Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Octodon_20degus_20[refseq_20GCF_5F000260255.1_202012-05-01] 7,135 sequences; 2,995,889,303 total letters Query= NC_004156.2 Length=231621 Score E Sequences producing significant alignments: (Bits) Value seq74 134 2e-26 seq187 105 1e-17 seq151 98.7 1e-15 seq103 95.1 2e-14 >seq74 Length=13126430 Score = 134 bits (148), Expect = 2e-26 Identities = 320/480 (67%), Gaps = 4/480 (1%) Strand=Plus/Minus Query 70062 AAGAGGGCGATCTGGGGCCAGTGTACGGATTCCAGTGGAGGCACTCGGGCACCAAGTATG 70121 |||| || || ||||| || || || || |||||||||||||| | || | | || Sbjct 9228340 AAGAAGGGGACCTGGGCCCCGTCTATGGCTTCCAGTGGAGGCATTTCGGGGCAGACTACA 9228281 Query 70122 TAGACTGCGAGACAGACTATTCGGGTCAGGGTGTTGATCAATTGCAGACAATCATTGACA 70181 ||| || |||| || |||||||| || ||||| || |||||| | || ||| Sbjct 9228280 AAGATACGGACTCAGATTACTCGGGTCAAGGAGTTGACCAGCTGCAGAACGTGATCAACA 9228221 Query 70182 CTCTCAAGACCAATCCAACAGATAGGAGGATCGTAATGTGCTCATGGAATCCTGCAGATT 70241 | |||| ||| | || | || || |||||| | ||||| | ||||| || |||| Sbjct 9228220 CCATCAAAACCGACCCTAACGACAGAAGGATCATCATGTGTGCCTGGAACCCAAAAGATC 9228161 Query 70242 TGCACCAAATGGCACTACCACCGTGTCACTGTTTGGCTCAGTTTTACTCGTACGATGGCA 70301 | | | ||||| || || || || ||| || ||||| ||| | | || Sbjct 9228160 TCCCTCTGATGGCGCTGCCTCCCTGCCACACCCTGTGCCAGTTCTACGTGGTGAACGGGG 9228101 Query 70302 AATTGTCATGCTTAATGTATCAGAGGAGTGCCGACATGGGCCTCGGTGTACCCTTTAACA 70361 | |||| ||| |||| ||| || | ||||||||||| || |||||||| |||| Sbjct 9228100 AGCTGTCCTGCCAGCTGTACCAGCGGTCAGGGGACATGGGCCTGGGCGTACCCTTCAACA 9228041 Query 70362 TTGCAAGCTATTCTATGTTGACGCACATGATTGCTCACATTACCGGCCTGAAAGCGCACG 70421 | || |||| | || | || ||||| | || ||| | || |||||| |||| || | Sbjct 9228040 TCGCCAGCTGCGCGCTGCTCACCTACATGGTCGCGCACGTCACAGGCCTG-AAGC-CAGG 9227983 Query 70422 AG--TTCGTACACACCATTGGCGACGCTCACGTGTATTTAAATCACATCGAGCCATTAAA 70479 || ||||| ||||| | || ||||| || | || | ||||||||| |||| | || Sbjct 9227982 AGACTTCGTGCACACTTTGGGAGACGCACATATCTACCTGAATCACATCAAGCCGCTGAA 9227923 Query 70480 GGTGCAACTCGAACGGGAGCCGAGACCTTTTCCCAAGCTGGAGTTTGCTCGTAAAGTTGA 70539 | || || |||| || || || ||||| || ||||| | | ||| |||||||| Sbjct 9227922 GACTCAGCTTCAACGAGAACCAAGGCCTTTCCCAAAGCTCAAAATCCTTCGAAAAGTTGA 9227863 >seq187 Length=5094135 Score = 105 bits (116), Expect = 1e-17 Identities = 332/512 (65%), Gaps = 23/512 (4%) Strand=Plus/Minus Query 125028 ATGTACAAAAAGGCTCAGGCCTCCTTTTGGACGGTCGAAGAGGTCGATCTGTCCAAGGAC 125087 |||| || || || |||| || |||||||| | || || |||||||| ||||| ||| Sbjct 5693 ATGTGTAAGAAAGCCGAGGCTTCTTTTTGGACAGCGGAGGAAGTCGATCTTTCCAAAGAC 5634 Query 125088 CTGTACGATTGGGAGACTCGTTTGACTGAAACTGAGCGAGAGTTTATATCGCACATTTTG 125147 | | | ||||| | | | ||||| ||| || | |||||||| |||||| | Sbjct 