Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Octodon_20degus_20[refseq_20GCF_5F000260255.1_202012-05-01] 7,135 sequences; 2,995,889,303 total letters Query= NC_001731.1 Length=190289 Score E Sequences producing significant alignments: (Bits) Value seq109 336 3e-87 seq8 280 2e-70 seq171 154 2e-32 seq100 116 5e-21 seq90 104 3e-17 seq7 84.2 3e-11 >seq109 Length=10228628 Score = 336 bits (372), Expect = 3e-87 Identities = 386/515 (75%), Gaps = 8/515 (2%) Strand=Plus/Plus Query 83057 AGCAGGGCCTCGATGTCGGGCTCCACGGCCAGGGTCTGGCAGCGGTGGCTGTACCTGCGC 83116 |||||||| |||||||| ||||| | | ||| | ||| | ||||| |||||||| Sbjct 8003318 AGCAGGGCTTCGATGTCAGGCTCAGTGTCGGTGGTGGGAAAGCAGCGGCTGCACCTGCGC 8003377 Query 83117 ACGGGCGTGCCGTCAGCACCCACCAAGAACTTCTCGAAGTTCCAGGCCACGTCGTTGCGG 83176 || ||| || || | ||| ||| |||| |||||||||||||||||||||| |||||| Sbjct 8003378 ACCGGCACACCATCGGG-CCCGCCAGGAACGTCTCGAAGTTCCAGGCCACGTCTTTGCGG 8003436 Query 83177 CACACTGGAGACCAGGCAATGAGCTGGGGGTCGCTCACGAGC---GTGCTCATGTCGTCG 83233 ||||| || |||||| || | || ||||||| | | |||| |||| ||||||| Sbjct 8003437 CACACCGGGGACCAGATGATAATCTTGGGGTCGGT-AGGAGCACAGTGCG---GTCGTCG 8003492 Query 83234 CTAGGCGCCGGCAGGGCCTCTCGTAGGAAGGCGAAGAGCGGATGTGCCCTTGCACCGTTG 83293 || || ||| | ||||||||||| ||||||| |||||| ||||||||| | ||||| | Sbjct 8003493 CTGGGAGCCAGGAGGGCCTCTCGGAGGAAGGTGAAGAGTGGATGTGCCTTCGCACCATGC 8003552 Query 83294 ACCTCGCACTTCTCGAAGAGCATAAAGTTCGGCTCGAAGCCGTTCCCAGGACGGACGTGC 83353 ||||||| |||||||||||| | | | | |||||| | || || || |||||| Sbjct 8003553 ACCTCGCGCTTCTCGAAGAGTGTGAGGCTGGGCTCGCACCCACCACCGGGCCGGACGCAT 8003612 Query 83354 TTCAGGGAAGGCAAGATCTCGGCATTCTGGGCGTTTTCCTGGTGACCGAACTGGTTACAC 83413 || || || |||| ||||| |||||| |||| | |||||||| ||||||||||| ||| Sbjct 8003613 TTGAGCAAATGCAAAATCTCTTCATTCTCGGCGGTATCCTGGTGTCCGAACTGGTTGCAC 8003672 Query 83414 GGGAACCCAAGCACTACCAGCCCCCGAGCTCCTAGGCGCCGCTGCAGCTCGTTCATCTGA 83473 ||||| || || || ||||| |||| || || |||||| |||||| ||||||||||| Sbjct 8003673 GGGAAGCCGAGAACCACCAGGCCCCTAGGCCCAAGGCGCGCCTGCAGATCGTTCATCTGG 8003732 Query 83474 GTGTACTCCCGGACCGTGCTACCTCAGAGGGACGCTACGTTCTCGATGAGCAAGACCCGG 83533 ||| | |||||||||| | || ||||| || || ||||| || |||||| ||| | Sbjct 8003733 GTGAAGTCCCGGACCGCTGTGCCGCAGAGAGATGCCACGTTTTCAGTGAGCAGCACCTTG 