Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Octodon_20degus_20[refseq_20GCF_5F000260255.1_202012-05-01] 7,135 sequences; 2,995,889,303 total letters Query= NC_003494.1 Length=111362 Score E Sequences producing significant alignments: (Bits) Value seq151 102 6e-17 seq187 86.0 4e-12 >seq151 Length=7174217 Score = 102 bits (112), Expect = 6e-17 Identities = 95/121 (79%), Gaps = 0/121 (0%) Strand=Plus/Plus Query 22748 TGGCCTTTGCGGCTGTTGAAGGCGTCATGTTTTCTGGGTCATTTGCGGCCATATTCTGGC 22807 |||||||||| ||||| |||||| || | |||||||| || |||||| | || ||||||| Sbjct 1182434 TGGCCTTTGCCGCTGTGGAAGGCATCTTCTTTTCTGGTTCTTTTGCGTCAATCTTCTGGC 1182493 Query 22808 TGAAGAAACGTTCGCTCATGCCAGGGTTGGCGTTTTCCAACGAGTTGATTAGCCGTGACG 22867 | |||||||| |||||||| || | | ||||||||||| | |||||| | |||| Sbjct 1182494 TCAAGAAACGAGGACTCATGCCTGGCCTCACCTTTTCCAACGAACTCATTAGCAGAGACG 1182553 Query 22868 A 22868 | Sbjct 1182554 A 1182554 >seq187 Length=5094135 Score = 86.0 bits (94), Expect = 4e-12 Identities = 125/177 (71%), Gaps = 0/177 (0%) Strand=Plus/Minus Query 22748 TGGCCTTTGCGGCTGTTGAAGGCGTCATGTTTTCTGGGTCATTTGCGGCCATATTCTGGC 22807 ||||||||| |||| ||||| | | |||||||| || |||||| || ||||||| Sbjct 5277 TGGCCTTTGTCACTGTGGAAGGAATTTTCTTTTCTGGTTCTTTTGCGTTGATCTTCTGGC 5218 Query 22808 TGAAGAAACGTTCGCTCATGCCAGGGTTGGCGTTTTCCAACGAGTTGATTAGCCGTGACG 22867 | |||||||| |||||||| || | | ||||||||||| | |||||| | ||| Sbjct 5217 TCAAGAAACGGGGCCTCATGCCTGGCCTCACCTTTTCCAACGAACTCATTAGCAGATACG 5158 Query 22868 AAGGTCTACACTGTGACTTTGCTTGTATGCTGTTTAGGCAAATGGCAAACAAACCGT 22924 | || | | |||||||| | || || |||| | ||| ||| |||| |||| Sbjct 5157 AGGGCTTGCGTTGTGACTTCGTGTGCCTGATGTTCAAGCACCTGGTGCACAAGCCGT 5101 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 356202622705405