtttttttCATTACTATCTTTAACATATGTATCAATCAAAAGACTATACATTTCCGAAT 24438 | | |||| | |||| ||| || || || || | || | ||||||||||||| Sbjct 5380 ACTCCCTTTCTTGGGAATCTCTAATGTAAGTGTCCATAAGGAGTGTGTACATTTCCGAAT 5439 Query 24439 GAATGTTTTCAATGGCCATTTGAAATCCGTAGAAACATCTAGCCTCGGTAATCTGTACTT 24498 | | |||||| ||||| || || || ||||||||||| | || || ||||| || |||| Sbjct 5440 GCAGGTTTTCCATGGCAATCTGGAAGCCGTAGAAACACCGGGCTTCTGTAATTTGAACTT 5499 Query 24499 CTATACAAAATCGTTCTGCTAAATTTTCATTCACTATTCCGTCACTGGCTGCAAAAA--- 24555 || |||||| || | | ||| ||| | ||||| || || ||||| | ||||| Sbjct 5500 CTTGGTTAAATCGCTCCACCAGATTCTCACTGACTATGCCATCGCTGGCAGGAAAAAAAA 5559 Query 24556 --ACGCCAATACA-----------TGTTTTATAAAATATTTTTCGTCTGGTGTTAGTTTA 24602 | |||| | ||| |||||| ||| | || || | | || Sbjct 5560 ATATAATAATAAAAAGTTAGAATGTGTGATATAAAGTATCTCTCTTCAGCCTTCAGGGCT 5619 Query 24603 TTCCAATCATTGATATCTTTAGATATATCCACTTCTTCCACTGTCCAAAATGATGCCTCT 24662 | ||| | | || ||||| || | ||| ||||| ||| |||||||||| || ||||| Sbjct 5620 TCCCAGTGCTGAATGTCTTTGGAAAGATCGACTTCCTCCGCTGTCCAAAAAGAAGCCTCG 5679 Query 24663 GCCTTTTTATACAT 24676 || || ||| |||| Sbjct 5680 GCTTTCTTACACAT 5693 >seq206 Length=4534510 Score = 174 bits (192), Expect = 2e-38 Identities = 717/1115 (64%), Gaps = 42/1115 (4%) Strand=Plus/Plus Query 53381 GATCCTACATATGTATCGTATGGTCCTTCCTTCTCAGCTAGTTCACAACTCGCCTCTAAT 53440 || ||| |||| || || ||||| || | || || ||||| ||||| || || || || Sbjct 2975816 GAGCCTTCATAGGTTTCATATGGGCCATGCTCCTTGGCTAGATCACAGCTGGCTTCCAAG 2975875 Query 53441 GCACCGTAATAAATGGTTTCGAAGATCTTCTTATTTAGATCTTGTGCTTCCAGGCTATCA 53500 || || ||||||| || | | ||| | |||||| | || | || | || ||| Sbjct 2975876 GCTCCATAATAAACAGTCACAATGATTTGGTTATTTCAAAACTGGGACTCTGGACTCTCA 2975935 Query 53501 AATGGATAATTTAAGAGAATAAACGCGTCTGCTAATCCTTGAACACCAATACCGATAGGT 53560 || | || | | || ||||| || |||| | | ||| || |||| | || || Sbjct 2975936 AAATGTTATCTCATCAGGATAAAAGCATCTGTGAGCCGTTGTACTCCAACTTCAATGGGG 2975995 Query 53561 CTATGTCTCTTATTAGAGATTTCAGCTTCTGGAATAGGATAATAATTAATATCTATAATT 53620 ||| ||||| || | | || |||| | ||| || || || || || |||||| Sbjct 2975996 AAATGATGTTTATTTGATAAGTGTGCCTCTGAGACAGGGTAGTATTTTATGTCAATAATT 2976055 Query 53621 TTATTGAGGTTTCTGACAATTACTTTGACCACATCCTTCAGTTTGAGAAAATCAAAT-TG 53679 ||||| || ||| |||||| ||| || || ||| ||| | | ||| || || Sbjct 2976056 TTATTCAGATTTTGGACAATATCTTCCGTGACTTCTGTCAATTTCTCATAGTCATATGTG 2976115 Query 53680 TCCATCTATTACAAACATGTTCAATGCAATAGATGCCAGATTACAAACGGCTACCTCAT- 53738 | | | | ||| |||| |||| || | || |||| ||||||| || ||||||| Sbjct 2976116 TTCTGATGTAACATACATATTCAGGGCCAGGGAAGCCAAGATACAAACTGCAACCTCATC 2976175 Query 53739 -TAGCATCCGCATATTGTATTATCTCAGTGCAAAGATTACTACACTTGATGGTTCCTAAA 53797 | || | |||| || || || ||| || || || || ||||| ||||| | Sbjct 2976176 TTTGCTG--GTCTATTCTACCATTTCTGTGTGCAGGTTGCTGCATTTGATTGTTCCCAGG 2976233 Query 53798 TTTTGTTGATTACTCTTTTTGTTACACGCATCCTTATAAAGAATGAATGGCGTACCAGTT 53857 || | || || ||||| |||| | | || ||| || || |||||||| ||||| || Sbjct 2976234 TTCTTCTGGTTGCTCTTCCAGTTATAAGAATGCTTGTAGAGCATGAATGGGGTACCCGTC 2976293 Query 53858 TCAATCTGGGATTCTATAATCGCTTTCCA-----GACGA-----CACGAGCCTTTATTAT 53907 | |||| || || || || | | ||| | || ||| | ||||| | Sbjct 2976294 TG--TCTGAGACTCAATGATGACATACCAATGCTGCTGAATTTTCACAA--CTTTACGAA 2976349 Query 53908 A--GAT-TTGTATCTCTTTTCTCTTTCGTATAGTGTATACAATCGTTCAAACTCGTCTCC 53964 || |||| | || | |||| | |||| |||| |||| || ||||| Sbjct 2976350 CACGACCTTGTTTTTCATAACTCT--CATATAAGGTAT---------CAAATTCCTCTCC 2976398 Query 53965 CCAAACATTGTCCAATCCAGGACATTCATCCGGACACATCAACGACCACTC-TCCGTCAT 54023 |||||| | ||||| |||||||| ||| | |||||||| || || || | | | Sbjct 2976399 CCAAACCTCGTCCAGACCAGGACACCCATTTTG-CACATCAAAGATCAGTCCTGAATAGT 2976457 Query 54024 CCTTCACTCGTTTCATAAAGAGATCAGGAATCCAAAGAGCTATAAATAGATCTCTGGTTC 54083 | | | || |||||| |||||||| |||||||| | || | || ||||| || | Sbjct 2976458 CTCTGA-TCATTTCATGAAGAGATCCAGAATCCAAGGTGCAAAGAAAAGATCCCTAGCAT 2976516 Query 54084 TATGTTCCTCGTTTCCTGTATTCTTTTTAAGATCGAGGAACGCCATAATATCAGAATGCC 54143 ||||| | ||||||||||||||| | ||| || ||| | | || || ||||| Sbjct 2976517 GCTGTTCTCCCTTTCCTGTATTCTTT---AAATCAAGAAACTCAAGCATTTCTAAATGCT 2976573 Query 54144 ACGGTTCCAAGTATAT-GGTCATAACTCCAGGCCGTTTGTTTCCTCCCTGATCTATGTAT 54202 | |||||| | || || || ||| | | || ||||| | |||| | || Sbjct 2976574 GAGCCTCCAAGGAAATAACAAATGAC-CCAAGGCACTTATTTCCACTTTGATGAACATAA 2976632 Query 54203 CTAGCGGTGTTATTATAAACTCTCAACATTGGAATAATACCATTGGATGCACCATTGGTC 54262 ||| | ||||| ||||| ||||||| |||||| |||| |||||| || ||||||||| Sbjct 2976633 CTATCTGTGTTGTTATACACTCTCAGCATTGGTATAAGACCATT-AATATTCCATTGGTC 2976691 Query 54263 CCGGAGATATAGCTTCCACTGGCACGAATATTACTAATTGATAGACCTATCCCCCCTGCC 54322 | | || |||| || | || |||| | ||| | | | ||| || || || || Sbjct 2976692 CAAGCTATGCAGCTATCAGTAGCCTGAATGTAACTCACAGCAACACCAATTCCACCAGCA 2976751 Query 54323 ATTTTAGAGATTAATGCGCATCGTTTTAACGTATCATAGATGCCCTCTATACTATCATCC 54382 |||||| || ||||| | | || | || | || ||||| | || || ||||| Sbjct 2976752 GATTTAGAAATCAATGCATACTGCTTCAGAGTGTAGTAAATGCCTTTGATGCTGTCATCT 2976811 Query 54383 ATCATGTTAAGTAGAAAACAGCTAGACATTTGGTGACGACTAGTTCCCGCATTAAATAAG 54442 |||| | || |||||| |||| || ||||| | | | || | | ||| || | Sbjct 2976812 TTCATAATCAGAAGAAAAAAGCTTGAAATTTGTGGGCAGTTGGTATCAGAATTGAAGAGA 2976871 Query 54443 GTAGGAGAAGCGTGCGTAAACCATTTTTCAGAAAG 54477 || |||||||| || ||||| || || | | |||| Sbjct 2976872 GTGGGAGAAGCATGAGTAAAGCACTTATTAAAAAG 2976906 Score = 113 bits (124), Expect = 5e-20 Identities = 253/375 (67%), Gaps = 5/375 (1%) Strand=Plus/Plus Query 52875 TCCATCCGTAAAAATGCATACTTGTTAGTTTGGAATAACTCGGATCTGCTATATGGATAT 52934 |||| || || || |||||||| || || | | |||| | || || || || ||||| | Sbjct 2975273 TCCAACCATAGAAGTGCATACTGGTGAGCTCGCTATAATTGGGCTCAGCCATGTGGATGT 2975332 Query 52935 TCATAGATTGACTTTGATCGATGAAGGCTCCCCTGTCTGCAGCCATTTTTATGATCGTCT 52994 ||| ||| || | ||||| | || || || || | |||||| || | || || | Sbjct 2975333 TCAAAGACTGGATCTGATCAACCAAAGCACCATGATCAGAAGCCATCTTGAGGACAGTTT 2975392 Query 52995 TTTGTGGAATTTCCCAAATAGTTTTATAAACTCGCTTAATATCTTCTGGAAGGTT-TGTA 53053 | || | |||||||| | ||||||| |||| | || || |||| | | || Sbjct 2975393 TCTGAGAGATTTCCCATCCGATCTTATAAAGCTGCTTCAGGTCATCAGGAATTTCCTCTA 2975452 Query 53054 T--TCTGAATAGATCCACCATCTACCATAATCCTATTCTTGATCTCATCATTCCATAATT 53111 | |||| ||||| ||| | |||||| ||| || || | | ||||||||| Sbjct 2975453 TGCTCTGGATAGAGCCATTGCAGGCAATAATCTGATTTTTCATTCCTTTATTCCATAAGC 2975512 Query 53112 TTCTCTCGGTTAAAACTCT-AAGGAGATGCGGATTAACTACTTGAAATTCTCCAGACAAT 53170 ||| | | | || | || ||| | ||||| || | | ||||||| | ||||| Sbjct 2975513 CCTGCTCCATAAGATCTTTCAATAAGA-GAGGATTTACAATCTTAAATTCTTCTGACAAG 2975571 Query 53171 ACTCTCCGAGTGTAAATATTACTGGTATACGGTTCCACAGACTCATTATTTCCCAAAATT 53230 ||| | | |||||| || || |||||||| |||| | ||||| |||||| ||||| || Sbjct 2975572 ACTTTTCAAGTGTAGATGTTGCTGGTATAAAGTTCAATAGACTTATTATTCCCCAAGATC 2975631 Query 53231 TGAGCAGTTGATGCA 53245 ||||||||||| ||| Sbjct 2975632 TGAGCAGTTGAAGCA 2975646 >seq146 Length=7541600 Score = 129 bits (142), Expect = 7e-25 Identities = 109/134 (81%), Gaps = 0/134 (0%) Strand=Plus/Minus Query 53150 ACTTGAAATTCTCCAGACAATACTCTCCGAGTGTAAATATTACTGGTATACGGTTCCACA 53209 || ||||||||||| ||||| ||||| |||||||| || || |||||||| ||||| | | Sbjct 3726378 ACCTGAAATTCTCCTGACAAGACTCTTCGAGTGTAGATGTTGCTGGTATAAGGTTCAATA 3726319 Query 53210 GACTCATTATTTCCCAAAATTTGAGCAGTTGATGCAGTCGGCATAGGTGCCACCAATAAA 53269 ||||| ||||||||||| || ||||||||||| ||||| ||||| || || | | || | Sbjct 3726318 GACTCGTTATTTCCCAAGATCTGAGCAGTTGAAGCAGTAGGCATTGGGGCAATAAGTAGA 3726259 Query 53270 CTATTTCTAAGACC 53283 || ||||| | ||| Sbjct 3726258 CTGTTTCTTATACC 3726245 Score = 96.9 bits (106), Expect = 4e-15 Identities = 100/131 (76%), Gaps = 0/131 (0%) Strand=Plus/Minus Query 54029 ACTCGTTTCATAAAGAGATCAGGAATCCAAAGAGCTATAAATAGATCTCTGGTTCTATGT 54088 ||||||||||| |||||||| ||||||||||| || | || |||||||||| | || Sbjct 3714759 ACTCGTTTCATGAAGAGATCTGGAATCCAAAGGGCAAAGAAAAGATCTCTGGCACGCTGC 3714700 Query 54089 TCCTCGTTTCCTGTATTCTTTTTAAGATCGAGGAACGCCATAATATCAGAATGCCACGGT 54148 || || |||||||| ||||| || | ||| || ||| | | || || ||||||| || Sbjct 3714699 TCTTCCTTTCCTGTGTTCTTCTTTAAATCAAGAAACTCAAAGATGTCTAAATGCCAAGGC 