Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Octodon_20degus_20[refseq_20GCF_5F000260255.1_202012-05-01] 7,135 sequences; 2,995,889,303 total letters Query= NC_002665.1 Length=108873 Score E Sequences producing significant alignments: (Bits) Value seq26 1141 0.0 seq95 187 2e-42 >seq26 Length=19343008 Score = 1141 bits (1264), Expect = 0.0 Identities = 1040/1307 (80%), Gaps = 6/1307 (0%) Strand=Plus/Minus Query 107333 GAAGAAGCTTTGCCGGGGACATCATCTGTGGGCCCTGGGCTGCTATATGCTGCTGGCCGT 107392 ||||| ||| |||||| | ||| |||||| |||||||||||| || |||||||||| Sbjct 16338418 GAAGAGGCTCTGCCGGCATTACCATGTGTGGGTCCTGGGCTGCTACCTGGTGCTGGCCGT 16338359 Query 107393 TGTTTCTCTGAGACTTTCCCTCAGGTTTAAATGTGATGTAGATTCCTTGGATCTGGAGTC 107452 |||| | |||||||||| ||||| | || ||||| | ||| || || |||| || Sbjct 16338358 TGTTGCCTTGAGACTTTCTCTCAGACTGAAGTGTGACTTTGATCAACTGTATTTGGACTC 16338299 Query 107453 CAGGGACTTCCAGAGTCAGCACTGTAGGGACATGTTGTACAATAGCCTGAAGCTGCCAGC 107512 || ||| || | | || | |||||||| | || |||||| ||||| ||| ||||| Sbjct 16338298 CAAGGAATTTCCCACTCGGTACTGTAGGAATATCCTGTACAGATCCCTGAGGCTTCCAGC 16338239 Query 107513 AAAGAGATCCATCAACTGTTCTGGGATCACGCGAGGGGACCAGGAAGCAGTGGTCCAGGC 107572 |||||| || |||||||||| |||||||| |||||||||||||||||||| ||||||| Sbjct 16338238 AAAGAGGTCTGTCAACTGTTCGGGGATCACCAGAGGGGACCAGGAAGCAGTGATCCAGGC 16338179 Query 107573 CCTCCTAGACAACCTGGAAGTGAAGAAAAAGCGGTCGCCT--CTCACTGGCACCTATTAC 107630 |||| | |||||||| || ||| | |||||| |||| |||| |||| | ||| Sbjct 16338178 TGTCCTGAATAACCTGGAGGTCAAGGAGAAGCGGCAGCCTTTCTCAGAGGCAG--ACTAC 16338121 Query 107631 CTCAACATAACCAGAGACTGTGAGCGCTTCAAGGCCCAAAGGAAGTTCATACAGTTCCCA 107690 ||| ||| ||||||||||||||| ||| |||||||| |||| |||| | ||| | | Sbjct 16338120 GTCACCATGACCAGAGACTGTGAGGCCTTTAAGGCCCAGAGGAGGTTCGTGCAGCTTTCG 16338061 Query 107691 CTGAGTAAAGAAGAGCTAGACTTCCCCATTGCCTACTCGATGGTGGTCCATGAGAAGATT 107750 ||||| ||||| ||| | |||||||| ||||| ||||| |||||||| ||||||||||| Sbjct 16338060 CTGAGCAAAGAGGAGGTGGACTTCCCTATTGCTTACTCCATGGTGGTGCATGAGAAGATC 16338001 Query 107751 GAAAACTTTGAACGGCTGCTGCGAGCCGTGTATGCCCCTCAGAACATATACTGTGTCCAC 107810 || |||||||| |||||||||||||||||||||| || ||||| | ||||| ||||| Sbjct 16338000 GAGAACTTTGAGCGGCTGCTGCGAGCCGTGTATGTGCCCCAGAATGTCTACTGCATCCAC 