Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Octodon_20degus_20[refseq_20GCF_5F000260255.1_202012-05-01] 7,135 sequences; 2,995,889,303 total letters Query= NC_004002.1 Length=149955 Score E Sequences producing significant alignments: (Bits) Value seq187 145 7e-30 seq6919 87.8 2e-12 seq64 84.2 2e-11 seq1718 82.4 7e-11 >seq187 Length=5094135 Score = 145 bits (160), Expect = 7e-30 Identities = 558/871 (64%), Gaps = 23/871 (3%) Strand=Plus/Plus Query 13566 GAAATAACGCCCATTTTTTGATATTCACTAACTCTTTTTTCAAAGAAGTTAGTTTTACCT 13625 || ||||| ||||| | ||||| |||| |||| | || ||||||||||| || || ||| Sbjct 4826 GACATAACTCCCATAGTCTGATACTCACCAACTATCTTCTCAAAGAAGTTTGTCTTCCCT 4885 Query 13626 TCCAGTGATATATTT-TCCATAAAATCAAATGGATTTATTGA--CATAAACACTTTATCA 13682 |||| || |||||| || || || |||||||||||| | | | ||| ||| | | Sbjct 4886 TCCAAAGAAATATTTCTCTATGAAGTCAAATGGATTT-TCCACTCGGAAAACCTTGCTGA 4944 Query 13683 CAACCTAGTTCTAATAGTAATCTATCAGCAATAAACTCAATATATTGAGACATTAAATCA 13742 | |||||||| | | | || ||||| | ||||| || | || ||| |||| Sbjct 4945 -AGCCTAGTTCCAGCATGAGCCTGTCAGCCACAAACTTGATGCACTGTTTCATCAAATTG 5003 Query 13743 CAATTCATACCTATTAGTTTTACAGGAATTATATTGGTTAAAAATTCTTTTTCTATAGAC 13802 | ||||| || || | || || || | | || | || || | || || Sbjct 5004 GAGTTCATCCCGATAGGCTTCACCGGCAAGCCCTCCGTGAGGAACTCCTGCTCAATGCCG 5063 Query 13803 ACAGCCTCTTTTATAATAATTGTAATAATCTCATTAGAAGGAGGATATTTTAGATGTTTA 13862 | || | | | ||| | | ||| | | || | || || || Sbjct 5064 ATGGCGTTGATGACAATCTCCCTCACCCTCTGCTCCAACGGCTTGTGCACCAGGTGCTTG 5123 Query 13863 AAAATTAAACACGCAAAATCACAATGAAGGCCCTCATCTCTACTAATAAGTTCGTTTGAA 13922 || || | ||| | || |||||| | | |||||| | ||| ||||| |||||||| ||| Sbjct 5124 AACATCAGGCACACGAAGTCACAACGCAAGCCCTCGTATCTGCTAATGAGTTCGTTGGAA 5183 Query 13923 AATGTTAATCCTGGCATCAATCCTCGtttttttAACCAAAATATTGCAGCAAATGACCCG 13982 || || | || ||||| | || ||||| || | ||| || || ||||| || || Sbjct 5184 AAGGTGAGGCCAGGCATGAGGCCCCGTTTCTTGAGCCAGAAGATCAACGCAAAAGAACCA 5243 Query 13983 GAAAAGAATATTCCCTCAACTGCAGCAAACGCTATTAATCGTTCTCCAAACGATGCTTTT 14042 |||||||| ||||| || || | |||| || | |||||||| | | || | | Sbjct 5244 GAAAAGAAAATTCCTTCCACAGTGACAAAGGCCACCGTGTGTTCTCCATATGTGGCCTCT 5303 Query 14043 TTGTTCGATATCCATTTTCTAGCCCATTCAGAtttttttttAATAAAATCCATTGTTTCA 14102 |||| | |||||| ||||| || | || || || | | | ||| || ||| Sbjct 5304 TTGTCCCCTATCCAGCGCAACGCCCAGTCTGCCTTCTTCTTCACACAGGCCACGGTCTCA 5363 Query 14103 ATAGCATTAAATAAATATTCCTTCTCTTTAGTACTTGAAATGTATGTATCAATAAGTAAG 14162 | ||||| || | | | ||| | |||| | | | |||||| || || ||||| | Sbjct 5364 GTGGCATTGAAGAGAAACTCCCTTTCTTGGGAATCTCTAATGTAAGTGTCCATAAGGAGT 5423 Query 14163 CTATACATTTCAGAGTGTATGTTTTCCATAGCTATCTGAAAACCATAAAAGCATCTAGCT 14222 | |||||||| || || | ||||||||| || ||||| || || || || || | ||| Sbjct 5424 GTGTACATTTCCGAATGCAGGTTTTCCATGGCAATCTGGAAGCCGTAGAAACACCGGGCT 5483 Query 14223 TCCGACCATTGTACTTCCGAGTAAAATCTTTCGGCCAAATTTTCATTAACTATACCATCA 14282 || | ||| ||||| || ||||| || ||| ||| ||| | ||||| ||||| Sbjct 5484 TCTGTAATTTGAACTTCTTGGTTAAATCGCTCCACCAGATTCTCACTGACTATGCCATCG 5543 Query 14283 CTAGCTGCAAAAA-----ATGCCAAT-----------ATGTTTTTAATAAAGTATTGCTC 14326 || || | ||||| || ||| |||| | ||||||||| ||| Sbjct 5544 CTGGCAGGAAAAAAAAATATAATAATAAAAAGTTAGAATGTGTGATATAAAGTATCTCTC 5603 Query 14327 TTCATTGTTGAGTTTTTTCCAAT-CGGATAAATCCTTAGAAAGATCTACTTCATCAACTG 14385 |||| || || || ||| | | || | || || |||||||| ||||| || ||| Sbjct 5604 TTCAGCCTTCAGGGCTTCCCAGTGCTGA-ATGTCTTTGGAAAGATCGACTTCCTCCGCTG 5662 Query 14386 TCCAAAAACTAGCGACAGCTTTTTTATACAT 14416 |||||||| ||| | ||||| ||| |||| Sbjct 5663 TCCAAAAAGAAGCCTCGGCTTTCTTACACAT 5693 >seq6919 Length=1122 Score = 87.8 bits (96), Expect = 2e-12 Identities = 77/96 (80%), Gaps = 0/96 (0%) Strand=Plus/Minus Query 13566 GAAATAACGCCCATTTTTTGATATTCACTAACTCTTTTTTCAAAGAAGTTAGTTTTACCT 13625 || ||||| ||||| | ||||| || | ||||| || ||||||||||| || || ||| Sbjct 581 GACATAACTCCCATCCTCTGATACTCGCCCACTCTCTTCTCAAAGAAGTTTGTCTTCCCT 522 Query 13626 TCCAGTGATATATTTTCCATAAAATCAAATGGATTT 13661 ||||| || ||||| ||||| || |||||||||||| Sbjct 521 TCCAGAGAAATATTCTCCATGAAGTCAAATGGATTT 486 >seq64 Length=12756018 Score = 84.2 bits (92), Expect = 2e-11 Identities = 173/254 (68%), Gaps = 5/254 (2%) Strand=Plus/Minus Query 14142 ATGTATGTATCAATAAGTAAGCTATACATTTCAGAGTGTATGTTTTCCATAGCTATCTGA 14201 || || ||||| || || ||||| ||||| || ||||| | || || || ||||| Sbjct 2273448 ATATAGGTATCTATGAGCAAGCTGTACATCTCTGAGTGAACATTCTCGATGAGGATCTGG 2273389 Query 14202 AAACCATAAAAGCATCTAGCTTCCG--ACCATTGTACTTCCGAGTAAAATCTTTCGGCCA 14259 || || || ||||| | || || | ||| || || ||| | || | || ||| Sbjct 2273388 AAGCCGTAGAAGCAGCGGGCCTCAGGGACC--TGCACCTCCTGGCTGAAGCGCTCCACCA 2273331 Query 14260 AATTTTCATTAACTATACCATCACTAGCTGCAAAAA-ATGCCAATATGTTTTTAATAAAG 14318 | |||||||| || || |||||| | |||||||||| | || || | || ||||||| Sbjct 2273330 AGTTTTCATTTACAATTCCATCATTTGCTGCAAAAAGAGGCTAAGACGTGAGAAATAAAG 2273271 Query 14319 TATTGCTCTTCATTGTTGAGTTTTTTCCAATCGGATAAATCCTTAGAAAGATCTACTTCA 14378 |||| ||| || ||||| || | ||| | | | |||||| || ||||| || || Sbjct 2273270 TATTTCTCATCCGGCTTGAGCTTATGCCAGTGAGGCAGATCCTTTGATAGATCAACCTCC 2273211 Query 14379 TCAACTGTCCAAAA 14392 || | ||||| || Sbjct 2273210 TCTGCCGTCCAGAA 2273197 >seq1718 Length=6852 Score = 82.4 bits (90), Expect = 7e-11 Identities = 89/118 (75%), Gaps = 0/118 (0%) Strand=Plus/Plus Query 14257 CCAAATTTTCATTAACTATACCATCACTAGCTGCAAAAAATGCCAATATGTTTTTAATAA 14316 |||| |||||||| || || |||||||| ||||||||||| || || |||| ||||| Sbjct 6234 CCAAGTTTTCATTGACAATTCCATCACTTGCTGCAAAAAAGGCTAAGATGTGAGAAATAA 6293 Query 14317 AGTATTGCTCTTCATTGTTGAGTTTTTTCCAATCGGATAAATCCTTAGAAAGATCTAC 14374 |||||| ||| || ||||| || ||||| | | | |||||| || ||||| || Sbjct 6294 AGTATTTCTCATCCGGCTTGAGCTTGTTCCAGTGAGGCAGATCCTTTGATAGATCAAC 6351 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 479685214259000