Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Octodon_20degus_20[refseq_20GCF_5F000260255.1_202012-05-01] 7,135 sequences; 2,995,889,303 total letters Query= NC_001962.1 Length=128413 Score E Sequences producing significant alignments: (Bits) Value seq203 82.4 6e-11 >seq203 Length=4329578 Score = 82.4 bits (90), Expect = 6e-11 Identities = 147/215 (68%), Gaps = 0/215 (0%) Strand=Plus/Plus Query 25032 AAAATGCAAATATTCATCAAAACATTGACGGGCAAAACCATTACCGCCGAAACGGAACCC 25091 || ||||| || ||| | ||||| | ||||| || ||||| || ||| |||||| Sbjct 2169234 AAGATGCAGATTTTCGTGAAAACCCTTACGGGGAAGACCATCACGCTCGAGGTTGAACCC 2169293 Query 25092 GCAGAGACGGTGGCCGATCTCAAGCAAAAAATTGCCGATAAAGAAGGTGTGCCCGTAGAT 25151 | || || | | || | ||| || || ||||| ||||| | || ||| Sbjct 2169294 TCGGACACTATAGAAAATGTAAAGGCCAAGATCCAGGATAAGGAAGGAATTCCTCCTGAT 2169353 Query 25152 CAACAAAGACTTATCTTTGCGGGCAAACAATTGGAAGATTCCAAAACTATGGCCGATTAC 25211 || ||||| || |||||||| || || || |||||||| || || | |||||| Sbjct 2169354 CAGCAAAGGCTGATCTTTGCTGGTAAGCAGCTGGAAGATGGACGTACCTTGTCTGATTAC 2169413 Query 25212 AATATTCAAAAGGAATCTACTCTTCACATGGTGTT 25246 || ||||||||||| ||||||||||| | ||||| Sbjct 2169414 AACATTCAAAAGGAGTCTACTCTTCATCTTGTGTT 2169448 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 410761078008890