16337941 Query 107811 GTGGATGTGAAGTCCCCAGAGACTTTCAAAGAGGCGGTCAAGGCCATTATTTCCTGCTTC 107870 ||||| | |||||| ||||| || |||||||||||||||| ||| || |||||||||| Sbjct 16337940 GTGGACGAGAAGTCTCCAGAAACATTCAAAGAGGCGGTCAGGGCGATCGCTTCCTGCTTC 16337881 Query 107871 CCCAATGTCTTCATGGCCAGTAAGTTGGTCCCGGTGGTTTATGCCTCCTGGTCCAGAGTG 107930 | |||||||| ||||||| ||| |||| |||||||||||||| ||||||||||| ||| Sbjct 16337880 CAGAATGTCTTTGTGGCCAGCAAGCTGGTTCCGGTGGTTTATGCTTCCTGGTCCAGGGTG 16337821 Query 107931 CAAGCTGACCTGAACTGTATGGAAGACTTGCTCCAGAGCTCAGTGCCATGGAAGTACTTA 107990 || || ||||||||||| ||||| ||| |||| |||||| ||||||| |||| |||| | Sbjct 16337820 CAGGCCGACCTGAACTGCATGGAGGACCTGCTACAGAGCCCAGTGCCCTGGAGGTACCTG 16337761 Query 107991 CTGAATACATGCGGGACAGACTTCCCCATAAAGACCAATGCCGAGATGGTCCTGGCCCTC 108050 ||||| || |||||||||||||| || | ||||||||||| |||||||||| |||||| Sbjct 16337760 CTGAACACTTGCGGGACAGACTTTCCTCTTAAGACCAATGCAGAGATGGTCCAGGCCCTT 16337701 Query 108051 AAGATGTTGAAGGGTAAGAACAGTATGGAGTCTGAGGTACCTTCTGAGTCCaaaaaaaaT 108110 ||||||||||| || ||||||||||||||||| || |||| ||| | |||||||| Sbjct 16337700 AAGATGTTGAACGGGAAGAACAGTATGGAGTCAGAAATACCCAGTGAATACAAAAAAACC 16337641 Query 108111 CGCTGGAAATACCGCTATGAGGTGACAGACACACTGTACCCTACCAGCAAGATGAAGGAC 108170 |||||||| |||| ||||| ||||| ||||| |||||| |||| || || ||||| Sbjct 16337640 CGCTGGAAGTACCACTATGTGGTGAAGGACACGCTGTACATGACCAACAGGAAGAAGGGT 16337581 Query 108171 CCTCCCCCTGATAATTTACCCATGTTCACAGGGAATGCCTATTTTGTGGCCTCTCGAGCC 108230 ||||||||| ||||| | |||||||||| || || ||||| | ||||| ||||||| | Sbjct 16337580 CCTCCCCCTAATAATGTGACCATGTTCACCGGCAACGCCTACATCGTGGCTTCTCGAGAC 16337521 Query 108231 TTTGTCCAACATGTCTTAGACAACCCTAAATCCCAAAGACTGGTTGAATGGGTCAAAGAC 108290 || || || || ||||| | ||||| ||||||| | ||| | ||||||||||| ||| Sbjct 16337520 TTCGTTCATCACGTCTTGAATAACCCCAAATCCCGACAGCTGATCGAATGGGTCAAGGAC 16337461 Query 108291 ACCTATAGCCCCGACGAACACCTCTGGGCCACCCTTCAGCGTGCTCCGTGGATGCCTGGC 108350 ||||| || || || || ||||||||||| ||| | ||||| || | |||||||||||| Sbjct 16337460 ACCTACAGTCCTGATGAGCACCTCTGGGCTACCTTGCAGCGGGCCTCCTGGATGCCTGGC 16337401 Query 108351 TC-TGTTCCTAGCCACCCCAAGTATCACATCTCAGACATGACTGCCATCGCCAGGCTCGT 108409 || | || ||| |||||||||| |||||||||||||| ||||||||||||| || Sbjct 16337400 