Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Octodon_20degus_20[refseq_20GCF_5F000260255.1_202012-05-01] 7,135 sequences; 2,995,889,303 total letters Query= NC_004003.1 Length=149599 Score E Sequences producing significant alignments: (Bits) Value seq64 93.3 4e-14 seq1718 91.5 1e-13 >seq64 Length=12756018 Score = 93.3 bits (102), Expect = 4e-14 Identities = 175/254 (69%), Gaps = 5/254 (2%) Strand=Plus/Minus Query 13930 ATGTATGTATCAATAAGTAAGCTATACATTTCAGAGTGTATGTTTTCTATAGCTATCTGA 13989 || || ||||| || || ||||| ||||| || ||||| | || || || ||||| Sbjct 2273448 ATATAGGTATCTATGAGCAAGCTGTACATCTCTGAGTGAACATTCTCGATGAGGATCTGG 2273389 Query 13990 AAACCATAAAAACATCTAGCTTCTG--ACCATTGTACCTCCGAGTAAAATCTTTCTGCCA 14047 || || || || || | || || | ||| || |||||| | || | || ||| Sbjct 2273388 AAGCCGTAGAAGCAGCGGGCCTCAGGGACC--TGCACCTCCTGGCTGAAGCGCTCCACCA 2273331 Query 14048 AGTTTTCATTAACAATACCATCACTAGCTGCAAAAA-ATGCCAATATGTTTTTAATAAAG 14106 |||||||||| ||||| |||||| | |||||||||| | || || | || ||||||| Sbjct 2273330 AGTTTTCATTTACAATTCCATCATTTGCTGCAAAAAGAGGCTAAGACGTGAGAAATAAAG 2273271 Query 14107 TATTGCTCTTCATTGTTGAGTTTTTTCCAATCGGCTAAATCCTTAGAAAGATCTACTTCA 14166 |||| ||| || ||||| || | ||| | | | |||||| || ||||| || || Sbjct 2273270 TATTTCTCATCCGGCTTGAGCTTATGCCAGTGAGGCAGATCCTTTGATAGATCAACCTCC 2273211 Query 14167 TCAACTGTCCAAAA 14180 || | ||||| || Sbjct 2273210 TCTGCCGTCCAGAA 2273197 >seq1718 Length=6852 Score = 91.5 bits (100), Expect = 1e-13 Identities = 91/118 (77%), Gaps = 0/118 (0%) Strand=Plus/Plus Query 14045 CCAAGTTTTCATTAACAATACCATCACTAGCTGCAAAAAATGCCAATATGTTTTTAATAA 14104 ||||||||||||| ||||| |||||||| ||||||||||| || || |||| ||||| Sbjct 6234 CCAAGTTTTCATTGACAATTCCATCACTTGCTGCAAAAAAGGCTAAGATGTGAGAAATAA 6293 Query 14105 AGTATTGCTCTTCATTGTTGAGTTTTTTCCAATCGGCTAAATCCTTAGAAAGATCTAC 14162 |||||| ||| || ||||| || ||||| | | | |||||| || ||||| || Sbjct 6294 AGTATTTCTCATCCGGCTTGAGCTTGTTCCAGTGAGGCAGATCCTTTGATAGATCAAC 6351 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 478546115861400