Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Octodon_20degus_20[refseq_20GCF_5F000260255.1_202012-05-01] 7,135 sequences; 2,995,889,303 total letters Query= NC_001987.1 Length=108409 Score E Sequences producing significant alignments: (Bits) Value seq74 181 7e-41 seq107 118 7e-22 >seq74 Length=13126430 Score = 181 bits (200), Expect = 7e-41 Identities = 444/663 (67%), Gaps = 10/663 (2%) Strand=Plus/Plus Query 97007 TTGGGAAAGGCCTGGGAGTTCGCGT--AAGCTGC-TCTGTGAGAGCATCAATGTGATTCA 97063 ||||||||||||| || ||| ||| |||||| ||| | || | | |||||||||| Sbjct 9227888 TTGGGAAAGGCCTTGG--TTCTCGTTGAAGCTGAGTCT-TCAGCGGCTTGATGTGATTCA 9227944 Query 97064 CATAAATGTGAGCATCTCCTAAAGTGTGAATAAATTCTCCAGGAACTAAATCAGTGACAT 97123 || || || || ||||| |||||||| | || ||||| || | | ||||| | Sbjct 9227945 GGTAGATATGTGCGTCTCCCAAAGTGTGCACGAAGTCTCCTGGCTTCAGGCCTGTGACGT 9228004 Query 97124 GGGCGATCATACAAGTTAATAGAGAATAGCTAGCAATGTTAAAAGGCACCCCTAGTCCCA 97183 | |||| ||| | || | || | |||| || ||||| || || || || || |||| Sbjct 9228005 GCGCGACCATGTAGGTGAGCAGCGCGCAGCTGGCGATGTTGAAGGGTACGCCCAGGCCCA 9228064 Query 97184 TATCAGCTGATCTTTGATATAACTGACAGGAAAGCTTTCCAT-CACACACATAAAACTGA 97242 | || |||| | || || | ||| ||||| |||| || | ||| ||| || ||||| Sbjct 9228065 TGTCCCCTGACCGCTGGTACAGCTGGCAGGACAGCTCCCCGTTCAC-CACGTAGAACTGG 9228123 Query 97243 CTCAATACATGACAGGGGGGCAACGCCATTTTTGGAACATCTAAGACATTCCAAGCACAC 97302 | || || ||||| |||| |||||| || | |||| ||||| |||||| Sbjct 9228124 CACAGGGTGTGGCAGGGAGGCAGCGCCATCAGAGGGAGATCTTTTGGGTTCCAGGCACAC 9228183 Query 97303 ATCAACATTCTTCTATCGGTTGGGTTTGTGTGTATGGTATTAATTATCTGCTTTAATTGA 97362 || | || ||||| ||| | |||| || | ||||| || || | | || | || Sbjct 9228184 ATGATGATCCTTCTGTCGTTAGGGTCGGTTTTGATGGTGTTGATCACGTTCTGCAGCTGG 9228243 Query 97363 TCAACGCCTTCTCCACCATAATTGTGCTTAAG-ACCTTGATATTCTGCTCCAAAATGCCT 97421 ||||| |||| || |||| || | | | ||| || ||||| || |||||||| Sbjct 9228244 TCAACTCCTTGACCCGAGTAATC-TGAGTCCGTATCTTTGTAGTCTGCCCCGAAATGCCT 9228302 Query 97422 CCATTGGAATCCATAAACAGGTCCAAGGTCTCCTTCTTCTCTATCACAGAAACCAAGCTT 97481 ||| ||||| ||||| || || || ||||| ||||||| | | | || || || | Sbjct 9228303 CCACTGGAAGCCATAGACGGGGCCCAGGTCCCCTTCTTTGCGGCTAGAAAACCCCAGGCT 9228362 Query 97482 ATCTAAATAGGACCTAGATCCATTTGCATCCCAAATGTGCACACCAGATGCTGCAAGCTC 97541 || | | || || ||||| |||||||| || | ||| || | || ||||| Sbjct 9228363 GTCCAGGAAATCCCGGGACCCATTGGCATCCCAGATCTTCACTCCTTTGGATGACAGCTC 9228422 Query 97542 TTTGCTGTCAGTAGATCCTCTGATAAACCACAACAATTCTTCCACAACACCTCTCCAAAA 97601 ||| | |||||||| |||||||||||| || ||||||| || ||| |||| || Sbjct 9228423 CTTGGCATTTGTAGATCCCTTGATAAACCACAGCAGCTCTTCCAGAATACCCTTCCAGAA 9228482 Query 97602 