TCCTCCCCCCAGC-ACCCCAAGTACGACATCTCAGACATGGTCTCCATCGCCAGGCTGGT 16337342 Query 108410 CAAGTGGCAGTACCACGAGGGAGATGTCAGCATGGGGGCGCCTTATGCACCCTGCTCTGG 108469 ||| |||||| | || ||||| ||||| ||| |||||| ||||| | ||||||||||| Sbjct 16337341 CAAATGGCAGCAGCATGAGGGCGATGTGAGCCAGGGGGCCCCTTACGGGCCCTGCTCTGG 16337282 Query 108470 AATCCATCGGAGGGCCATCTGCATTTACGGGGCCGGGGACCTGTACTGGATTCTCCAGAA 108529 |||| | | |||||||||||||||||||||| ||||||||| ||||||| || ||||| Sbjct 16337281 GGTCCACCAGCGGGCCATCTGCATTTACGGGGCGGGGGACCTGCACTGGATGCTGCAGAA 16337222 Query 108530 CCATCACCTCTTGGCAAACAAGTTTGACCCGAGGGTGGATGATAACGTCCTGCAGTGCTT 108589 ||||||||| |||| |||||||||||||| | |||||| || || || ||||||||| | Sbjct 16337221 CCATCACCTGCTGGCCAACAAGTTTGACCCAAAGGTGGACGACAATGTTCTGCAGTGCCT 16337162 Query 108590 AGAAGAGTACCTACGTCATAAGGCCATCTATGGGACTGAACTTTGAG 108636 ||||||||||| || | |||||| |||| ||| || || |||| Sbjct 16337161 GGAAGAGTACCTCCGGTACAAGGCCGTCTACGGGGTTGGGCTGTGAG 16337115 >seq95 Length=11218802 Score = 187 bits (206), Expect = 2e-42 Identities = 592/900 (66%), Gaps = 57/900 (6%) Strand=Plus/Minus Query 107688 CCACTGAGTAAAGAAGAGCTAGACTTCCCCATTGCCTACTCGATGGTGGTCCATGAGAAG 107747 || || |||||||| ||| || |||||| ||||| || || || ||||| ||| | || Sbjct 6781442 CCCCTTAGTAAAGAGGAGGCAGGCTTCCCGATTGCATATTCCATAGTGGTTCATCACAAA 6781383 Query 107748 ATTGAAAACTTTGAACGGCTGCTGCGAGCCGTGTATGCCCCTCAGAACATATACTGTGTC 107807 ||||||| |||| |||| || | ||| | ||| |||||||| | || || || Sbjct 6781382 ATTGAAATGCTTGACAGGCTTCTAAGGGCCATTTATATGCCTCAGAATTTCTATTGCATC 6781323 Query 107808 CACGTGGATGTGAAGTCCCCAGAG-ACT--TTCAAAGAGGCGGTCAAGGCCATTATTTCC 107864 || ||||| ||||| |||| ||| ||| || || || |||| ||| ||| Sbjct 6781322 CATGTGGACAGAAAGTC---AGAGGACTCCTTCGTAGCCGCAGTGAAGGGCATCGCATCC 6781266 Query 107865 TGCTTCCCCAATGTCTTCATGGCCAGTAAGTTGGTCCCGGTGGTTTATGCCTCCTGGTCC 107924 || ||| |||||||| |||||||| |||||| ||||| ||||| || ||| | Sbjct 6781265 TGTTTCAGGAATGTCTTTGTGGCCAGTCAGTTGGAGAGCGTGGTCTATGCATCATGGAGC 6781206 Query 107925 AGAGTGCAAGCTGACCTGAACTGTATGGAAGACTTGCTCCAGAGCTCAGTGCCA--TGGA 107982 | ||||| |||||||| ||||| ||| | ||| | || |||| | ||||| |||| Sbjct 6781205 CGGGTGCAGGCTGACCTCAACTGCATGAAGGACCT-CTACAGAA-TGAGTGCAGGCTGGA 6781148 Query 107983 