Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Octodon_20degus_20[refseq_20GCF_5F000260255.1_202012-05-01]
7,135 sequences; 2,995,889,303 total letters
Query= NC_003494.1
Length=111362
Score E
Sequences producing significant alignments: (Bits) Value
seq151 102 6e-17
seq187 86.0 4e-12
>seq151
Length=7174217
Score = 102 bits (112), Expect = 6e-17
Identities = 95/121 (79%), Gaps = 0/121 (0%)
Strand=Plus/Plus
Query 22748 TGGCCTTTGCGGCTGTTGAAGGCGTCATGTTTTCTGGGTCATTTGCGGCCATATTCTGGC 22807
|||||||||| ||||| |||||| || | |||||||| || |||||| | || |||||||
Sbjct 1182434 TGGCCTTTGCCGCTGTGGAAGGCATCTTCTTTTCTGGTTCTTTTGCGTCAATCTTCTGGC 1182493
Query 22808 TGAAGAAACGTTCGCTCATGCCAGGGTTGGCGTTTTCCAACGAGTTGATTAGCCGTGACG 22867
| |||||||| |||||||| || | | ||||||||||| | |||||| | ||||
Sbjct 1182494 TCAAGAAACGAGGACTCATGCCTGGCCTCACCTTTTCCAACGAACTCATTAGCAGAGACG 1182553
Query 22868 A 22868
|
Sbjct 1182554 A 1182554
>seq187
Length=5094135
Score = 86.0 bits (94), Expect = 4e-12
Identities = 125/177 (71%), Gaps = 0/177 (0%)
Strand=Plus/Minus
Query 22748 TGGCCTTTGCGGCTGTTGAAGGCGTCATGTTTTCTGGGTCATTTGCGGCCATATTCTGGC 22807
||||||||| |||| ||||| | | |||||||| || |||||| || |||||||
Sbjct 5277 TGGCCTTTGTCACTGTGGAAGGAATTTTCTTTTCTGGTTCTTTTGCGTTGATCTTCTGGC 5218
Query 22808 TGAAGAAACGTTCGCTCATGCCAGGGTTGGCGTTTTCCAACGAGTTGATTAGCCGTGACG 22867
| |||||||| |||||||| || | | ||||||||||| | |||||| | |||
Sbjct 5217 TCAAGAAACGGGGCCTCATGCCTGGCCTCACCTTTTCCAACGAACTCATTAGCAGATACG 5158
Query 22868 AAGGTCTACACTGTGACTTTGCTTGTATGCTGTTTAGGCAAATGGCAAACAAACCGT 22924
| || | | |||||||| | || || |||| | ||| ||| |||| ||||
Sbjct 5157 AGGGCTTGCGTTGTGACTTCGTGTGCCTGATGTTCAAGCACCTGGTGCACAAGCCGT 5101
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 356202622705405
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |