Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Octodon_20degus_20[refseq_20GCF_5F000260255.1_202012-05-01] 7,135 sequences; 2,995,889,303 total letters Query= NC_003391.1 Length=205719 Score E Sequences producing significant alignments: (Bits) Value seq288 448 6e-121 seq187 219 6e-52 seq206 187 3e-42 seq47 156 6e-33 seq146 129 8e-25 seq151 120 4e-22 seq64 100 4e-16 >seq288 Length=2168581 Score = 448 bits (496), Expect = 6e-121 Identities = 941/1394 (68%), Gaps = 18/1394 (1%) Strand=Plus/Plus Query 65415 CCTACATATGTATCGTATGGTCCTTCCTTCTCAGCTAGTTCACAACTCGCCTCTAATGCA 65474 ||| |||| | || ||||| || || || ||||| ||||| || || || | || Sbjct 510321 CCTTCATAGATTTCATATGGGCCAAGCTCCTTGGCTAGCTCACAGCTGGCTTCCAGGGCT 510380 Query 65475 CCGTAATAAATGGTTTCGAAGATCTTCTTATTTAGATCTTGTGCTTCCAGGCTATCAAAT 65534 || |||||||| ||||| | ||| | ||||||| || || || | || ||||| Sbjct 510381 CCATAATAAATAGTTTCAAGGATTTATTTATTTAATAACTGGGCCTCTATACTCTCAAAA 510440 Query 65535 GGATAATTTAAGAGAATAAACGCGTCTGCTAATCCTTGAACACCAATACCGATAGGTCTA 65594 ||||| | | || ||||| | ||| | | ||||| || ||||| || || |||||| Sbjct 510441 GGATATCTCATCAGGATAAAGGTATCTACCAGCCCTTGTACTCCAATTCCAATGGGTCTA 510500 Query 65595 TGTCTCTTATTAGAGATTTCAGCTTCTGGAATAGGATAATAATTAATATCTATAATTTTA 65654 || | ||||| || | | || ||||| | |||||| | | ||||| ||||||||| Sbjct 510501 TGGCATTTATTTGATAAATGTGCCTCTGGGACAGGATAGT---TTATATCGATAATTTTA 510557 Query 65655 TTGAGATTTCTGACAATTACTTTGACCACATCCTTCAGTTTGAGAAAATCAAATCGCTCA 65714 || | ||||| |||||| ||||| || || || ||| ||| || || | Sbjct 510558 TTCAAATTTCGGACAATAGCTTTGGTGACTTCTGCCAATTTCTCAAAGTCGTATGTGTGT 510617 Query 65715 TCTATT---ACAAACATGTTCAATGCAACAGATGCCAGATTACAAACGGCTACCTCATTA 65771 ||| | ||| |||| |||| || | || |||| |||||||| || |||||||| Sbjct 510618 TCTGGTGTAACATACATATTCAGGGCCAGGGAAGCCAAGTTACAAACTGCAACCTCATTT 510677 Query 65772 GCATCCGCATATTGTATTATCTCAGTGCAAAGATTACTACACTTGATGGTTCCTAAATTT 65831 | ||||| | ||| || ||||| || || || || ||||| ||||| | || Sbjct 510678 TTGCTGGTATATTCAACTATTTCTGTGCACAGGTTGCTGCATTTGATTGTTCCCAGGTTC 510737 Query 65832 TGTTGATTACTCTTTTTGTTACACGCATCCTTATAAAGAATGAATGGAGTACCAGTTTCA 65891 || || || ||||| ||||| | ||| || || || ||| | | ||||| | || Sbjct 510738 TGCTGGTTGCTCTTCCGATTACAGGAATCTTTGTAGAGCATGTACAGGGTACCCGGCTCT 510797 Query 65892 ATCTGAGATTCTATAATCGCTTTCCAGA-CGACTCGAGCCTTTATTATAGATTTGT---- 65946 ||||||| || | || | | ||| | | || |||| |||| | |||| Sbjct 510798 GTCTGAGACTCAGTGATGGTGTACCAAAGCTGCT-GAGCTTTTACAAC---TTTGCGAAC 510853 Query 65947 ATCTCTTTTCTCTTTCGTATAGTGTATACAATCGTTCGAACTCGTCTCCCCAAACATTGT 66006 || | || | |||| || | ||| || || || || ||||||||||| | | Sbjct 510854 ATGACCTTGTT-TTTCATAACTTTCATATAACTTCTCAAATTCCTCTCCCCAAACCTCAT 510912 Query 66007 CCAATCCAGGACATTCATCCGGACACATCAACGACCACTCTCCGTCATCCTTCACTCGTT 66066 ||| |||||||| |||| ||||||| ||| ||||| || | | || ||||||| Sbjct 510913 CCAGGCCAGGACACTCATTTGGACACAGCAAAGACCAGTCCTGATTAGTCTCTACTCGTT 510972 Query 66067 TCATAAAGAGATCAGGAATCCAAAGAGCTATAAATAAATCTCTGGTTCTATGTTCCTCGT 66126 |||| ||||||| |||||||||| || | || | || |||| | || || || | Sbjct 510973 TCATGAAGAGATTCAGAATCCAAAGGGCAAAGAAAAGATTCCTGGCACGCTGCTCTTCTT 511032 Query 66127 TTCCTGTATTCTTTTTAAGATCGAGGAACGCCATAATATCATAATGCCACGGTTCCAAGT 66186 ||||||| |||||||| | ||| || ||| | | || || ||||||| || |||| || Sbjct 511033 TTCCTGTGTTCTTTTTTAAATCAAGAAACTCAAAGATGTCTAAATGCCAAGGCTCCAGGT 511092 Query 66187 ATATGGCCATAACTCCAGGCCGTTTGTTTCCTCCCTGATCTATGTATCTAGCGGTGTTAT 66246 | || || | | ||||| | |||||||| || ||||| | || | ||| ||||| | Sbjct 511093 AAATAGCAAATGCCCCAGGGCACTTGTTTCCACCTTGATCAACATAACGAGCTGTGTTGT 511152 Query 66247 TATAAACTCTCAACATTGGAATAATACCATTGGATGTACCATTGGTCCCGGAGATATAGC 66306 |||| ||||||| |||||| | || ||||| || | ||||||||||| | || |||| Sbjct 511153 TATACACTCTCAGCATTGGTACAAGGCCATTAGAATTGCCATTGGTCCCAGCTATGTAGC 511212 Query 66307 TTCCACTTGCACGAATATTACTAATTGATAGACCTATTCCCCCTGCCATTTTAGAGATTA 66366 | ||| | || | |||| ||| | | | ||| ||||| || || |||||| || | Sbjct 511213 TGCCAGTAGCCCAAATACAACTCACAGTGACACCAATTCCTCCAGCGGATTTAGAAATCA 511272 Query 66367 ATGCGCATCGTTTTAACGTATCATAGATGCCCTCTATACTATCATCCATCATGTTAAGTA 66426 |||| || | || | || ||||| ||||| || | || ||||| |||| | || | Sbjct 511273 ATGCACACTGCTTCAGAGTGTCATAAATGCCTTCGGTGCTGTCATCTTTCATACTCAGAA 511332 Query 66427 GAAAACAGCTAGACATTTGGTGACGACTAGTTCCCGCATTAAATAAGGTAGGAGAAGCGT 66486 | |||||||| || | ||| | | | || | ||||| || | | |||||||| | Sbjct 511333 GGAAACAGCTTGAAAGTTGTGGGCAGTTGGTACTAGCATTGAAGAGAGAGGGAGAAGCAT 511392 Query 66487 GCGTAAACCATTTTTCAGAAAGTAGATTGTACGTCTCAATAGCTGAGTCTATATCCCATT 66546 | |||||||| || | ||||| || ||||| || ||||| || | ||||| || || Sbjct 511393 GAGTAAACCACTTCTGGGAAAGAAGGTTGTATGTTTCAATTGCAGCCTCTATGTCTTCTT 511452 Query 66547 GATGAATTCCTACTGCGACACGCATTAACATGTGCTGAGGTCTTTCAACGATCTTGTTGT 66606 ||||| || || | || | ||| ||||| ||||| || |||||| | | || | Sbjct 511453 TGTGAATCCCCACAGACACCCTCATCAACATATGCTGCGGCCTTTCAGCCACTTTTCCAT 511512 Query 66607 TTATTTTCAACAAGTAGGATTTTTCCAAAGTTTTAAAACCAAAATAGTTGTATGAAAAGT 66666 | || |||||||| ||||| | |||| ||| ||||| ||||| || || || || || | Sbjct 511513 TGATCTTCAACAAATAGGACCTCTCCAGAGTCTTAAAGCCAAAGTAATTATAAGAGAAAT 511572 Query 66667 CTCGTTCGTAAATAATAACCGAGTTGAGTTTATCCTTATATTTGTTAACTACATCCATGG 66726 ||| || || || || | || || || ||| |||| ||| | ||||| | Sbjct 511573 CTCAGTCATAGATGATGGCAGAATTCAGGCGATCTTTATGGGCCAAAACAATATCCAGTG 511632 Query 66727 TAATACTT-GAAATAATCGGAGAATGTTTCCCATTTTTAGGATTGACATAGTTGAATAAA 66785 | |||| | | || ||||||||||| ||||| | ||||| | ||||||||| | Sbjct 511633 T-TGACTTGGCCACCATGGGAGAATGTTTGCCATTATGTGGATTTATATAGTTGAAGAGG 511691 Query 66786 TCCTCCATCACTTC 66799 |||||||| || || Sbjct 511692 TCCTCCATTACATC 511705 Score = 167 bits (184), Expect = 3e-36 Identities = 298/430 (69%), Gaps = 9/430 (2%) Strand=Plus/Plus Query 64863 GGTTTCGTACGTAGATAGTACATTCCCGTTTTTAGACCGAGACTCCATCCGTAAAAATGC 64922 ||| | || | || ||| ||||| || || || | | | || |||| | || || || Sbjct 508938 GGTCTTGTCCTTAAATAATACATCCCAGTCTTCAAATCCAGCTTCCAAGCATAGAAGTGT 508997 Query 64923 ATACTCGTTAGTTTGGAATAACTCGGATCTGCTATATGGATATTCATAGATTGACTTTGA 64982 |||| || || ||| || | || || || || ||||| |||| | | || || ||| Sbjct 508998 GTACTGGTGAGCTTGTG-TAGTTGGGCTCAGCAATGTGGATGTTCAAAAACTGGCTCTGA 509056 Query 64983 TCGATGAAGGCTCCCCTGTCTGCAGCCATTTTTATGATCGTCTTTTGTGGAATTTCCCAA 65042 || ||||| || || | || |||||||| || | || || || || | |||||||| Sbjct 509057 TCAATGAAAGCACCACGATCAGCAGCCATCTTCAGGACAGTTTTCTGAGAGATTTCCCAT 509116 Query 65043 ATAGTTTTATAAACTCGCTTAATATCTTCTGGAAGGTTTG---TAT--TCTGAATGGATC 65097 | || ||||||| | || | || || |||| ||| ||| |||| || || | Sbjct 509117 ACTGTCTTATAAAGCTGGTTCAGGTCATCGGGAA--TTTCCACTATGCTCTGGATAGAGC 509174 Query 65098 CACCATCTGCCATAATCCTATTCTTGATCTCATCATTCCATAATTTTCTCTCGGTTAAAA 65157 || || |||||| ||| || || || ||||||||||| | |||||| | | Sbjct 509175 CATTGCAGGCAATAATCTGATTTTTCATTTCTTCATTCCATAAGCCCCGCTCGGTAAGAT 509234 Query 65158 CTCTAAGGAGATGCGGATTAACTACTTGAAATTCTCCAGACAATACTCTCCGAGTGTAAA 65217 || | | || || ||||| || | ||||||||||| || || ||||| ||||||| | Sbjct 509235 CTTTCAATAG-TGAGGATTTACAATCTGAAATTCTCCTGATAAGACTCTTAGAGTGTAGA 509293 Query 65218 TATTACTGGTATACGGTTCCACAGACTCATTATTTCCCAAAATTTGAGCAGTTGATGCAG 65277 | || |||||||| ||||| | ||||||||| |||| ||| || ||||||||||| |||| Sbjct 509294 TGTTGCTGGTATAAGGTTCAATAGACTCATTTTTTCTCAAGATCTGAGCAGTTGAAGCAG 509353 Query 65278 TCGGCATAGG 65287 | | ||| || Sbjct 509354 TAGTCATGGG 509363 >seq187 Length=5094135 Score = 219 bits (242), Expect = 6e-52 Identities = 518/777 (67%), Gaps = 9/777 (1%) Strand=Plus/Plus Query 35811 TTTAAAAATCAACATCTAGAGAAAAATGATTGTCTTCTTGA---GACATAACTCCCATTT 35867 ||||||| ||| |||| || |||| ||| || || |||||||||||||| Sbjct 4782 TTTAAAAGTCAGCATCCCAAGTAAAAGAATTCTCCATAGGAATGGACATAACTCCCATAG 4841 Query 35868 TTTGGTATTCACCCACACGTTTTTCGAAAAAATTAGTTTTACCTTCTAATGATATATTT- 35926 | || || ||||| || || || || || || || || ||||| || || |||||| Sbjct 4842 TCTGATACTCACCAACTATCTTCTCAAAGAAGTTTGTCTTCCCTTCCAAAGAAATATTTC 4901 Query 35927 TCCATGAAATCGAATGGATTGATAACATTATAAAtttttttAAATCCCAATTCAGAAATC 35986 || ||||| || |||||||| || ||| || | || || | ||| || Sbjct 4902 TCTATGAAGTCAAATGGATTTTCCACTCGGAAAACCTTGCTGAAGCCTAGTTCCAGCATG 4961 Query 35987 AATCTATCTGCGACAAATTCTATATATGTTTTCATCATTTCACAATTCATTCCTATAAGT 36046 | || || || ||||| | || | |||||||| | | ||||| || ||| | Sbjct 4962 AGCCTGTCAGCCACAAACTTGATGCACTGTTTCATCAAATTGGAGTTCATCCCGATAGGC 5021 Query 36047 TTAACTGGAAGAGCCACAGTAAGAAATTCTTGTTCAATAGAGACCGCGTCTGTTATAATA 36106 || || || | || | || || || || || ||||| || |||| | | ||| Sbjct 5022 TTCACCGGCAAGCCCTCCGTGAGGAACTCCTGCTCAATGCCGATGGCGTTGATGACAATC 5081 Query 36107 GATATTACTGTTTCTTCACTCGGTGGATACAATAAATGTTTAAACATCAAACATGCGAAA 36166 | || | | || ||| | || | || || ||||||| || |||| Sbjct 5082 TCCCTCACCCTCTGCTCCAACGGCTTGTGCACCAGGTGCTTGAACATCAGGCACACGAAG 5141 Query 36167 TCGCAGTGTAGACCCTCGTCTCTACTAATTAATTCGTTGGAAAACGTGAGTCCGGGCATT 36226 || || | | ||||||| ||| ||||| | |||||||||||| ||||| || ||||| Sbjct 5142 TCACAACGCAAGCCCTCGTATCTGCTAATGAGTTCGTTGGAAAAGGTGAGGCCAGGCATG 5201 Query 36227 AGGCCACGCTTTTTAAGCCAAAATATGGACGCAAATGATCCAGAAAAGAAAATTCCTTCT 36286 ||||| || || || ||||| || || ||||||| || |||||||||||||||||||| Sbjct 5202 AGGCCCCGTTTCTTGAGCCAGAAGATCAACGCAAAAGAACCAGAAAAGAAAATTCCTTCC 5261 Query 36287 ACTGCCGCAAAGGCAATAA-GTCTCTCTCCATAACCGGCAC---TGTCATGTATCCACTT 36342 || | ||||||| | || | |||||||| ||| |||| |||||| Sbjct 5262 ACAGTGACAAAGGCCACCGTGTGT-TCTCCATATGTGGCCTCTTTGTCCCCTATCCAGCG 5320 Query 36343 TTGAGCCCAATCGGCCTTCTTTTTTACACAAGGCATTGTCTCTATAGCATTAAAGAGATA 36402 ||||| || |||||||| || ||||| | || ||||| | ||||| |||||| | Sbjct 5321 CAACGCCCAGTCTGCCTTCTTCTTCACACAGGCCACGGTCTCAGTGGCATTGAAGAGAAA 5380 Query 36403 GtttttttCATTACTATCTTTAACATATGTATCAATCAAAAGACTATACATTTCCGAATG 36462 | |||| | |||| ||| || || || || | || | |||||||||||||| Sbjct 5381 CTCCCTTTCTTGGGAATCTCTAATGTAAGTGTCCATAAGGAGTGTGTACATTTCCGAATG 5440 Query 36463 AATGTTTTCAATGGCCATTTGAAATCCGTAGAAACATCTAGCCTCGGTAATCTGTACTTC 36522 | |||||| ||||| || || || ||||||||||| | || || ||||| || ||||| Sbjct 5441 CAGGTTTTCCATGGCAATCTGGAAGCCGTAGAAACACCGGGCTTCTGTAATTTGAACTTC 5500 Query 36523 TGTACAAAATCGTTCTGCTAAATTTTCATTCACTATTCCGTCACTGGCTGCAAAAAA 36579 | |||||| || | | ||| ||| | ||||| || || ||||| | |||||| Sbjct 5501 TTGGTTAAATCGCTCCACCAGATTCTCACTGACTATGCCATCGCTGGCAGGAAAAAA 5557 >seq206 Length=4534510 Score = 187 bits (206), Expect = 3e-42 Identities = 718/1106 (65%), Gaps = 24/1106 (2%) Strand=Plus/Plus Query 65412 