Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Octodon_20degus_20[refseq_20GCF_5F000260255.1_202012-05-01] 7,135 sequences; 2,995,889,303 total letters Query= NC_002642.1 Length=144575 Score E Sequences producing significant alignments: (Bits) Value seq187 183 3e-41 seq151 102 8e-17 seq148 100 3e-16 >seq187 Length=5094135 Score = 183 bits (202), Expect = 3e-41 Identities = 488/739 (66%), Gaps = 15/739 (2%) Strand=Plus/Plus Query 15929 GACATAACTGACATTTTTTGATATTCACTAACTCTCTTTTCAAAGAAATTTGTTTTTCCT 15988 ||||||||| ||| | ||||| |||| |||| |||| |||||||| ||||| || ||| Sbjct 4826 GACATAACTCCCATAGTCTGATACTCACCAACTATCTTCTCAAAGAAGTTTGTCTTCCCT 4885 Query 15989 TCTAATGAAATATTT-TCCATAAAATCAAAAGGATTTTTTGAACAATAGTAT----TTAT 16043 || || ||||||||| || || || ||||| ||||||| || | | | || Sbjct 4886 TCCAAAGAAATATTTCTCTATGAAGTCAAATGGATTTTC----CACTCGGAAAACCTTGC 4941 Query 16044 CGCATCCCAATTCCAACAATAATCTATCCGCCACAAATTCTATATACTGTTTCATTAAAT 16103 | | || | ||||| || | || || |||||||| | || |||||||||| |||| Sbjct 4942 TGAAGCCTAGTTCCAGCATGAGCCTGTCAGCCACAAACTTGATGCACTGTTTCATCAAAT 5001 Query 16104 CACAGTTCATTCCTATTAATTTAACAGGGATTGCTTCTGTTAAAAAAtttttttCTATAT 16163 ||||||| || || || || || | | || || | || | | || || Sbjct 5002 TGGAGTTCATCCCGATAGGCTTCACCGGCAAGCCCTCCGTGAGGAACTCCTGCTCAATGC 5061 Query 16164 TAACCGCTTCAATGATTATATCTCTTACTACACTATTT-AACGGAGGGTTTAATAAGTGT 16222 | || | |||| || || || || | || | ||||| || | | ||| Sbjct 5062 CGATGGCGTTGATGACAATCTCCCTCACC-CTCTGCTCCAACGGCTTGTGCACCAGGTGC 5120 Query 16223 TTAAACATTATACAAGCAAAATCACAATGCAATCCTTCGTCCCTACTTATTAACTCGTTT 16282 || ||||| | || | || |||||| |||| || |||| || || || | ||||| Sbjct 5121 TTGAACATCAGGCACACGAAGTCACAACGCAAGCCCTCGTATCTGCTAATGAGTTCGTTG 5180 Query 16283 GAAAATGTAAGACCTGGCATTAGTCCTCGTTTTTTAATCCAAAATATAGCGGCAAATGAA 16342 ||||| || || || ||||| || || ||||| || | ||| || || ||||| ||| Sbjct 5181 GAAAAGGTGAGGCCAGGCATGAGGCCCCGTTTCTTGAGCCAGAAGATCAACGCAAAAGAA 5240 Query 16343 CCAGAAAAGAATATACCTTCAACTGCGGCAAATGCAACCAATCGCTCACCGTACGT--TC 16400 ||||||||||| || ||||| || | | |||| || ||| | || || || || | Sbjct 5241 CCAGAAAAGAAAATTCCTTCCACAGTGACAAAGGCCACCGTGTGTTCTCCATATGTGGCC 5300 Query 16401 TAtttttactttctatccattttttagcccaatttgctttttgtttAACACAGTTCATGT 16460 | ||| | | ||||||| ||||| | ||| || | || |||||| || | Sbjct 5301 TCTTTGTCC--CCTATCCAGCGCAACGCCCAGTCTGCCTTCTTCTTCACACAGGCCACGG 5358 Query 16461 TCTCTATTGCATTAAATAAATAAtttttttCTTTGCTATCTAAAATATAAGTATCTATTA 16520 |||| | ||||| || | | | | |||||| | |||| ||| ||||| || || | Sbjct 5359 TCTCAGTGGCATTGAAGAGAAACTCCCTTTCTTGGGAATCTCTAATGTAAGTGTCCATAA 5418 Query 16521 GTAAACTATACATTTCTGAATGAATATTCTCCATTGCTATCTGAAAACCATAAAAGCATC 16580 | | | |||||||| ||||| | || ||||| || ||||| || || || || || | Sbjct 5419 GGAGTGTGTACATTTCCGAATGCAGGTTTTCCATGGCAATCTGGAAGCCGTAGAAACACC 5478 Query 16581 TAGCTTCGGATATTTGTACTTCAGAGTAAAACCTTTCTGCTAAGTTTTCGTTAACTATTC 16640 ||||| | ||||| ||||| || ||| | || | | || || | ||||| | Sbjct 5479 GGGCTTCTGTAATTTGAACTTCTTGGTTAAATCGCTCCACCAGATTCTCACTGACTATGC 5538 Query 16641 CATCGCTAGCTGCaaaaaa 16659 ||||||| || | |||||| Sbjct 5539 CATCGCTGGCAGGAAAAAA 5557 >seq151 Length=7174217 Score = 102 bits (112), Expect = 8e-17 Identities = 97/124 (78%), Gaps = 0/124 (0%) Strand=Plus/Minus Query 16259 TCGTCCCTACTTATTAACTCGTTTGAAAATGTAAGACCTGGCATTAGTCCTCGTTTTTTA 16318 ||||| || || || | ||||| ||||| || || || ||||| ||||||||||| || Sbjct 1182554 TCGTCTCTGCTAATGAGTTCGTTGGAAAAGGTGAGGCCAGGCATGAGTCCTCGTTTCTTG 1182495 Query 16319 ATCCAAAATATAGCGGCAAATGAACCAGAAAAGAATATACCTTCAACTGCGGCAAATGCA 16378 | ||| || || | ||||| |||||||||||||| || ||||| || |||||||| || Sbjct 1182494 AGCCAGAAGATTGACGCAAAAGAACCAGAAAAGAAGATGCCTTCCACAGCGGCAAAGGCC 1182435 Query 16379 ACCA 16382 |||| Sbjct 1182434 ACCA 1182431 >seq148 Length=7051472 Score = 100 bits (110), Expect = 3e-16 Identities = 108/143 (76%), Gaps = 0/143 (0%) Strand=Plus/Minus Query 15886 TTAAAAATCAATATCTAGAGAAAACACATTATCTTTTTTATTTGACATAACTGACATTTT 15945 ||||||||| ||| | || || ||||||||| | | | || |||||||| | Sbjct 5157241 TTAAAAATCTGCATCCAAAGTGAAGACATTATCTGTGGTTTCTGCCATAACTGCAAAACG 5157182 Query 15946 TTGATATTCACTAACTCTCTTTTCAAAGAAATTTGTTTTTCCTTCTAATGAAATATTTTC 16005 || || || ||||| || ||||||||||||||||| |||||||| ||||| || || Sbjct 5157181 CTGGTACTCTGAAACTCGTTTCTCAAAGAAATTTGTTTTCCCTTCTAAAGAAATGTTCTC 5157122 Query 16006 CATAAAATCAAAAGGATTTTTTG 16028 |||||||||||| ||||||| || Sbjct 5157121 CATAAAATCAAAGGGATTTTCTG 5157099 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 462470749711000