Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Octodon_20degus_20[refseq_20GCF_5F000260255.1_202012-05-01] 7,135 sequences; 2,995,889,303 total letters Query= NC_003389.1 Length=146454 Score E Sequences producing significant alignments: (Bits) Value seq288 194 2e-44 seq187 125 7e-24 seq151 107 2e-18 seq146 105 6e-18 seq64 91.5 1e-13 >seq288 Length=2168581 Score = 194 bits (214), Expect = 2e-44 Identities = 808/1261 (64%), Gaps = 22/1261 (2%) Strand=Plus/Plus Query 37300 TTCCAATCCCATAAATCTGTTGGGTT--CTTTAACCACATATCATATTGTAGAATACCTT 37357 ||||| ||||| | ||||| || | | || |||||| ||||| || || || |||| Sbjct 510249 TTCCAGTCCCACAGGTCTGTGGGAATAACATT--CCACATGTCATACTGAAGGATTCCTT 510306 Query 37358 TACTCGCTGGAGAATCGTTATATGTCTCATAAGGTCCGTAAATT--TTAGCTAGTTCGCA 37415 | || ||||| | | | ||| | ||||| || || || | || ||||| || || Sbjct 510307 TGCTTACTGGACAGCCTTCATAGATTTCATATGGGCC--AAGCTCCTTGGCTAGCTCACA 510364 Query 37416 ACTAGATTCTAGTGCGGCATAATATATTGTTTCGAAAATTTGTATATTTAATATTTTTGC 37475 || | ||| || || ||||||| || ||||| | |||| | ||||||||| | || Sbjct 510365 GCTGGCTTCCAGGGCTCCATAATAAATAGTTTCAAGGATTTATTTATTTAATAACTGGGC 510424 Query 37476 TTCTTCGCTATCGAATGCATAGCCCAATAATATAAACACATCAGCCAAACCCTGAACACC 37535 ||| || || || | ||| | || | ||||| ||| ||| || || || || Sbjct 510425 CTCTATACTCTCAAAAGGATATCTCATCAGGATAAAGGTATCTACCAGCCCTTGTACTCC 510484 Query 37536 GATACCTATGGGTCTATGTTTCTTATTAGATCTAGACGATTCTATCACTGGATAATAATT 37595 || || ||||||||||| ||||| ||| | | ||| || || ||| || Sbjct 510485 AATTCCAATGGGTCTATGGCATTTATTTGATAAATGTGCCTCTGGGACAGG---ATAGTT 510541 Query 37596 GATATCTATTATTTTATTTAGATTTTTAACTAGTATTTTCGTAATTATTCTCAACTTGTC 37655 ||||| || |||||||| | |||| || | ||| || | | | ||| || || Sbjct 510542 TATATCGATAATTTTATTCAAATTTCGGACAATAGCTTTGGTGACTTCTGCCAATTTCTC 510601 Query 37656 GAA--CATAAATACGTTATTAT-TAACAAATTTACTCAACGAAATAGATCCTAGATTACA 37712 || | || | ||| | | ||||| | || ||| | | || | | ||||| Sbjct 510602 AAAGTCGTATGTGTGTTCTGGTGTAACATACATATTCAGGGCCAGGGAAGCCAAGTTACA 510661 Query 37713 TACAGCAACTTCATCTTCGTTACTAAATTGTATAATCTCTGTACAGAGATTACTCGATCT 37772 || ||||| |||| || | | || ||| | || ||||| || || || || || | Sbjct 510662 AACTGCAACCTCATTTTTGCTGGTATATTCAACTATTTCTGTGCACAGGTTGCTGCATTT 510721 Query 37773 AATTGTTCCCAAATTGCTTTGATTGGATTTTTTATTACAAGAATCTTTATATAGTATATA 37832 |||||||||| || || ||| || |||||| |||||||| || || || || Sbjct 510722 GATTGTTCCCAGGTTCTGCTGGTTGCTCTTCCGATTACAGGAATCTTTGTAGAGCATGTA 510781 Query 37833 CGGCGTTCCTTGTTCTATTTGAGCCTCGATAATAGATTTCCATAAACTTCT-TGCTTTAA 37891 | | || || | ||| | |||| ||| | || | | ||| || || || ||||| | Sbjct 510782 