GATCCTACATATGTATCGTATGGTCCTTCCTTCTCAGCTAGTTCACAACTCGCCTCTAAT 65471 || ||| |||| || || ||||| || | || || ||||| ||||| || || || || Sbjct 2975816 GAGCCTTCATAGGTTTCATATGGGCCATGCTCCTTGGCTAGATCACAGCTGGCTTCCAAG 2975875 Query 65472 GCACCGTAATAAATGGTTTCGAAGATCTTCTTATTTAGATCTTGTGCTTCCAGGCTATCA 65531 || || ||||||| || | | ||| | |||||| | || | || | || ||| Sbjct 2975876 GCTCCATAATAAACAGTCACAATGATTTGGTTATTTCAAAACTGGGACTCTGGACTCTCA 2975935 Query 65532 AATGGATAATTTAAGAGAATAAACGCGTCTGCTAATCCTTGAACACCAATACCGATAGGT 65591 || | || | | || ||||| || |||| | | ||| || |||| | || || Sbjct 2975936 AAATGTTATCTCATCAGGATAAAAGCATCTGTGAGCCGTTGTACTCCAACTTCAATGGGG 2975995 Query 65592 CTATGTCTCTTATTAGAGATTTCAGCTTCTGGAATAGGATAATAATTAATATCTATAATT 65651 ||| ||||| || | | || |||| | ||| || || || || || |||||| Sbjct 2975996 AAATGATGTTTATTTGATAAGTGTGCCTCTGAGACAGGGTAGTATTTTATGTCAATAATT 2976055 Query 65652 TTATTGAGATTTCTGACAATTACTTTGACCACATCCTTCAGTTTGAGAAAATCAAATC-G 65710 ||||| |||||| |||||| ||| || || ||| ||| | | ||| || | Sbjct 2976056 TTATTCAGATTTTGGACAATATCTTCCGTGACTTCTGTCAATTTCTCATAGTCATATGTG 2976115 Query 65711 CTCATCTATTACAAACATGTTCAATGCAACAGATGCCAGATTACAAACGGCTACCTCAT- 65769 || | | ||| |||| |||| || | || |||| ||||||| || ||||||| Sbjct 2976116 TTCTGATGTAACATACATATTCAGGGCCAGGGAAGCCAAGATACAAACTGCAACCTCATC 2976175 Query 65770 -TAGCATCCGCATATTGTATTATCTCAGTGCAAAGATTACTACACTTGATGGTTCCTAAA 65828 | || | |||| || || || ||| || || || || ||||| ||||| | Sbjct 2976176 TTTGCTG--GTCTATTCTACCATTTCTGTGTGCAGGTTGCTGCATTTGATTGTTCCCAGG 2976233 Query 65829 TTTTGTTGATTACTCTTTTTGTTACACGCATCCTTATAAAGAATGAATGGAGTACCAGTT 65888 || | || || ||||| |||| | | || ||| || || |||||||| ||||| || Sbjct 2976234 TTCTTCTGGTTGCTCTTCCAGTTATAAGAATGCTTGTAGAGCATGAATGGGGTACCCGTC 2976293 Query 65889 TCAATCTGAGATTCTATAATCGCTTTCCAGACGACTCGAGCCTTTATTATAGATTTGT-A 65947 | ||||||| || || || | | ||| | | || | ||| | | | ||| | Sbjct 2976294 TG--TCTGAGACTCAATGATGACATACCA-ATG-CTGCTGAATTT-TCACAACTTTACGA 2976348 Query 65948 TCTCTT--TTCTCTTTCGTATAGTGT-ATACAATCGTTCGAACTCGTCTCCCCAAACATT 66004 | | || | |||| || | | | ||| || || || || ||||||||||| | Sbjct 2976349 ACACGACCTTGTTTTTCATA-ACTCTCATATAAGGTATCAAATTCCTCTCCCCAAACCTC 2976407 Query 66005 GTCCAATCCAGGACATTCATCCGGACACATCAACGACCACTC-TCCGTCATCCTTCACTC 66063 ||||| |||||||| ||| | |||||||| || || || | | || | | || Sbjct 2976408 GTCCAGACCAGGACACCCATTTTG-CACATCAAAGATCAGTCCTGAATAGTCTCTGA-TC 2976465 Query 66064 GTTTCATAAAGAGATCAGGAATCCAAAGAGCTATAAATAAATCTCTGGTTCTATGTTCCT 66123 |||||| |||||||| |||||||| | || | || | ||| || | ||||| Sbjct 2976466 ATTTCATGAAGAGATCCAGAATCCAAGGTGCAAAGAAAAGATCCCTAGCATGCTGTTCTC 