Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Octodon_20degus_20[refseq_20GCF_5F000260255.1_202012-05-01]
7,135 sequences; 2,995,889,303 total letters
Query= NC_003225.3
Length=309286
Score E
Sequences producing significant alignments: (Bits) Value
seq288 89.7 1e-12
>seq288
Length=2168581
Score = 89.7 bits (98), Expect = 1e-12
Identities = 172/254 (68%), Gaps = 0/254 (0%)
Strand=Plus/Plus
Query 94791 TCCTCCAGCAGTCTTGGAGATGATTGCCGCCTCCTTAAGAGTATCATAAATACCCTCAAT 94850
||||||||| | || || || | ||| || ||| ||||| |||||||| || || |
Sbjct 511250 TCCTCCAGCGGATTTAGAAATCAATGCACACTGCTTCAGAGTGTCATAAATGCCTTCGGT 511309
Query 94851 GCTATCATCTTGAAGGCCCAGAAGGAAGCACGAGGAAAGTTGGGGTGTGACTGTTCCACA 94910
||| ||||||| | | ||||||||| || |||||||| || | || | |
Sbjct 511310 GCTGTCATCTTTCATACTCAGAAGGAAACAGCTTGAAAGTTGTGGGCAGTTGGTACTAGC 511369
Query 94911 ATTAAACAGTGTGGGGGAAGCATGGGTAAAATAGTGCCTCGACATGAGATCATATGTTTC 94970
||| || || | ||| |||||||| ||||| | | | || | || | ||||||||
Sbjct 511370 ATTGAAGAGAGAGGGAGAAGCATGAGTAAACCACTTCTGGGAAAGAAGGTTGTATGTTTC 511429
Query 94971 AATGACAGATTTGATGTCTGATCCGTGAATGCCGACAGCCACACGCATAATCATGTCCTG 95030
||| ||| | |||||| | |||||| || |||| ||| | ||| | ||| | |||
Sbjct 511430 AATTGCAGCCTCTATGTCTTCTTTGTGAATCCCCACAGACACCCTCATCAACATATGCTG 511489
Query 95031 AGGGCGCTCAACCA 95044
|| | ||| |||
Sbjct 511490 CGGCCTTTCAGCCA 511503
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 989493535013925
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |