Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Octodon_20degus_20[refseq_20GCF_5F000260255.1_202012-05-01] 7,135 sequences; 2,995,889,303 total letters Query= NC_003094.2 Length=130759 Score E Sequences producing significant alignments: (Bits) Value seq57 91.5 1e-13 seq269 87.8 2e-12 seq77 87.8 2e-12 seq39 87.8 2e-12 seq51 84.2 2e-11 seq27 84.2 2e-11 seq70 82.4 6e-11 >seq57 Length=13618965 Score = 91.5 bits (100), Expect = 1e-13 Identities = 157/228 (69%), Gaps = 0/228 (0%) Strand=Plus/Minus Query 24831 CATGCAGATATTTGTTAAAACCTTAACCGGCAAAACGATAACCGTCGATGTCGAATCGAG 24890 ||||||||| ||||| || ||| | || ||||| || || ||| |||| || || | || Sbjct 4325052 CATGCAGATCTTTGTGAAGACCCTGACGGGCAAGACCATCACCCTCGAGGTTGAGCCCAG 4324993 Query 24891 CGACAGTGTAGAAACTGTTAAGGAAAAAATTGCTGCAAAAGAAGGCGTACCGGTTGACCA 24950 |||| | || | ||| || | ||||| | || || ||| | || |||||| Sbjct 4324992 TGACACCATCGAGAATGTCAAAGCCAAAATCCAAGACAAGGAGGGCATCCCCCCTGACCA 4324933 Query 24951 GCAACGTTTAATATATGCGGGCAAACAACTGGAAGATTCCATGACTATGAACGATTACAG 25010 ||| ||| | |||| ||| |||||||||||||| ||| ||| | || |||| Sbjct 4324932 GCAGCGTCTGATATTTGCCGGCAAACAACTGGAGGATGGGCGGACCCTCTCTGACTACAA 4324873 Query 25011 CATACAGAAAGAGGCCACGCTTCATTTAGTGTTACGATTGCGCGGAGG 25058 ||| ||||||||| |||| || || | ||| | || |||| || || Sbjct 4324872 CATCCAGAAAGAGTCCACCCTGCACCTGGTGCTTCGCCTGCGAGGTGG 4324825 >seq269 Length=2777306 Score = 87.8 bits (96), Expect = 2e-12 Identities = 156/228 (68%), Gaps = 0/228 (0%) Strand=Plus/Minus Query 24831 CATGCAGATATTTGTTAAAACCTTAACCGGCAAAACGATAACCGTCGATGTCGAATCGAG 24890 ||||||||| ||||| || ||| | || ||||| || || ||| |||| || || | || Sbjct 127641 CATGCAGATCTTTGTGAAGACCCTGACGGGCAAGACCATCACCCTCGAGGTTGAGCCCAG 127582 Query 24891 CGACAGTGTAGAAACTGTTAAGGAAAAAATTGCTGCAAAAGAAGGCGTACCGGTTGACCA 24950 |||| | || | ||| || | ||||| | || || ||| | || |||||| Sbjct 127581 TGACACCATCGAGAATGTCAAAGCCAAAATCCAAGACAAGGAGGGCATCCCCCCTGACCA 127522 Query 24951 GCAACGTTTAATATATGCGGGCAAACAACTGGAAGATTCCATGACTATGAACGATTACAG 25010 ||| ||| | |||| ||| |||||||||||||| ||| ||| | || |||| Sbjct 127521 GCAGCGTCTGATATTTGCTGGCAAACAACTGGAGGATGGGCGGACCCTCTCTGACTACAA 127462 Query 25011 CATACAGAAAGAGGCCACGCTTCATTTAGTGTTACGATTGCGCGGAGG 25058 ||| || |||||| |||| || || | ||| | || |||| || || Sbjct 127461 CATCCAAAAAGAGTCCACCCTGCACCTGGTGCTTCGCCTGCGAGGTGG 127414 >seq77 Length=11908039 Score = 87.8 bits (96), Expect = 2e-12 Identities = 156/228 (68%), Gaps = 0/228 (0%) Strand=Plus/Plus Query 24831 CATGCAGATATTTGTTAAAACCTTAACCGGCAAAACGATAACCGTCGATGTCGAATCGAG 24890 ||||||||| ||||| || ||| | || ||||| || || ||| |||| || || | || Sbjct 9796915 CATGCAGATCTTTGTGAAGACCCTGACGGGCAAGACCATCACCCTCGAGGTTGAGCCCAG 9796974 Query 24891 CGACAGTGTAGAAACTGTTAAGGAAAAAATTGCTGCAAAAGAAGGCGTACCGGTTGACCA 24950 |||| | || | ||| || | ||||| | || || ||| | || |||||| Sbjct 9796975 TGACACCATCGAGAATGTCAAAGCCAAAATCCAAGACAAGGAGGGCATCCCCCCTGACCA 9797034 Query 24951 GCAACGTTTAATATATGCGGGCAAACAACTGGAAGATTCCATGACTATGAACGATTACAG 25010 ||| ||| | |||| ||| |||||||||||||| ||| ||| | || |||| Sbjct 9797035 GCAGCGTCTGATATTTGCCGGCAAACAACTGGAGGATGGGCGGACCCTCTCTGACTACAA 9797094 Query 25011 CATACAGAAAGAGGCCACGCTTCATTTAGTGTTACGATTGCGCGGAGG 25058 ||| || |||||| |||| || || | ||| | || |||| || || Sbjct 9797095 CATCCAAAAAGAGTCCACCCTGCACCTGGTGCTTCGCCTGCGAGGTGG 9797142 >seq39 Length=16355505 Score = 87.8 bits (96), Expect = 2e-12 Identities = 156/228 (68%), Gaps = 0/228 (0%) Strand=Plus/Plus Query 24831 CATGCAGATATTTGTTAAAACCTTAACCGGCAAAACGATAACCGTCGATGTCGAATCGAG 24890 ||||||||| ||||| || ||| | || ||||| || || ||| |||| || || | || Sbjct 140640 CATGCAGATCTTTGTGAAGACCCTGACGGGCAAGACCATCACCCTCGAGGTTGAGCCCAG 140699 Query 24891 CGACAGTGTAGAAACTGTTAAGGAAAAAATTGCTGCAAAAGAAGGCGTACCGGTTGACCA 24950 |||| | || | ||| || | ||||| | || || ||| | || |||||| Sbjct 140700 TGACACCATCGAGAATGTCAAAGCCAAAATCCAAGACAAGGAGGGCATCCCCCCTGACCA 140759 Query 24951 GCAACGTTTAATATATGCGGGCAAACAACTGGAAGATTCCATGACTATGAACGATTACAG 25010 ||| ||| | |||| ||| |||||||||||||| ||| ||| | || |||| Sbjct 140760 GCAGCGTCTGATATTTGCCGGCAAACAACTGGAGGATGGGCGGACCCTCTCTGACTACAA 140819 Query 25011 CATACAGAAAGAGGCCACGCTTCATTTAGTGTTACGATTGCGCGGAGG 25058 ||| || |||||| |||| || || | ||| | || |||| || || Sbjct 140820 CATCCAAAAAGAGTCCACCCTGCACCTGGTGCTTCGCCTGCGAGGTGG 140867 >seq51 Length=14832274 Score = 84.2 bits (92), Expect = 2e-11 Identities = 158/232 (68%), Gaps = 8/232 (3%) Strand=Plus/Minus Query 24831 CATGCAGATATTTGTTAAAACCTTAACCGGCAAAACGATAACCGTCGATGTCGAATCGAG 24890 ||||||||| ||||| || ||| | || ||||| || || ||| |||| || || | || Sbjct 4138982 CATGCAGATCTTTGTGAAGACCCTGACGGGCAAGACCATCACCCTCGAGGTTGAGCCCAG 4138923 Query 24891 CGACAGTGTAGAAACTGTTAAGGAAAAAATTGCTGCAAAAGAAGGCG----TACCGGTTG 24946 |||| | || | ||| || | ||||| ||||| |||| | | || || Sbjct 4138922 TGACACCATCGAGAATGTCAAAGCCAAAATC----CAAAACAAGGAGGGCATCCCCCCTG 