CAGGGTACCCGGCTCTGTCTGAGACTCAGTGATGGTGTACCA-AAGCTGCTGAGCTTTTA 510840 Query 37892 CGA--TCGCTTTAAtttttttCTTTGTTTCGTATTCTATATATAATTTGTTAAAATCATT 37949 | | | || || || || |||| || | |||||| || | ||| || | Sbjct 510841 CAACTTTGCGAACATGACCTTGTT--TTTCATAACTTTCATATAACTTCTCAAATTCCTC 510898 Query 37950 CCCCCATACATCGCATAATCCTGGACATTCGCATGGACACATTAGAGACCATTCTTCATC 38009 ||||| || || | || ||||| || |||||||| | |||||| || | || Sbjct 510899 TCCCCAAACCTCATCCAGGCCAGGACACTCATTTGGACACAGCAAAGACCAGTCCTGATT 510958 Query 38010 TTTTTCTACGCGTTCCATAAATAAATCAGGTACCCATAATGCAGTAAATAAATCTTTGGT 38069 | ||||| |||| ||| || | || | | ||| | ||| || | || ||| Sbjct 510959 AGTCTCTACTCGTTTCATGAAGAGATTCAGAATCCAAAGGGCAAAGAAAAGATTCCTGGC 511018 Query 38070 TCTATATTCTTCGTTCCCTACATTCTTTCTTAAGCTTAGAAAATCGAATATATCAGCGTG 38129 | | ||||| || ||| |||||| |||| ||||| || || || || || Sbjct 511019 ACGCTGCTCTTCTTTTCCTGTGTTCTTTTTTAAATCAAGAAACTCAAAGATGTCTAAATG 511078 Query 38130 CCATGGTTCTATATAAATCGACATTGCTCCTGGTCTTTTATCACCTCCCTGATTAATATA 38189 ||| || || | ||||| | | ||| || || | || | || || |||| || ||| Sbjct 511079 CCAAGGCTCCAGGTAAATAGCAAATGCCCCAGGGCACTTGTTTCCACCTTGATCAACATA 511138 Query 38190 TCTAACTGTGTTATTATATATTCTTAACATAGGTACTATACCATTAGATTTGCCGTTTAT 38249 | | ||||||| ||||| | ||| | ||| ||||| | |||||||| ||||| || | Sbjct 511139 ACGAGCTGTGTTGTTATACACTCTCAGCATTGGTACAAGGCCATTAGAATTGCCATTGGT 511198 Query 38250 ACCGGATATATAAGTACCCTTAGCTCGTATATTACTTATCGACAATCCTATTCCACCTGC 38309 || | ||| || | || |||| | ||| ||| | | | || ||||| || || Sbjct 511199 CCCAGCTATGTAGCTGCCAGTAGCCCAAATACAACTCACAGTGACACCAATTCCTCCAGC 511258 Query 38310 ATGTTTTGATATTAAAGCGCATTGTTTTAACGTATCAAATATACCTTCTATACTGTCATC 38369 ||| || || || || || || || | || ||| | || ||||| | |||||||| Sbjct 511259 GGATTTAGAAATCAATGCACACTGCTTCAGAGTGTCATAAATGCCTTCGGTGCTGTCATC 511318 Query 38370 CTTTATTGGTAGTATAAAACAACTAGACATTTG-AGGCAATGGAGTTCCGGCGTTAAATA 38428 || || || | ||||| || || | ||| |||| | | || | || || || | Sbjct 511319 TTTCATACTCAGAAGGAAACAGCTTGAAAGTTGTGGGCAGTTG-GTACTAGCATTGAAGA 511377 Query 38429 ATGTAGGAGATGCATGTATGAACCATTTTTCCGACAAATAATTATATGTTTCTATTACAT 38488 | ||||| ||||| | ||||| || | || | | || |||||||| ||| || Sbjct 511378 GAGAGGGAGAAGCATGAGTAAACCACTTCTGGGAAAGAAGGTTGTATGTTTCAATTGCAG 511437 Query 38489 CATCTATATCACCGCCGTGAATACCTAGAGATACCCTCATTAGCATATGTTGTGGTCTTT 38548 | ||||| || | |||||| || | ||| |||||||| | |||||| || || |||| Sbjct 511438 CCTCTATGTCTTCTTTGTGAATCCCCACAGACACCCTCATCAACATATGCTGCGGCCTTT 511497 Query 38549 C 38549 | Sbjct 511498 C 511498 >seq187 Length=5094135 Score = 125 bits (138), Expect = 7e-24 Identities = 292/440 (66%), Gaps = 3/440 (1%) Strand=Plus/Plus Query 11615 TGTTTAAACATTAAACACGCAAAATCACAATGTAAACCTTCGTCTCTACTTATTAGTTCA 11674 || || ||||| | ||| | || |||||| | || || |||| ||| || || ||||| Sbjct 5118 TGCTTGAACATCAGGCACACGAAGTCACAACGCAAGCCCTCGTATCTGCTAATGAGTTCG 5177 Query 11675 TTAGAAAATGTTAATCCGGGCATCAATCCTCGtttttttATCCAAAATATAGCAGCAAAT 11734 || ||||| || | || ||||| | || ||||| || | ||| || || ||||| Sbjct 5178 TTGGAAAAGGTGAGGCCAGGCATGAGGCCCCGTTTCTTGAGCCAGAAGATCAACGCAAAA 5237 Query 11735 GAACCAGAAAAGAATATTCCCTCCACAGCTGCAAATGCTACTACTCTTTCTCCATAT--- 11791 |||||||||||||| ||||| ||||||| |||| || || |||||||||| Sbjct 5238 GAACCAGAAAAGAAAATTCCTTCCACAGTGACAAAGGCCACCGTGTGTTCTCCATATGTG 5297 Query 11792 ACCTTGTTGCTAGATATCCATTTTCTGGCCCAATCAGCTTTCTTTTTTACGCATTCCATT 11851 ||| ||| |||||| ||||| || || ||||| || || || ||| Sbjct 5298 GCCTCTTTGTCCCCTATCCAGCGCAACGCCCAGTCTGCCTTCTTCTTCACACAGGCCACG 5357 Query 11852 GTTTCTATAGCGTTAAATAAATGCATTTTTTCTATATTATCTCTTACATATGTATCTATT 11911 || || | || || || | | | ||||| |||||| | || || || || Sbjct 5358 GTCTCAGTGGCATTGAAGAGAAACTCCCTTTCTTGGGAATCTCTAATGTAAGTGTCCATA 5417 Query 11912 AATAAACTATACATTTCTGAATGAATATTTTCCATAGCTATTTGAAATCCATAGAAACAT 11971 | | | |||||||| ||||| | |||||||| || || || || || |||||||| Sbjct 5418 AGGAGTGTGTACATTTCCGAATGCAGGTTTTCCATGGCAATCTGGAAGCCGTAGAAACAC 5477 Query 11972 CGTGCCTCTGAACACTGTACATCCACATAAAATCTTTCCGCTAAATTCTCATTTACAATA 12031 || || |||| | || || || | ||||| ||| | | ||||||| | || || Sbjct 5478 CGGGCTTCTGTAATTTGAACTTCTTGGTTAAATCGCTCCACCAGATTCTCACTGACTATG 5537 Query 12032 CCATCACTAGATGCAAAAAA 12051 ||||| || | | |||||| Sbjct 5538 CCATCGCTGGCAGGAAAAAA 5557 >seq151 Length=7174217 Score = 107 bits (118), Expect = 2e-18 Identities = 104/134 (78%), Gaps = 0/134 (0%) Strand=Plus/Minus Query 11654 TCGTCTCTACTTATTAGTTCATTAGAAAATGTTAATCCGGGCATCAATCCTCGttttttt 11713 |||||||| || || ||||| || ||||| || | || ||||| | ||||||||| || Sbjct 1182554 TCGTCTCTGCTAATGAGTTCGTTGGAAAAGGTGAGGCCAGGCATGAGTCCTCGTTTCTTG 1182495 Query 11714 ATCCAAAATATAGCAGCAAATGAACCAGAAAAGAATATTCCCTCCACAGCTGCAAATGCT 11773 | ||| || || | ||||| |||||||||||||| || || |||||||| ||||| || Sbjct 1182494 AGCCAGAAGATTGACGCAAAAGAACCAGAAAAGAAGATGCCTTCCACAGCGGCAAAGGCC 1182435 Query 11774 ACTACTCTTTCTCC 11787 || || | |||||| Sbjct 1182434 ACCACGCGTTCTCC 1182421 >seq146 Length=7541600 Score = 105 bits (116), Expect = 6e-18 Identities = 100/128 (78%), Gaps = 0/128 (0%) Strand=Plus/Minus Query 37138 ACCTGAAAATCTCCAGATAATACTCTTCTTGTATATATATTGCTAGTATATGGTTCAATG 37197 |||||||| ||||| || || ||||||| || || || ||||| ||||| |||||||| Sbjct 3726378 ACCTGAAATTCTCCTGACAAGACTCTTCGAGTGTAGATGTTGCTGGTATAAGGTTCAATA 