2976525 Query 66124 CGTTTCCTGTATTCTTTTTAAGATCGAGGAACGCCATAATATCATAATGCCACGGTTCCA 66183 | ||||||||||||||| | ||| || ||| | | || || ||||| | |||| Sbjct 2976526 CCTTTCCTGTATTCTTT---AAATCAAGAAACTCAAGCATTTCTAAATGCTGAGCCTCCA 2976582 Query 66184 AGTATATGGC-CATAACTCCAGGCCGTTTGTTTCCTCCCTGATCTATGTATCTAGCGGTG 66242 || | || | || || ||| | | || ||||| | |||| | || ||| | ||| Sbjct 2976583 AGGAAATAACAAATGAC-CCAAGGCACTTATTTCCACTTTGATGAACATAACTATCTGTG 2976641 Query 66243 TTATTATAAACTCTCAACATTGGAATAATACCATTGGATGTACCATTGGTCCCGGAGATA 66302 || ||||| ||||||| |||||| |||| |||||| || | |||||||||| | || Sbjct 2976642 TTGTTATACACTCTCAGCATTGGTATAAGACCATT-AATATTCCATTGGTCCAAGCTATG 2976700 Query 66303 TAGCTTCCACTTGCACGAATATTACTAATTGATAGACCTATTCCCCCTGCCATTTTAGAG 66362 |||| || | || |||| | ||| | | | ||| ||||| || || |||||| Sbjct 2976701 CAGCTATCAGTAGCCTGAATGTAACTCACAGCAACACCAATTCCACCAGCAGATTTAGAA 2976760 Query 66363 ATTAATGCGCATCGTTTTAACGTATCATAGATGCCCTCTATACTATCATCCATCATGTTA 66422 || ||||| | | || | || | || ||||| | || || ||||| |||| | Sbjct 2976761 ATCAATGCATACTGCTTCAGAGTGTAGTAAATGCCTTTGATGCTGTCATCTTTCATAATC 2976820 Query 66423 AGTAGAAAACAGCTAGACATTTGGTGACGACTAGTTCCCGCATTAAATAAGGTAGGAGAA 66482 || |||||| |||| || ||||| | | | || | | ||| || | || |||||| Sbjct 2976821 AGAAGAAAAAAGCTTGAAATTTGTGGGCAGTTGGTATCAGAATTGAAGAGAGTGGGAGAA 2976880 Query 66483 GCGTGCGTAAACCATTTTTCAGAAAG 66508 || || ||||| || || | | |||| Sbjct 2976881 GCATGAGTAAAGCACTTATTAAAAAG 2976906 Score = 113 bits (124), Expect = 6e-20 Identities = 253/375 (67%), Gaps = 5/375 (1%) Strand=Plus/Plus Query 64906 TCCATCCGTAAAAATGCATACTCGTTAGTTTGGAATAACTCGGATCTGCTATATGGATAT 64965 |||| || || || |||||||| || || | | |||| | || || || || ||||| | Sbjct 2975273 TCCAACCATAGAAGTGCATACTGGTGAGCTCGCTATAATTGGGCTCAGCCATGTGGATGT 2975332 Query 64966 TCATAGATTGACTTTGATCGATGAAGGCTCCCCTGTCTGCAGCCATTTTTATGATCGTCT 65025 ||| ||| || | ||||| | || || || || | |||||| || | || || | Sbjct 2975333 TCAAAGACTGGATCTGATCAACCAAAGCACCATGATCAGAAGCCATCTTGAGGACAGTTT 2975392 Query 65026 TTTGTGGAATTTCCCAAATAGTTTTATAAACTCGCTTAATATCTTCTGGAAGGTT-TGTA 65084 | || | |||||||| | ||||||| |||| | || || |||| | | || Sbjct 2975393 TCTGAGAGATTTCCCATCCGATCTTATAAAGCTGCTTCAGGTCATCAGGAATTTCCTCTA 2975452 Query 65085 T--TCTGAATGGATCCACCATCTGCCATAATCCTATTCTTGATCTCATCATTCCATAATT 65142 | |||| || || ||| || |||||| ||| || || | | ||||||||| Sbjct 2975453 TGCTCTGGATAGAGCCATTGCAGGCAATAATCTGATTTTTCATTCCTTTATTCCATAAGC 2975512 Query 65143 TTCTCTCGGTTAAAACTCT-AAGGAGATGCGGATTAACTACTTGAAATTCTCCAGACAAT 65201 ||| | | | || | || ||| | ||||| || | | ||||||| | ||||| Sbjct 