8003792 Query 83534 CCCCGTAAGAAGCCTAAGCTCACAGGTTCTCCTCC 83568 ||||| | | |||| | |||| || || || || Sbjct 8003793 CCCCGCAGGGAGCCGAGACTCAGTGGCTCCCCACC 8003827 >seq8 Length=30914638 Score = 280 bits (310), Expect = 2e-70 Identities = 265/338 (78%), Gaps = 0/338 (0%) Strand=Plus/Plus Query 83057 AGCAGGGCCTCGATGTCGGGCTCCACGGCCAGGGTCTGGCAGCGGTGGCTGTACCTGCGC 83116 |||||||| |||||||| ||||| | | | | ||| | ||||| ||||||| ||||| Sbjct 14662669 AGCAGGGCTTCGATGTCAGGCTCAATGTCGATGGTGGGAAAGCGGCGGCTGTATCTGCGA 14662728 Query 83117 ACGGGCGTGCCGTCAGCACCCACCAAGAACTTCTCGAAGTTCCAGGCCACGTCGTTGCGG 83176 || ||| || |||| ||||||| ||||||||| |||||||||||||||||||||||| Sbjct 14662729 ACCGGCACACCATCAGGGCCCACCAGGAACTTCTCAAAGTTCCAGGCCACGTCGTTGCGG 14662788 Query 83177 CACACTGGAGACCAGGCAATGAGCTGGGGGTCGCTCACGAGCGTGCTCATGTCGTCGCTA 83236 ||||| || |||||| || | || ||||||| ||| ||||| | ||||||||| Sbjct 14662789 CACACCGGGGACCAGATGATAAACTTGGGGTCGGTCATGAGCGCAGTGGGGTCGTCGCTG 14662848 Query 83237 GGCGCCGGCAGGGCCTCTCGTAGGAAGGCGAAGAGCGGATGTGCCCTTGCACCGTTGACC 83296 || ||||| ||||||||||| ||||||| |||||| ||||||||| | |||||||| ||| Sbjct 14662849 GGAGCCGGAAGGGCCTCTCGAAGGAAGGTGAAGAGTGGATGTGCCTTCGCACCGTTCACC 14662908 Query 83297 TCGCACTTCTCGAAGAGCATAAAGTTCGGCTCGAAGCCGTTCCCAGGACGGACGTGCTTC 83356 |||||||||||||| || | ||||| |||||||| || || || ||||||| || Sbjct 14662909 TCGCACTTCTCGAACAGTGTGAAGTTGGGCTCGAACCCACCACCGGGCCGGACGTATTTG 14662968 Query 83357 AGGGAAGGCAAGATCTCGGCATTCTGGGCGTTTTCCTG 83394 || || ||| ||||| | |||| |||||| ||||| Sbjct 14662969 AGCAAATGCAGAATCTCTTCGTTCTTGGCGTTCTCCTG 14663006 Score = 168 bits (186), Expect = 8e-37 Identities = 162/208 (78%), Gaps = 0/208 (0%) Strand=Plus/Plus Query 83391 CCTGGTGACCGAACTGGTTACACGGGAACCCAAGCACTACCAGCCCCCGAGCTCCTAGGC 83450 ||||||| ||||||||||| |||||||| || || || ||||| |||| || ||| |||| Sbjct 14663219 CCTGGTGTCCGAACTGGTTGCACGGGAAGCCGAGAACCACCAGGCCCCTAGGTCCAAGGC 14663278 Query 83451 GCCGCTGCAGCTCGTTCATCTGAGTGTACTCCCGGACCGTGCTACCTCAGAGGGACGCTA 83510 || |||||| ||||||||||| ||| | |||||||||||| | |||||||| ||||| | Sbjct 14663279 GCGCCTGCAGATCGTTCATCTGGGTGAAGTCCCGGACCGTGGTGCCTCAGAGAGACGCCA 14663338 Query 83511 CGTTCTCGATGAGCAAGACCCGGCCCCGTAAGAAGCCTAAGCTCACAGGTTCTCCTCCGG 83570 | || || ||||||| ||| |||||| | | |||| | |||| || || || || | Sbjct 