Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Octodon_20degus_20[refseq_20GCF_5F000260255.1_202012-05-01] 7,135 sequences; 2,995,889,303 total letters Query= NC_003027.1 Length=150773 Score E Sequences producing significant alignments: (Bits) Value seq187 140 3e-28 seq6919 87.8 2e-12 seq151 84.2 2e-11 >seq187 Length=5094135 Score = 140 bits (154), Expect = 3e-28 Identities = 557/872 (64%), Gaps = 25/872 (3%) Strand=Plus/Plus Query 13898 GAAATAACGCCCATTTTTTGATATTCACTAACTCTTTTTTCAAAGAAGTTAGTTTTACCT 13957 || ||||| ||||| | ||||| |||| |||| | || ||||||||||| || || ||| Sbjct 4826 GACATAACTCCCATAGTCTGATACTCACCAACTATCTTCTCAAAGAAGTTTGTCTTCCCT 4885 Query 13958 TCCAGTGATATATTT-TCCATAAAATCAAATGGATTTGTTGA--CATAAACACTTTATCA 14014 |||| || |||||| || || || |||||||||||| | | | ||| ||| | | Sbjct 4886 TCCAAAGAAATATTTCTCTATGAAGTCAAATGGATTT-TCCACTCGGAAAACCTTGCTGA 4944 Query 14015 CAACCTAGTTCTAATAGTAATCTATCCGCAATGAACTCAATATATTGAGACATTAAATCA 14074 | |||||||| | | | || || || | |||| || | || ||| |||| Sbjct 4945 -AGCCTAGTTCCAGCATGAGCCTGTCAGCCACAAACTTGATGCACTGTTTCATCAAATTG 5003 Query 14075 CAATTCATACCTATTAGTTTTACAGGAATTATATTGGTTAAAAATTCTTTTTCTATAGAC 14134 | ||||| || || | || || || | | || | || || | || || Sbjct 5004 GAGTTCATCCCGATAGGCTTCACCGGCAAGCCCTCCGTGAGGAACTCCTGCTCAATGCCG 5063 Query 14135 ACAGCCTCGTTTATAATAATCGTAATAATTTCATTAGAAGGAGGATATTTTAGATGTTTA 14194 | || | | | | ||| | | | | | | | || | || || || Sbjct 5064 ATGGCGTTGATGACAATCTCCCTCACCCTCTGCTCCAACGGCTTGTGCACCAGGTGCTTG 5123 Query 14195 AAAATTAAACACGCAAAATCACAATGAAGGCCCTCATCTCTACTAATAAGTTCGTTTGAA 14254 || || | ||| | || |||||| | | |||||| | ||| ||||| |||||||| ||| Sbjct 5124 AACATCAGGCACACGAAGTCACAACGCAAGCCCTCGTATCTGCTAATGAGTTCGTTGGAA 5183 Query 14255 AATGTTAATCCTGGCATCAATCCTCGtttttttAACCAAAATATTGCAGCGAATGATCCG 14314 || || | || ||||| | || ||||| || | ||| || || || || || || Sbjct 5184 AAGGTGAGGCCAGGCATGAGGCCCCGTTTCTTGAGCCAGAAGATCAACGCAAAAGAACCA 5243 Query 14315 GAAAAGAATATTCCCTCAACTGCAGCAAACGCTATTAATCGTTCTCCAAACGATGCTTTT 14374 |||||||| ||||| || || | |||| || | |||||||| | | || | | Sbjct 5244 GAAAAGAAAATTCCTTCCACAGTGACAAAGGCCACCGTGTGTTCTCCATATGTGGCCTCT 5303 Query 14375 TTGTTCGATATCCATTTTCTAGCCCATTCAGAtttttttttAATAAAATCCATTGTTTCA 14434 |||| | |||||| ||||| || | || || || | | | ||| || ||| Sbjct 5304 