Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Octodon_20degus_20[refseq_20GCF_5F000260255.1_202012-05-01] 7,135 sequences; 2,995,889,303 total letters Query= NC_002520.1 Length=232392 Score E Sequences producing significant alignments: (Bits) Value seq203 84.2 3e-11 seq164 84.2 3e-11 seq163 84.2 3e-11 seq146 84.2 3e-11 seq21 84.2 3e-11 >seq203 Length=4329578 Score = 84.2 bits (92), Expect = 3e-11 Identities = 103/138 (75%), Gaps = 2/138 (1%) Strand=Plus/Minus Query 146051 CCACCTCTAAGTCTTAATACCAAATGTAAAGTAGATTC-TTTAGATATATTATAATCTGA 146109 ||||| | ||||| || || | ||| | |||||| || ||| || || || ||||| || Sbjct 2169463 CCACCACGGAGTCTCAACACAAGATGAAGAGTAGACTCCTTTTGA-ATGTTGTAATCAGA 2169405 Query 146110 AAGAGTTCTGCTATCATCTAATTGTTTTCCAGCAAAAATCAATCTTTGCTGATCCGGAGG 146169 | || | | ||| || | || || |||||||| |||| ||||||||||| ||||| Sbjct 2169404 CAAGGTACGTCCATCTTCCAGCTGCTTACCAGCAAAGATCAGCCTTTGCTGATCAGGAGG 2169345 Query 146170 AATTCCTTCTTTATCTTG 146187 ||||||||| ||||| || Sbjct 2169344 AATTCCTTCCTTATCCTG 2169327 >seq164 Length=5921534 Score = 84.2 bits (92), Expect = 3e-11 Identities = 103/138 (75%), Gaps = 2/138 (1%) Strand=Plus/Minus Query 146051 CCACCTCTAAGTCTTAATACCAAATGTAAAGTAGATTC-TTTAGATATATTATAATCTGA 146109 ||||| | ||||| || || | ||| | |||||| || ||| || || || ||||| || Sbjct 5181251 CCACCACGGAGTCTCAACACAAGATGAAGAGTAGACTCCTTTTGA-ATGTTGTAATCAGA 5181193 Query 146110 AAGAGTTCTGCTATCATCTAATTGTTTTCCAGCAAAAATCAATCTTTGCTGATCCGGAGG 146169 | || | | ||| || | || || |||||||| |||| ||||||||||| ||||| Sbjct 5181192 CAAGGTACGTCCATCTTCCAGCTGCTTACCAGCAAAGATCAGCCTTTGCTGATCAGGAGG 5181133 Query 146170 AATTCCTTCTTTATCTTG 146187 ||||||||| ||||| || Sbjct 5181132 AATTCCTTCCTTATCCTG 5181115 >seq163 Length=6182668 Score = 84.2 bits (92), Expect = 3e-11 Identities = 103/138 (75%), Gaps = 2/138 (1%) Strand=Plus/Plus Query 146051 CCACCTCTAAGTCTTAATACCAAATGTAAAGTAGATTC-TTTAGATATATTATAATCTGA 146109 ||||| | ||||| || || | ||| | |||||| || ||| || || || ||||| || Sbjct 5399896 CCACCACGGAGTCTCAACACAAGATGAAGAGTAGACTCCTTTTGA-ATGTTGTAATCAGA 5399954 Query 146110 AAGAGTTCTGCTATCATCTAATTGTTTTCCAGCAAAAATCAATCTTTGCTGATCCGGAGG 146169 | || | | ||| || | || || |||||||| |||| ||||||||||| ||||| Sbjct 5399955 CAAGGTACGTCCATCTTCCAGCTGCTTACCAGCAAAGATCAGCCTTTGCTGATCAGGAGG 5400014 Query 146170 AATTCCTTCTTTATCTTG 146187 ||||||||| ||||| || Sbjct 5400015 AATTCCTTCCTTATCCTG 5400032 >seq146 Length=7541600 Score = 84.2 bits (92), Expect = 3e-11 Identities = 105/139 (76%), Gaps = 4/139 (3%) Strand=Plus/Minus Query 146051 CCACCTCTAAGTCTTAATACCAAATGTAAAGTAGATTC-TTTAGATATATTATAATCTGA 146109 ||||| | ||||| || || | ||| | ||||| || ||| || || || ||||| | Sbjct 3493640 CCACCACGGAGTCTCAACACAAGATGAAGGGTAGACTCCTTTTGA-ATGTTGTAATCAGG 3493582 Query 146110 AAGAGTTCTG-CTATCATCTAATTGTTTTCCAGCAAAAATCAATCTTTGCTGATCCGGAG 146168 | ||||| | | ||| || | ||| || |||||||| |||| ||||||||||| |||| Sbjct 3493581 CA-AGTTCCGTCCATCTTCCAGTTGCTTACCAGCAAAGATCAGCCTTTGCTGATCAGGAG 3493523 Query 146169 GAATTCCTTCTTTATCTTG 146187 |||||||||| ||||| || Sbjct 3493522 GAATTCCTTCCTTATCCTG 3493504 >seq21 Length=22121357 Score = 84.2 bits (92), Expect = 3e-11 Identities = 103/138 (75%), Gaps = 2/138 (1%) Strand=Plus/Minus Query 146051 CCACCTCTAAGTCTTAATACCAAATGTAAAGTAGATTC-TTTAGATATATTATAATCTGA 146109 ||||| | ||||| || | | ||| | |||||| || ||| || || || ||||| || Sbjct 13639777 CCACCACGGAGTCTCAACATAAGATGAAGAGTAGACTCCTTTTGA-ATGTTGTAATCAGA 13639719 Query 146110 AAGAGTTCTGCTATCATCTAATTGTTTTCCAGCAAAAATCAATCTTTGCTGATCCGGAGG 146169 | || | | ||| || | ||| || |||||||| ||||| ||||||||||| ||| | Sbjct 13639718 CAAGGTACGTCCATCTTCCAGTTGCTTACCAGCAAAGATCAACCTTTGCTGATCAGGAAG 13639659 Query 146170 AATTCCTTCTTTATCTTG 146187 ||||||||| ||||| || Sbjct 13639658 AATTCCTTCCTTATCCTG 13639641 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 743460086739200