2975513 CCTGCTCCATAAGATCTTTCAATAAGA-GAGGATTTACAATCTTAAATTCTTCTGACAAG 2975571 Query 65202 ACTCTCCGAGTGTAAATATTACTGGTATACGGTTCCACAGACTCATTATTTCCCAAAATT 65261 ||| | | |||||| || || |||||||| |||| | ||||| |||||| ||||| || Sbjct 2975572 ACTTTTCAAGTGTAGATGTTGCTGGTATAAAGTTCAATAGACTTATTATTCCCCAAGATC 2975631 Query 65262 TGAGCAGTTGATGCA 65276 ||||||||||| ||| Sbjct 2975632 TGAGCAGTTGAAGCA 2975646 >seq47 Length=15109762 Score = 156 bits (172), Expect = 6e-33 Identities = 157/204 (77%), Gaps = 0/204 (0%) Strand=Plus/Plus Query 9227 TTATTTCTTATTAGATACTTCCAAAAGCTGTAACAGATGCAAGAACAGATTGATGATATC 9286 ||| || |||||| | ||||||||| ||||||| || ||||| |||||||| ||||| Sbjct 2556581 TTACTTTTTATTAACTGCTTCCAAAAATCGTAACAGGTGTAAGAATAGATTGATAATATC 2556640 Query 9287 CAAGTAGAAATTGATAGAGGCTAACACATAGTCTTCAGGCGAGAGCTTATGTATTAGTGA 9346 |||||||| |||||| ||||| ||||| ||||| || || | ||||| |||||||| Sbjct 2556641 CAAGTAGAGGCTGATAGCAGCTAATACATACTCTTCGGGAGATAATTTATGCATTAGTGA 2556700 Query 9347 GTGCGTGTCATAGATAATGAATCCGCAGAATACAAGGGCCCCAAAAGCAGACAGGACCAG 9406 ||| ||||| | || || ||||| ||||| | |||||| || |||| | |||||| Sbjct 2556701 GTGAGTGTCTAAAATGATAAATCCACAGAAAAGAAGGGCTCCTCCCGCAGCTAAGACCAG 2556760 Query 9407 CTCCACTGTTTCACTTTGCACAAA 9430 ||||| ||| ||||| || | ||| Sbjct 2556761 CTCCATTGTCTCACTGTGAAAAAA 2556784 >seq146 Length=7541600 Score = 129 bits (142), Expect = 8e-25 Identities = 109/134 (81%), Gaps = 0/134 (0%) Strand=Plus/Minus Query 65181 ACTTGAAATTCTCCAGACAATACTCTCCGAGTGTAAATATTACTGGTATACGGTTCCACA 65240 || ||||||||||| ||||| ||||| |||||||| || || |||||||| ||||| | | Sbjct 3726378 ACCTGAAATTCTCCTGACAAGACTCTTCGAGTGTAGATGTTGCTGGTATAAGGTTCAATA 3726319 Query 65241 GACTCATTATTTCCCAAAATTTGAGCAGTTGATGCAGTCGGCATAGGTGCCACCAATAAA 65300 ||||| ||||||||||| || ||||||||||| ||||| ||||| || || | | || | Sbjct 3726318 GACTCGTTATTTCCCAAGATCTGAGCAGTTGAAGCAGTAGGCATTGGGGCAATAAGTAGA 3726259 Query 65301 CTATTTCTAAGACC 65314 || ||||| | ||| Sbjct 3726258 CTGTTTCTTATACC 3726245 Score = 93.3 bits (102), Expect = 6e-14 Identities = 101/134 (75%), Gaps = 0/134 (0%) Strand=Plus/Minus Query 66060 ACTCGTTTCATAAAGAGATCAGGAATCCAAAGAGCTATAAATAAATCTCTGGTTCTATGT 66119 ||||||||||| |||||||| ||||||||||| || | || | |||||||| | || Sbjct 3714759 ACTCGTTTCATGAAGAGATCTGGAATCCAAAGGGCAAAGAAAAGATCTCTGGCACGCTGC 3714700 Query 66120 TCCTCGTTTCCTGTATTCTTTTTAAGATCGAGGAACGCCATAATATCATAATGCCACGGT 66179 || || |||||||| ||||| || | ||| || ||| | | || || ||||||| || Sbjct 3714699 TCTTCCTTTCCTGTGTTCTTCTTTAAATCAAGAAACTCAAAGATGTCTAAATGCCAAGGC 3714640 Query 66180 TCCAAGTATATGGC 66193 |||| ||| || || Sbjct 3714639 