4138867 Query 24947 ACCAGCAACGTTTAATATATGCGGGCAAACAACTGGAAGATTCCATGACTATGAACGATT 25006 ||||||||||| | |||| ||| |||||||||||||| || ||| | || | Sbjct 4138866 ACCAGCAACGTCTGATATTTGCCGGCAAACAACTGGAGTATGGGCGGACCCTCTCTGACT 4138807 Query 25007 ACAGCATACAGAAAGAGGCCACGCTTCATTTAGTGTTACGATTGCGCGGAGG 25058 ||| ||| || |||||| |||| || || | ||| | || |||| || || Sbjct 4138806 ACAACATCCAAAAAGAGTCCACTCTGCACCTGGTGCTTCGCCTGCGAGGTGG 4138755 >seq27 Length=19580306 Score = 84.2 bits (92), Expect = 2e-11 Identities = 139/201 (69%), Gaps = 0/201 (0%) Strand=Plus/Minus Query 24831 CATGCAGATATTTGTTAAAACCTTAACCGGCAAAACGATAACCGTCGATGTCGAATCGAG 24890 ||||||||| ||||| || ||| | || ||||| || || ||| |||| || || | || Sbjct 1542738 CATGCAGATCTTTGTGAAGACCCTGACGGGCAAGACCATCACCCTCGAGGTTGAGCCCAG 1542679 Query 24891 CGACAGTGTAGAAACTGTTAAGGAAAAAATTGCTGCAAAAGAAGGCGTACCGGTTGACCA 24950 |||| | || | ||| || | ||||| | || || ||| | || |||||| Sbjct 1542678 TGACACCATCGAGAATGTCAAAGCCAAAATCCAAGACAAGGAGGGCATCCCCCCTGACCA 1542619 Query 24951 GCAACGTTTAATATATGCGGGCAAACAACTGGAAGATTCCATGACTATGAACGATTACAG 25010 ||| ||| | |||| ||| |||||||||||||| ||| ||| | || |||| Sbjct 1542618 GCAGCGTCTGATATTTGCCGGCAAACAACTGGAGGATGGGCGGACCCTCTCTGACTACAA 1542559 Query 25011 CATACAGAAAGAGGCCACGCT 25031 ||| || |||||| |||| || Sbjct 1542558 CATCCAAAAAGAGTCCACCCT 1542538 >seq70 Length=12294693 Score = 82.4 bits (90), Expect = 6e-11 Identities = 157/229 (69%), Gaps = 2/229 (1%) Strand=Plus/Minus Query 24832 ATGCAGATATTTGTTAAAACCTTAACCGGCAAAACGATAACCGTCGATGTCGAATCGAGC 24891 |||||||| || || |||||| | || || || || || || |||| || || | | Sbjct 8652925 ATGCAGATTTTCGTGAAAACCCTCACAGGAAAGACCATCACGCTCGAGGTTGAGCCCTGG 8652866 Query 24892 GACAGTGTAGAAACTGTTAAGGAAAAAATTGCTGCAAAAGAA-GGCGTACCGGTTGACCA 24950 |||| | |||||| ||| |||| || || | | | ||||| || | || ||| || Sbjct 8652865 GACACTATAGAAAATGTAAAGGCCAAGATC-CAGGATAAGAAAGGAATTCCTCCTGATCA 8652807 Query 24951 GCAACGTTTAATATATGCGGGCAAACAACTGGAAGATTCCATGACTATGAACGATTACAG 25010 |||| | | || | ||| || || |||||||||||| ||| || ||||||| Sbjct 8652806 GCAAAGGCTGATCTTTGCTGGTAAGCAACTGGAAGATGGACGGACCTTGCCTGATTACAA 8652747 Query 25011 CATACAGAAAGAGGCCACGCTTCATTTAGTGTTACGATTGCGCGGAGGT 25059 ||| || || ||| | || |||||| | ||||| || | ||||| ||| Sbjct 8652746 CATTCAAAAGGAGTCTACCCTTCATCTTGTGTTGAGACTCCGCGGTGGT 8652698 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 418267625199200