3726319 Query 37198 GACTCATTATTACTTAATATTTGAGATGTAGATGCAGTAGGCATTGGTGCTATTAGAAGG 37257 ||||| ||||| | || || |||| || || |||||||||||||| || || || || Sbjct 3726318 GACTCGTTATTTCCCAAGATCTGAGCAGTTGAAGCAGTAGGCATTGGGGCAATAAGTAGA 3726259 Query 37258 CTATTTCT 37265 || ||||| Sbjct 3726258 CTGTTTCT 3726251 Score = 82.4 bits (90), Expect = 7e-11 Identities = 146/213 (69%), Gaps = 0/213 (0%) Strand=Plus/Minus Query 37354 CCTTTACTCGCTGGAGAATCGTTATATGTCTCATAAGGTCCGTAAATTTTAGCTAGTTCG 37413 ||||| || ||||| | | | ||| || ||||| || || | || ||||| || Sbjct 3721981 CCTTTGCTTACTGGACAGCCTTCATAGGTTTCATATGGGCCATGCTCCTTGGCTAGCTCA 3721922 Query 37414 CAACTAGATTCTAGTGCGGCATAATATATTGTTTCGAAAATTTGTATATTTAATATTTTT 37473 || || | ||| || || ||||||| || ||||| || |||||| ||||||||| | Sbjct 3721921 CAGCTGGCTTCCAGGGCTCCATAATAAATAGTTTCAAAGATTTGTTTATTTAATAACTGG 3721862 Query 37474 GCTTCTTCGCTATCGAATGCATAGCCCAATAATATAAACACATCAGCCAAACCCTGAACA 37533 || ||| || || || | ||| | || | ||||| |||| |||| || || || Sbjct 3721861 GCCTCTGGACTCTCAAAAGGATATCTCATCAGGATAAAGGCATCTGCCAGCCCTTGTACT 3721802 Query 37534 CCGATACCTATGGGTCTATGTTTCTTATTAGAT 37566 || || || ||||||||||| ||||| ||| Sbjct 3721801 CCAATTCCAATGGGTCTATGGCGTTTATTTGAT 3721769 >seq64 Length=12756018 Score = 91.5 bits (100), Expect = 1e-13 Identities = 210/315 (67%), Gaps = 1/315 (0%) Strand=Plus/Minus Query 11891 TCTCTTACATATGTATCTATTAATAAACTATACATTTCTGAATGAATATTTTCCATAGCT 11950 ||||| | ||| |||||||| | || || ||||| ||||| |||| ||| || || Sbjct 2273454 TCTCTGATATAGGTATCTATGAGCAAGCTGTACATCTCTGAGTGAACATTCTCGATGAGG 2273395 Query 11951 ATTTGAAATCCATAGAAACATCGTGCCTCTGAACACTGTACATCCACATAAAATCTTTCC 12010 || || || || ||||| || || ||||| | ||| || ||| || | ||| Sbjct 2273394 ATCTGGAAGCCGTAGAAGCAGCGGGCCTCAGGGACCTGCACCTCCTGGCTGAAGCGCTCC 2273335 Query 12011 GCTAAATTCTCATTTACAATACCATCACTAGATGCAAAAA-ATGCTAGTATATGTTTTAT 12069 | || || ||||||||||| |||||| | | |||||||| | |||| | || || Sbjct 2273334 ACCAAGTTTTCATTTACAATTCCATCATTTGCTGCAAAAAGAGGCTAAGACGTGAGAAAT 2273275 Query 12070 AAAGTATTTTTCGTCTTTAGTTAATTTATCCCAATCATCTAAATCTTTTGATAAATCTAC 12129 ||||||||| || || | | |||| ||| | | | ||| ||||||| ||| || Sbjct 2273274 AAAGTATTTCTCATCCGGCTTGAGCTTATGCCAGTGAGGCAGATCCTTTGATAGATCAAC 2273215 Query 12130 TTCTTCAACGGTCCAAAAACTTGCCACTGATTGTTTATACATTTTCCAGATATCATGATA 12189 || || | ||||| || || | || || ||||| |||||||| || | || Sbjct 2273214 CTCCTCTGCCGTCCAGAAGGATGTCTGCACCTGCTTGTACATCTTCCAGATGTCGGGGTA 2273155 Query 12190 CTTAATAGGGAAAAT 12204 || || ||||| || Sbjct 2273154 CTGGATGGGGAAGAT 2273140 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 468483013444400