TCCAGGTAAATAGC 3714626 >seq151 Length=7174217 Score = 120 bits (132), Expect = 4e-22 Identities = 99/121 (82%), Gaps = 0/121 (0%) Strand=Plus/Minus Query 36180 CCTCGTCTCTACTAATTAATTCGTTGGAAAACGTGAGTCCGGGCATTAGGCCACGCTTTT 36239 |||||||||| ||||| | |||||||||||| ||||| || ||||| || || || || | Sbjct 1182556 CCTCGTCTCTGCTAATGAGTTCGTTGGAAAAGGTGAGGCCAGGCATGAGTCCTCGTTTCT 1182497 Query 36240 TAAGCCAAAATATGGACGCAAATGATCCAGAAAAGAAAATTCCTTCTACTGCCGCAAAGG 36299 | ||||| || || |||||||| || ||||||||||| || ||||| || || ||||||| Sbjct 1182496 TGAGCCAGAAGATTGACGCAAAAGAACCAGAAAAGAAGATGCCTTCCACAGCGGCAAAGG 1182437 Query 36300 C 36300 | Sbjct 1182436 C 1182436 Score = 95.1 bits (104), Expect = 2e-14 Identities = 93/120 (78%), Gaps = 0/120 (0%) Strand=Plus/Minus Query 36418 ATCTTTAACATATGTATCAATCAAAAGACTATACATTTCCGAATGAATGTTTTCAATGGC 36477 |||||||| || || ||||| | ||||| |||||||||||||| |||||||| || || Sbjct 1180952 ATCTTTAATGTAAGTGTCAATAAGCAGACTGTACATTTCCGAATGTATGTTTTCCATAGC 1180893 Query 36478 CATTTGAAATCCGTAGAAACATCTAGCCTCGGTAATCTGTACTTCTGTACAAAATCGTTC 36537 || || || ||||||||||| | || || ||||| || |||||| | |||||| || Sbjct 1180892 AATCTGGAAGCCGTAGAAACAACGGGCTTCTGTAATTTGAACTTCTTGGCTAAATCGCTC 1180833 >seq64 Length=12756018 Score = 100 bits (110), Expect = 4e-16 Identities = 212/315 (67%), Gaps = 1/315 (0%) Strand=Plus/Minus Query 36419 TCTTTAACATATGTATCAATCAAAAGACTATACATTTCCGAATGAATGTTTTCAATGGCC 36478 ||| | | ||| ||||| || | | || ||||| || || |||| || || ||| Sbjct 2273454 TCTCTGATATAGGTATCTATGAGCAAGCTGTACATCTCTGAGTGAACATTCTCGATGAGG 2273395 Query 36479 ATTTGAAATCCGTAGAAACATCTAGCCTCGGTAATCTGTACTTCTGTACAAAATCGTTCT 36538 || || || |||||||| || | ||||| | | ||| || || | || || || Sbjct 2273394 ATCTGGAAGCCGTAGAAGCAGCGGGCCTCAGGGACCTGCACCTCCTGGCTGAAGCGCTCC 2273335 Query 36539 GCTAAATTTTCATTCACTATTCCGTCACTGGCTGCAAAAA-ACGCCAATACATGTTTTAT 36597 | || |||||||| || ||||| ||| | |||||||||| | || || || || || Sbjct 2273334 ACCAAGTTTTCATTTACAATTCCATCATTTGCTGCAAAAAGAGGCTAAGACGTGAGAAAT 2273275 Query 36598 AAAATATTTTTCGTTTGGTGTTAGTTTATTCCAATCATTGATATCTTTAGATATATCCAC 36657 ||| ||||| || | || | || |||| ||| | | | ||| || |||| ||| || Sbjct 2273274 AAAGTATTTCTCATCCGGCTTGAGCTTATGCCAGTGAGGCAGATCCTTTGATAGATCAAC 2273215 Query 36658 TTCTTCCACTGTCCAAAATGATGCCTCTGCCTTTTTATACATATTCCAGATGTCATGATA 36717 || || | ||||| || |||| || ||| || ||||| ||||||||||| | || Sbjct 2273214 CTCCTCTGCCGTCCAGAAGGATGTCTGCACCTGCTTGTACATCTTCCAGATGTCGGGGTA 2273155 Query 36718 TTGAATTGGAAAAAT 36732 || || || || || Sbjct 2273154 CTGGATGGGGAAGAT 2273140 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 658114099213400