Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Octodon_20degus_20[refseq_20GCF_5F000260255.1_202012-05-01] 7,135 sequences; 2,995,889,303 total letters Query= NC_001623.1 Length=133894 Score E Sequences producing significant alignments: (Bits) Value seq203 82.4 7e-11 seq163 82.4 7e-11 >seq203 Length=4329578 Score = 82.4 bits (90), Expect = 7e-11 Identities = 147/215 (68%), Gaps = 0/215 (0%) Strand=Plus/Plus Query 28959 AAAATGCAAATATTCATCAAAACATTGACGGGCAAAACCATTACCGCCGAAACGGAACCC 29018 || ||||| || ||| | ||||| | ||||| || ||||| || ||| |||||| Sbjct 2169234 AAGATGCAGATTTTCGTGAAAACCCTTACGGGGAAGACCATCACGCTCGAGGTTGAACCC 2169293 Query 29019 GCAGAGACGGTGGCCGATCTTAAGCAAAAAATTGCCGATAAAGAAGGTGTGCCCGTAGAT 29078 | || || | | || | ||| || || ||||| ||||| | || ||| Sbjct 2169294 TCGGACACTATAGAAAATGTAAAGGCCAAGATCCAGGATAAGGAAGGAATTCCTCCTGAT 2169353 Query 29079 CAACAAAGACTTATCTTTGCGGGCAAACAACTGGAAGATTCCAAAACTATGGCCGATTAC 29138 || ||||| || |||||||| || || || ||||||||| || || | |||||| Sbjct 2169354 CAGCAAAGGCTGATCTTTGCTGGTAAGCAGCTGGAAGATGGACGTACCTTGTCTGATTAC 2169413 Query 29139 AATATTCAGAAGGAATCTACTCTTCACATGGTGTT 29173 || ||||| ||||| ||||||||||| | ||||| Sbjct 2169414 AACATTCAAAAGGAGTCTACTCTTCATCTTGTGTT 2169448 >seq163 Length=6182668 Score = 82.4 bits (90), Expect = 7e-11 Identities = 104/143 (73%), Gaps = 0/143 (0%) Strand=Plus/Plus Query 29046 AAAATTGCCGATAAAGAAGGTGTGCCCGTAGATCAACAAAGACTTATCTTTGCGGGCAAA 29105 || |||| ||||| ||||| | || |||||||||| || |||||||| || || Sbjct 5535159 AAGATTGAGGATAAGGAAGGAATTCCTCCTGATCAACAAAAGCTGATCTTTGCTGGTAAG 5535218 Query 29106 CAACTGGAAGATTCCAAAACTATGGCCGATTACAATATTCAGAAGGAATCTACTCTTCAC 29165 |||||||||||| | ||| || | || |||||||| || ||||| ||||| ||||| Sbjct 5535219 CAACTGGAAGATGGACATACTTTGTCTGACTACAATATCCAAAAGGAGTCTACCCTTCAT 5535278 Query 29166 ATGGTGTTACGATTACGAGGAGG 29188 | || ||| || | || || || Sbjct 5535279 CTTGTATTAAGACTCCGTGGTGG 5535301 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 428298752838425