AGTACTTACTGAATACATGCGGGACAGACTTCCCCATAAAGACCAATGCCGAGATGGTCC 108042 ||||||| | ||| || |||| || || || || || ||||| || |||||| Sbjct 6781147 AGTACTTGATCAATCTTTGTGGGATGGATTTTCCTATTAAAACCAACCTGGAAATGGTCA 6781088 Query 108043 TGGCCCTCAAGATGTTGAAGGGTAAGAACAGTATGGAGTCTG---AGGTACCTTCTGAGT 108099 | |||||| || | ||| | |||||| | || | | || | || || Sbjct 6781087 GGAAGCTCAAGTCCTTCATGGGAGAAAACAGTCTAGAAACAGAGAAGATGCCATC----- 6781033 Query 108100 CCaaaaa--aaaTCGCTGGAAATACCGCTATG---------------AGGTGACAGACAC 108142 ||| ||| | | | |||||| || |||| ||||||||||||| Sbjct 6781032 CCATAAAGCAGAAAGGTGGAAAAGGCGTTATGTAGTCATCGATGGGAAGGTGACAGACAC 6780973 Query 108143 ACTGTACCCTACCAGCAAGATGAAGGACCCTCCCCCTGATAATTTACCCATGTTCACAGG 108202 | | |||| ||| || | | | || || || | || ||| || ||| |||| Sbjct 6780972 A-GGGACCC--CCA--AA----ACGCAGTCT-CCACTCAAAA--CACCTATTTTCTCAGG 6780925 Query 108203 GAATGCCTATTTTGTGGCCTCTCGAGCCTTTGTCCAACATGTCTTAGACAAC-CCTAAAT 108261 || |||||||||||||| | | | | ||| | || |||| ||| | || Sbjct 6780924 GAGTGCCTATTTTGTGGTCAGCAGGGGGTATGTGGGCTACGTGCTAGAAAACGAAGATAT 6780865 Query 108262 CCCAAAGACTGGTTGAATGGGTCAAAGACACCTATAGCCCCGACGAACACCTCTGGGCCA 108321 || |||| | | || |||| | |||||||| ||||| ||||| |||||||||||| Sbjct 6780864 CCAAAAG-TTCATGGAGTGGGCACAGGACACCTACAGCCCAGACGAGTACCTCTGGGCCA 6780806 Query 108322 CCCTTCAGCGTGCTCCGTG-GATGCCTGGCTCTGTTCC---TAGCCACCCCAAGTATCAC 108377 | | ||| | | ||| || | || || ||| | || ||||| ||||||| || Sbjct 6780805 CAGTACAGAG-GGTCCCTGAGGCCCCAGGTTCTCTGCCCTTGAGCCA---CAAGTATGAC 6780750 Query 108378 ATCTCAGACATGACTGCCATCGCCAGGCTCGTCAAGTGGCAGTACCACGAGGGAGATGTC 108437 | || |||||| || | |||||| | |||||||||||||||| ||| || || || Sbjct 6780749 CTATCTGACATGCAGGCTGTTGCCAGGTTTGTCAAGTGGCAGTACCTCGAAGGGGACGTT 6780690 Query 108438 AGCATGGGGGCGCCTTATGCACCCTGCTCTGGAATCCATCGGAGGGCCATCTGCATTTAC 108497 | ||| || || || | |||||| ||| | |||| | | | | ||||||| Sbjct 6780689 AATGAGGGTGCACCCTACCCCCCCTGCGATGGTACCCATGTGCGCAGCGTGTGCATTTTT 6780630 Query 108498 GGGGCCGGGGACCTGTACTGGATTCTCCAGAACCATCACCTCTTGGCAAACAAGTTTGAC 108557 || || || ||| || |||||| || | || || ||| |||| || || ||||||||| Sbjct 6780629 GGAGCTGGTGACTTGACCTGGATGCTGCGCAAACACCACTTCTTTGCCAATAAGTTTGAC 6780570 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 348238515306990