3714640 Query 54149 TCCAAGTATAT 54159 |||| ||| || Sbjct 3714639 TCCAGGTAAAT 3714629 >seq151 Length=7174217 Score = 120 bits (132), Expect = 4e-22 Identities = 99/121 (82%), Gaps = 0/121 (0%) Strand=Plus/Minus Query 24157 CCTCGTCTCTACTAATTAATTCGTTGGAAAACGTGAGTCCGGGCATTAGGCCACGCTTTT 24216 |||||||||| ||||| | |||||||||||| ||||| || ||||| || || || || | Sbjct 1182556 CCTCGTCTCTGCTAATGAGTTCGTTGGAAAAGGTGAGGCCAGGCATGAGTCCTCGTTTCT 1182497 Query 24217 TAAGCCAAAATATGGACGCAAATGATCCAGAAAAGAAAATTCCTTCTACTGCCGCAAAGG 24276 | ||||| || || |||||||| || ||||||||||| || ||||| || || ||||||| Sbjct 1182496 TGAGCCAGAAGATTGACGCAAAAGAACCAGAAAAGAAGATGCCTTCCACAGCGGCAAAGG 1182437 Query 24277 C 24277 | Sbjct 1182436 C 1182436 Score = 95.1 bits (104), Expect = 1e-14 Identities = 93/120 (78%), Gaps = 0/120 (0%) Strand=Plus/Minus Query 24395 ATCTTTAACATATGTATCAATCAAAAGACTATACATTTCCGAATGAATGTTTTCAATGGC 24454 |||||||| || || ||||| | ||||| |||||||||||||| |||||||| || || Sbjct 1180952 ATCTTTAATGTAAGTGTCAATAAGCAGACTGTACATTTCCGAATGTATGTTTTCCATAGC 1180893 Query 24455 CATTTGAAATCCGTAGAAACATCTAGCCTCGGTAATCTGTACTTCTATACAAAATCGTTC 24514 || || || ||||||||||| | || || ||||| || |||||| | |||||| || Sbjct 1180892 AATCTGGAAGCCGTAGAAACAACGGGCTTCTGTAATTTGAACTTCTTGGCTAAATCGCTC 1180833 >seq64 Length=12756018 Score = 105 bits (116), Expect = 8e-18 Identities = 213/315 (68%), Gaps = 1/315 (0%) Strand=Plus/Minus Query 24396 TCTTTAACATATGTATCAATCAAAAGACTATACATTTCCGAATGAATGTTTTCAATGGCC 24455 ||| | | ||| ||||| || | | || ||||| || || |||| || || ||| Sbjct 2273454 TCTCTGATATAGGTATCTATGAGCAAGCTGTACATCTCTGAGTGAACATTCTCGATGAGG 2273395 Query 24456 ATTTGAAATCCGTAGAAACATCTAGCCTCGGTAATCTGTACTTCTATACAAAATCGTTCT 24515 || || || |||||||| || | ||||| | | ||| || || | || || || Sbjct 2273394 ATCTGGAAGCCGTAGAAGCAGCGGGCCTCAGGGACCTGCACCTCCTGGCTGAAGCGCTCC 2273335 Query 24516 GCTAAATTTTCATTCACTATTCCGTCACTGGCTGCAAAAA-ACGCCAATACATGTTTTAT 24574 | || |||||||| || ||||| ||| | |||||||||| | || || || || || Sbjct 2273334 ACCAAGTTTTCATTTACAATTCCATCATTTGCTGCAAAAAGAGGCTAAGACGTGAGAAAT 2273275 Query 24575 AAAATATTTTTCGTCTGGTGTTAGTTTATTCCAATCATTGATATCTTTAGATATATCCAC 24634 ||| ||||| || || || | || |||| ||| | | | ||| || |||| ||| || Sbjct 2273274 AAAGTATTTCTCATCCGGCTTGAGCTTATGCCAGTGAGGCAGATCCTTTGATAGATCAAC 2273215 Query 24635 TTCTTCCACTGTCCAAAATGATGCCTCTGCCTTTTTATACATATTCCAGATGTCATGATA 24694 || || | ||||| || |||| || ||| || ||||| ||||||||||| | || Sbjct 2273214 CTCCTCTGCCGTCCAGAAGGATGTCTGCACCTGCTTGTACATCTTCCAGATGTCGGGGTA 2273155 Query 24695 TTGAATTGGAAAAAT 24709 || || || || || Sbjct 2273154 CTGGATGGGGAAGAT 2273140 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 593668647454800