Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Octodon_20degus_20[refseq_20GCF_5F000260255.1_202012-05-01] 7,135 sequences; 2,995,889,303 total letters Query= NC_003225.3 Length=309286 Score E Sequences producing significant alignments: (Bits) Value seq288 89.7 1e-12 >seq288 Length=2168581 Score = 89.7 bits (98), Expect = 1e-12 Identities = 172/254 (68%), Gaps = 0/254 (0%) Strand=Plus/Plus Query 94791 TCCTCCAGCAGTCTTGGAGATGATTGCCGCCTCCTTAAGAGTATCATAAATACCCTCAAT 94850 ||||||||| | || || || | ||| || ||| ||||| |||||||| || || | Sbjct 511250 TCCTCCAGCGGATTTAGAAATCAATGCACACTGCTTCAGAGTGTCATAAATGCCTTCGGT 511309 Query 94851 GCTATCATCTTGAAGGCCCAGAAGGAAGCACGAGGAAAGTTGGGGTGTGACTGTTCCACA 94910 ||| ||||||| | | ||||||||| || |||||||| || | || | | Sbjct 511310 GCTGTCATCTTTCATACTCAGAAGGAAACAGCTTGAAAGTTGTGGGCAGTTGGTACTAGC 511369 Query 94911 ATTAAACAGTGTGGGGGAAGCATGGGTAAAATAGTGCCTCGACATGAGATCATATGTTTC 94970 ||| || || | ||| |||||||| ||||| | | | || | || | |||||||| Sbjct 511370 ATTGAAGAGAGAGGGAGAAGCATGAGTAAACCACTTCTGGGAAAGAAGGTTGTATGTTTC 511429 Query 94971 AATGACAGATTTGATGTCTGATCCGTGAATGCCGACAGCCACACGCATAATCATGTCCTG 95030 ||| ||| | |||||| | |||||| || |||| ||| | ||| | ||| | ||| Sbjct 511430 AATTGCAGCCTCTATGTCTTCTTTGTGAATCCCCACAGACACCCTCATCAACATATGCTG 511489 Query 95031 AGGGCGCTCAACCA 95044 || | ||| ||| Sbjct 511490 CGGCCTTTCAGCCA 511503 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 989493535013925