Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Octodon_20degus_20[refseq_20GCF_5F000260255.1_202012-05-01] 7,135 sequences; 2,995,889,303 total letters Query= NC_002686.2 Length=124784 Score E Sequences producing significant alignments: (Bits) Value seq74 253 2e-62 >seq74 Length=13126430 Score = 253 bits (280), Expect = 2e-62 Identities = 511/758 (67%), Gaps = 0/758 (0%) Strand=Plus/Minus Query 19987 GGAACTGGAACGTTATCTGTATTTGGAATGCAATCTCGATATAACTTGAGAAATGAATTT 20046 || ||||| ||| | || | || || ||||| | || || | | || || |||||||| Sbjct 9228566 GGCACTGGCACGCTGTCGCTGTTCGGCATGCAGGCGCGCTACAGCCTGCGAGATGAATTT 9228507 Query 20047 CCCTTATTAACTACGAAACGGGTATTTTGGAAAGGCGTTGTTGAAGAGTTATTATGGTTT 20106 ||| | | || || || || ||||| ||||| || || | |||||| | | |||||| Sbjct 9228506 CCCCTGCTGACCACCAAGCGTGTATTCTGGAAGGGTATTCTGGAAGAGCTGCTGTGGTTT 9228447 Query 20107 ATTAAAGGATCAACAAATTCTACCGAGCTTGTAGAAAAAGGAGTTAAGATTTGGAGCGCA 20166 || || ||||| |||||| | | ||||| | |||||||| ||||| ||| || Sbjct 9228446 ATCAAGGGATCTACAAATGCCAAGGAGCTGTCATCCAAAGGAGTGAAGATCTGGGATGCC 9228387 Query 20167 CATGGATCTAAGCAATTTTTACACAGCAATGGATTTGACAACCGTCAAGAGGGGGATTTG 20226 |||| || | | || | ||||| || ||| | ||| |||| ||||| || Sbjct 9228386 AATGGGTCCCGGGATTTCCTGGACAGCCTGGGGTTTTCTAGCCGCAAAGAAGGGGACCTG 9228327 Query 20227 GGTCCTGTGTATGGATTTCAATGGAGACATTTTGGAGCTGAATATGTTGACATGAACACA 20286 || || || ||||| || || ||||| ||||| || || || || || | | || || Sbjct 9228326 GGCCCCGTCTATGGCTTCCAGTGGAGGCATTTCGGGGCAGACTACAAAGATACGGACTCA 9228267 Query 20287 AATTATTTTGGACAAGGAGTAGATCAATTACAAAATGTTATTAATTTAATTAAAACGAAC 20346 |||| | || |||||||| || || | || || || || || || ||||| || Sbjct 9228266 GATTACTCGGGTCAAGGAGTTGACCAGCTGCAGAACGTGATCAACACCATCAAAACCGAC 9228207 Query 20347 CCAAACGACAGAAGAATTATTTTATGCGCCTGGAACGCTAAAGATGTGCCTTTAATGGCT 20406 || ||||||||||| || || | || ||||||||| | |||||| | ||| | ||||| Sbjct 9228206 CCTAACGACAGAAGGATCATCATGTGTGCCTGGAACCCAAAAGATCTCCCTCTGATGGCG 9228147 Query 20407 TTGCCTCCATGTCATATGCTATGCCAATTTTACGTTGCTAATAATGAATTGTCGTGTCAA 20466 ||||||| || || | || ||||| || ||||| | || || |||| || || Sbjct 9228146 CTGCCTCCCTGCCACACCCTGTGCCAGTTCTACGTGGTGAACGGGGAGCTGTCCTGCCAG 9228087 Query 20467 ATGTATCAACGATCCGCTGATATGGGACTGGGTGTTCCTTTCAATATTGCAAGTTATGCG 20526 |||| || || || | || ||||| ||||| || || ||||| || || || | ||| Sbjct 9228086 CTGTACCAGCGGTCAGGGGACATGGGCCTGGGCGTACCCTTCAACATCGCCAGCTGCGCG 9228027 Query 20527 CTGCTTACGTATATGATTGCACATGTTACAGATTTAAAAACGGGTGACTTAGTCCACACC 20586 ||||| || || ||| | || || || |||| | || | || ||||| || ||||| Sbjct 9228026 CTGCTCACCTACATGGTCGCGCACGTCACAGGCCTGAAGCCAGGAGACTTCGTGCACACT 9227967 Query 20587 ATAGGAGACGCGCATATTTACCTTAATCATATAGAACCTTTAAAATTACAGTTAACACGA 20646 | |||||||| ||||| ||||| ||||| || | || | || ||| | |||| Sbjct 9227966 TTGGGAGACGCACATATCTACCTGAATCACATCAAGCCGCTGAAGACTCAGCTTCAACGA 9227907 Query 20647 CAACCAAAACAATTCCCAACTCTTCGCATTACTCGAACTGTTAAAGATATTAACGATTTT 20706 |||||| | ||||||| || || ||||| ||| | || | || || Sbjct 9227906 GAACCAAGGCCTTTCCCAAAGCTCAAAATCCTTCGAAAAGTTGAGACAATCGATGACTTC 9227847 Query 20707 AAAGCTGATGATTTTGTGTTAGAAGGTTATAATCCCCA 20744 | |||||| || || | | ||||| || |||||||| Sbjct 9227846 ACAGCTGAAGACTTCCAGCTGGAAGGGTACAATCCCCA 9227809 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 399149287832575