14663339 CATTTTCAATGAGCAGCACCTTGCCCCGCAGGGAGCCAAGACTCAGTGGCTCCCCACCCG 14663398 Query 83571 TAATCGGGCGTGCTGAGAAGGCGTACAC 83598 | |||||| || ||||| | |||||| Sbjct 14663399 CTAGCGGGCGCGCGGAGAAAGAGTACAC 14663426 >seq171 Length=6305026 Score = 154 bits (170), Expect = 2e-32 Identities = 155/200 (78%), Gaps = 1/200 (1%) Strand=Plus/Minus Query 83057 AGCAGGGCCTCGATGTCGGGCTCCACGGCCAGGGTCTGGCAGCGGTGGCTGTACCTGCGC 83116 |||||||| |||||||| ||||| | | | | ||| | ||||||||||||| |||||| Sbjct 5663982 AGCAGGGCTTCGATGTCAGGCTCAATGTCGATGGTGGGAAAGCGGTGGCTGTATCTGCGC 5663923 Query 83117 ACGGGCGTGCCGTCAGCACCCACCAAGAACTTCTCGAAGTTCCAGGCCACGTCGTTGCGG 83176 || ||| || |||| ||||||| ||||||||| |||||||||||||||||||||||| Sbjct 5663922 ACCGGCACACCATCAGGGCCCACCAGGAACTTCTCAAAGTTCCAGGCCACGTCGTTGCGG 5663863 Query 83177 CACACTGGAGACCAGGCAATGAGCTGGGGGTCGCTCACGAGCGTGCTCATGTCGTCGCTA 83236 ||||| || ||||| || | || ||||| | ||| |||||| | ||| || | Sbjct 5663862 CACACCGG-GACCAAATGATAAACTTGGGGTTGGTCATGAGCGTAGTGGGGTCATCTGTG 5663804 Query 83237 GGCGCCGGCAGGGCCTCTCG 83256 || || || ||||||||||| Sbjct 5663803 GGAGCTGGGAGGGCCTCTCG 5663784 >seq100 Length=10475098 Score = 116 bits (128), Expect = 5e-21 Identities = 256/376 (68%), Gaps = 11/376 (3%) Strand=Plus/Minus Query 83143 GAACTTCTCGAAGTTCCAGGCCACGTCGTTGCGGCACACTGGAGACCAGGCAATGAGCTG 83202 ||||||||| |||||| || ||| || ||| ||||||||| ||| | ||||| | Sbjct 7178212 GAACTTCTCAGAGTTCCTGGACACATCTGAGCGCCACACTGGACTCCACGTGATGAGGTT 7178153 Query 83203 GGGGTCGCTCACGAGCGTGCTCATGTCGTCGCTAGGCGCCGGCAGGGCCTCTCGT--AGG 83260 ||| || || ||| | || ||| ||| ||| | || || || | || | ||| Sbjct 7178152 GGGATCAGTCTTGAGGGCGCATGGGTCATCGTAAGG-GTAGG-AGAGCTTGTCCTTCAGG 7178095 Query 83261 AAGGCGAAGAGCGGATGTGCCCT-TGCACCGTTGACCTCGCACTTCTCGAAGAGCATAAA 83319 |||||||| || || | | ||| || || ||||| ||||||| || ||| | || Sbjct 7178094 TGGGCGAAGACAGGGTGCTCGTTCTGC-CCATTCACCTCACACTTCTGGAGGAGAGTGAA 7178036 Query 83320 GTTCGGCTCGAAGCCGTTCCCAGGACGGACGTGCTTCAGGGAAGGCAAGATCTCGGCATT 83379 | | |||| |||||| ||| || ||||||| ||| || || |||||| |||| Sbjct 7178035 GGTGGGCTGGAAGCCACGCCCGGGGCGGACGTACTTGAGACTGCTCAGGATCTCTTCATT 7177976 Query 83380 CTGGGCGTTTTCCTGGTGACCGAACTGGTTACACGGGAACCCAAGCACTACCAGCCCCCG 83439 || ||||||||| || ||||| ||||| || || || ||||| ||||||| | || Sbjct 