TACTCTCTTAGTTGTTAAGAGAGGAAAATCCTTTTCTAAGCTGTATCTAGACTGCATTCC 97661 ||| | ||| || || | || ||||| || | | | |||||| | | |||||| || Sbjct 9228483 TACACGCTTGGTGGTCAGCAGGGGAAATTCATCTCGCAGGCTGTAGCGCGCCTGCATGCC 9228542 Query 97662 AAA 97664 || Sbjct 9228543 GAA 9228545 >seq107 Length=10030941 Score = 118 bits (130), Expect = 7e-22 Identities = 390/595 (66%), Gaps = 31/595 (5%) Strand=Plus/Minus Query 97007 TTGGGAAAGGCCTGGGAGTTCGCGT--AAGCTGCTCTGTGAG-AGCATCAATGTGATTCA 97063 ||||||||||||| | ||| || |||||| | | || ||| ||||||||||||| Sbjct 3003392 TTGGGAAAGGCCTTGA--TTCTTGTTGAAGCTGAGTTTTCAGCAGC-TCAATGTGATTCA 3003336 Query 97064 CATAAATGTGAGCATCTCCTAAAGTGTGAATAAATTCTCCAGGAACTAAATCAGTGACAT 97123 || || || |||||||| ||||| || | ||| |||| |||||| Sbjct 3003335 GGTAGATATGTGCATCTCCCAAAGTATGCACAAAGCCTCC--------------TGACAT 3003290 Query 97124 GGGCGATCATACAAGTTAATAGAGAATAGCTAGCAATGTTAAAAGGCACCCCTAGTCCCA 97183 | |||| || | || | || | ||||| | ||||| || ||||| || || |||| Sbjct 3003289 GCGCGACCAAGTAGGTGAGCAGCGCGTAGCTGACGATGTTGAAGGGCACTCCCAGGCCCA 3003230 Query 97184 TATCAGCTGATC--TTTGATATAACTGACAGGAAAGCTTTCCAT-CACACACATAAAACT 97240 |||| |||| | | || || ||| ||||| |||| |||| ||| ||| ||||||| Sbjct 3003229 TATCCCCTGACCACTGTGGTACGGCTGGCAGGACAGCTCCCCATTCAC-CACGTAAAACT 3003171 Query 97241 GACTCAATACATGACAGGGGGGCAACGCCATTTTTGGAACATCTAAGACATTCCAAGCAC 97300 | || || ||||| |||| ||||| || | |||| | || || |||| Sbjct 3003170 AGCACAGGGTGTGGCAGGGAGGCAGAGCCATCAGAGGGAGATCTTTCAGGTTTCAGGCAC 3003111 Query 97301 ACATCAACATTCTTCTATCGGTTGGGTTTGTGTGTATGGTATTAATTATCTGCTTTAATT 97360 |||| | || ||||| || ||||| || | ||||| || || | | || | | Sbjct 3003110 ACATGATGATCCTTCTGTCATCAGGGTTGGTTTTGATGGTGTTGATCACGTTCTGCAGCT 3003051 Query 97361 GATCAACGCCTTCTCCACCATAAT-TGTGCTTAAGACCTTGATATTCTGCTCCAAAATGC 97419 | ||| | |||| || |||| || | | | ||||| || || || | |||||| Sbjct 3003050 GGTCATCTCCTTGACCTGAGTAATCTGAG-TCCATACCTTCGTAGTCAGCCCTGAAATGC 3002992 Query 97420 CTCCATTGGAATCCATAAACAGGTCCAAGGTCTCCTTCTTCTCTATCAC-AGAAA--CCA 97476 ||||| ||||| ||| | || || || ||||| || |||| | | ||||| || Sbjct 3002991 CTCCACTGGAAGCCACAGACGGGGCCCAGGTCCCC--CTTCCTGGTGGCTAGAAAACCCC 3002934 Query 97477 AGCTTATCTAAATAGGACCTAGATCCATTTGCATCCCAAATGTGCACACCAGATGCTGCA 97536 || |||| | | || || ||||| |||||||| || | ||| || | || Sbjct 3002933 AGGCTATCCAGGAAATCCCGGGACCCATTGGCATCCCAGATCTTCACTCCTTTGGATGAC 3002874 Query 97537 AGCTCTTTGCTGTCAGTAGATCCTCTGATAAACCACAACAATTCTTCCACAACAC 97591 ||||| ||| | | | |||| |||||||||||| || ||| |||| ||||| Sbjct 3002873 AGCTCCTTGGCATTTGCATATCCCTTGATAAACCACAGCAGTTCCTCCAGAACAC 3002819 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 346753844421950