TTGTCCCCTATCCAGCGCAACGCCCAGTCTGCCTTCTTCTTCACACAGGCCACGGTCTCA 5363 Query 14435 ATAGCATTAAATAAATGTTCCTTCTCTTTAGTACTTGAAATGTATGTATCAATAAGTAAG 14494 | ||||| || | | ||| | |||| | | | |||||| || || ||||| | Sbjct 5364 GTGGCATTGAAGAGAAACTCCCTTTCTTGGGAATCTCTAATGTAAGTGTCCATAAGGAGT 5423 Query 14495 CTATACATTTCAGAGTGTATGTTTTCCATAGCTATCTGAAAACCATAAAAACATCTAGCT 14554 | |||||||| || || | ||||||||| || ||||| || || || ||||| | ||| Sbjct 5424 GTGTACATTTCCGAATGCAGGTTTTCCATGGCAATCTGGAAGCCGTAGAAACACCGGGCT 5483 Query 14555 TCTGACCATTGTACCTCTGAGTAAAATCTTTCGGCCAAATTTTCATTAACTATACCATCA 14614 |||| ||| || ||| || ||||| || ||| ||| ||| | ||||| ||||| Sbjct 5484 TCTGTAATTTGAACTTCTTGGTTAAATCGCTCCACCAGATTCTCACTGACTATGCCATCG 5543 Query 14615 CTAGCTGCAAAAA-----ATGCCAAT-----------ATGTTTTTAATAAAGTATTGCTC 14658 || || | ||||| || ||| |||| | ||||||||| ||| Sbjct 5544 CTGGCAGGAAAAAAAAATATAATAATAAAAAGTTAGAATGTGTGATATAAAGTATCTCTC 5603 Query 14659 TTCATTGCTGAGTTTTTTCCAATCGGCTAAA--TCCTTAGAAAGATCTACTTCATCAACT 14716 |||| | || || ||| | ||| || || || |||||||| ||||| || || Sbjct 5604 TTCAGCCTTCAGGGCTTCCCAGT--GCTGAATGTCTTTGGAAAGATCGACTTCCTCCGCT 5661 Query 14717 GTCCAAAAACTAGCAACAGCTTTTTTATACAT 14748 ||||||||| ||| | ||||| ||| |||| Sbjct 5662 GTCCAAAAAGAAGCCTCGGCTTTCTTACACAT 5693 >seq6919 Length=1122 Score = 87.8 bits (96), Expect = 2e-12 Identities = 77/96 (80%), Gaps = 0/96 (0%) Strand=Plus/Minus Query 13898 GAAATAACGCCCATTTTTTGATATTCACTAACTCTTTTTTCAAAGAAGTTAGTTTTACCT 13957 || ||||| ||||| | ||||| || | ||||| || ||||||||||| || || ||| Sbjct 581 GACATAACTCCCATCCTCTGATACTCGCCCACTCTCTTCTCAAAGAAGTTTGTCTTCCCT 522 Query 13958 TCCAGTGATATATTTTCCATAAAATCAAATGGATTT 13993 ||||| || ||||| ||||| || |||||||||||| Sbjct 521 TCCAGAGAAATATTCTCCATGAAGTCAAATGGATTT 486 >seq151 Length=7174217 Score = 84.2 bits (92), Expect = 2e-11 Identities = 70/86 (81%), Gaps = 0/86 (0%) Strand=Plus/Minus Query 14473 AATGTATGTATCAATAAGTAAGCTATACATTTCAGAGTGTATGTTTTCCATAGCTATCTG 14532 |||||| || |||||||| | || |||||||| || ||||||||||||||||| ||||| Sbjct 1180946 AATGTAAGTGTCAATAAGCAGACTGTACATTTCCGAATGTATGTTTTCCATAGCAATCTG 1180887 Query 14533 AAAACCATAAAAACATCTAGCTTCTG 14558 || || || ||||| | ||||||| Sbjct 1180886 GAAGCCGTAGAAACAACGGGCTTCTG 1180861 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 482302580801800