7177975 TTGACAGTTTTCCTGATGTCCGAATTGGTTGCAGGGAAAGCCAAGAGCTACCAGGCGCCT 7177916 Query 83440 AGCTCCTAGGCGCCGCTGCAGCTCGTTCATCTGAGTGTACTCCCGGACCGTGCTACCTCA 83499 | | ||| |||||||||||| | | ||| | | | ||| || || | |||| Sbjct 7177915 GGGG---AAGCGGCGCTGCAGCTCGCTGAGCTGGGCGAAGTCCTGGGTGGTCGTGCCTC- 7177860 Query 83500 GAGGGACGCTACGTTC 83515 ||||| || |||||| Sbjct 7177859 -AGGGAGGCCACGTTC 7177845 >seq90 Length=11647642 Score = 104 bits (114), Expect = 3e-17 Identities = 190/268 (71%), Gaps = 8/268 (3%) Strand=Plus/Minus Query 50410 GCACCTGCGCAAGATGTACG-GCGCAAGCAGGTCTATCTACAACTTCGCTGTGCGTATGC 50468 ||| ||||||| || || | | ||| || ||||||| ||||||||| || ||| Sbjct 6342270 GCAGCTGCGCAGCATCTATGAGAGCA-GCCTGTCTATCGGCAACTTCGCCTCCCGCCTGC 6342212 Query 50469 TCGTGTACATGTTTCCAGAGCTCTTTACTGCGGAGAACCTGCACACGCACTTCAACTGCT 50528 | ||| || | || || |||||||| || |||||||||| | ||| | ||||||| Sbjct 6342211 TGGTGCACCTCTTCCCTGAGCTCTTCACCCATGAGAACCTGCGAAAGCAGTACAACTGCA 6342152 Query 50529 ACGGCTCCATGGGCAAGC-GCAGGCTCGACCC-GCTACGCCTGCGCTTGCTCCGGCACTA 50586 ||||||| |||| ||| |||| || ||||| ||| ||| | || |||| ||||| Sbjct 6342151 GCGGCTCCCTGGGGAAGAAGCAG-CTGGACCCTGCT-CGCATCAAGCTGATCCGCCACTA 6342094 Query 50587 TGTGCAGTTGCTGCACCCGGCGGCGCGCAACGAGCGCGTGTGGATCACAAAGTTCCT-GG 50645 ||||||| |||| | || ||| || || || ||||||| | ||||| | || Sbjct 6342093 TGTGCAGCTGCTCTATCCCCGGGCCAAAAATGACCGTGTGTGGACCCTGGAGTTCGTAGG 6342034 Query 50646 CGTGCCTGGACGAGCGCTGCCGGCGCCG 50673 | | ||||| ||||||||| ||||||| Sbjct 6342033 CAAG-CTGGATGAGCGCTGCAGGCGCCG 6342007 >seq7 Length=34356042 Score = 84.2 bits (92), Expect = 3e-11 Identities = 97/130 (75%), Gaps = 3/130 (2%) Strand=Plus/Minus Query 83391 CCTGGTGACCGAACTGGTTACACGGGAACCCAAGCACTACCAGCCCCCGAGCTCCTAGGC 83450 |||| || ||||| ||||| || ||||| ||||| |||||||| | || | | || Sbjct 17695457 CCTGATGTCCGAATTGGTTGCAAGGGAAGCCAAGAACTACCAGGCGCCTGGGA---AAGC 17695401 Query 83451 GCCGCTGCAGCTCGTTCATCTGAGTGTACTCCCGGACCGTGCTACCTCAGAGGGACGCTA 83510 | | |||||||||||| | ||| ||| | |||||| || | ||||||||||| || | Sbjct 17695400 GGCACTGCAGCTCGTTGAGCTGGGTGAAGTCCCGGGTGGTCGTGCCTCAGAGGGAGGCCA 17695341 Query 83511 CGTTCTCGAT 83520 ||||||| || Sbjct 17695340 CGTTCTCAAT 17695331 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 608742502935400