5633 ATTCAGCACTGGGAAGCCCTGAAGGCTGAA---GAGAGATACTTTATATCACACATTCTA 5577 Query 125148 GCCTTCT----------------TTGCCGGCTCCGATGGAATCGTCAACGACAATCTGTT 125191 | || | || | | | |||||| || |||| || |||||| | Sbjct 5576 ACTTTTTATTATTATATTTTTTTTTCCTGCCAGCGATGGCATAGTCAGTGAGAATCTGGT 5517 Query 125192 GACACGATTCTCTCAAGA-GTTGACCATTCCAGAGGTGTCGTGCTTTTACGGATTCCAAA 125250 | ||||| ||||| ||| | ||| |||| | ||| || ||||| ||||| | Sbjct 5516 GGAGCGATTTAACCAAGAAGTTCAA-ATTACAGAAGCCCGGTGTTTCTACGGCTTCCAGA 5458 Query 125251 TCATGATTGAGAACGTGCACTCGGAAATGTACTCTACACTGATTGACATGTACATTCGCG 125310 | || || ||| |||| |||||||||||| | || || |||| |||||| | | Sbjct 5457 TTGCCATGGAAAACCTGCATTCGGAAATGTACACACTCCTTATGGACACTTACATTAGAG 5398 Query 125311 ATCCGCAACGTAAACACATGCTCTTTAACGCAATCGACACGGTGCCGTCTATACGTAAAA 125370 || | ||| | | | ||||| || || | || || ||| | | | | || | Sbjct 5397 ATTCCCAAGAAAGGGAGTTTCTCTTCAATGCCACTGAGACCGTGGCCTGTGTGAAGAAGA 5338 Query 125371 AGGCTCAATGGGTGATTCGGTGGATCGATGACGACAAGTCTTCGTACGCCGA-CAGACTG 125429 |||| | |||| | | || ||||| | ||| | || | | || | || || || | Sbjct 5337 AGGCAGACTGGGCGTTGCGCTGGATAGGGGACAAAGAGGCCACATATGGAGAACACAC-G 5279 Query 125430 GTGGCATTCGCCGCCGTAGAGGGCATCTTCTTTTCGGGTAGTTTTGCGGCCATCTTTTGG 125489 ||||| || | | | || || || || |||||||| ||| ||||||| ||||| ||| Sbjct 5278 GTGGCCTTTGTCACTGTGGAAGGAATTTTCTTTTCTGGTTCTTTTGCGTTGATCTTCTGG 5219 Query 125490 CTCAAGAAGCGCGGACTCATGCCCGGACTGAC 125521 |||||||| || || |||||||| || || || Sbjct 5218 CTCAAGAAACGGGGCCTCATGCCTGGCCTCAC 5187 >seq151 Length=7174217 Score = 98.7 bits (108), Expect = 1e-15 Identities = 78/94 (83%), Gaps = 0/94 (0%) Strand=Plus/Plus Query 125428 TGGTGGCATTCGCCGCCGTAGAGGGCATCTTCTTTTCGGGTAGTTTTGCGGCCATCTTTT 125487 ||||||| || ||||| || || |||||||||||||| ||| ||||||| | ||||| | Sbjct 1182431 TGGTGGCCTTTGCCGCTGTGGAAGGCATCTTCTTTTCTGGTTCTTTTGCGTCAATCTTCT 1182490 Query 125488 GGCTCAAGAAGCGCGGACTCATGCCCGGACTGAC 125521 |||||||||| || ||||||||||| || || || Sbjct 1182491 GGCTCAAGAAACGAGGACTCATGCCTGGCCTCAC 1182524 >seq103 Length=11468936 Score = 95.1 bits (104), Expect = 2e-14 Identities = 263/403 (65%), Gaps = 18/403 (4%) Strand=Plus/Minus Query 127101 TTTGCGGTAAAAGATGACTCCGGCTCGAGGACCTCTGAGAGTCTTGTGCGTTGTAGTGGT 127160 ||| | ||| ||||| | || || ||| ||||| || |||||||| ||||| ||||| Sbjct 1162010 TTTTCTGTAGAAGATCATGCCAGCACGACAGCCTCTCAGGGTCTTGTGGGTTGTGGTGGT 1161951 Query 127161 CACAATGTCACAATACTCAAAGGGGCCAGGAATGACTTTGCCCGCAATCA--AGCCCGCA 127218 ||| | | || | |||||| ||| ||| | || ||| || || || || | Sbjct 1161950 CACCACATGGCAGTGCTCAAAAGGGGAAGGCACCAC---GCCAGCTGCCACCAGTCCACT 1161894 Query 127219 -ATGTGTGCAATATCGGCCATCAGCAAGGAGCCGGCTGCATCGGCAATCTCTCGGAATCG 127277 ||||| || || || ||||| || | | | | |||| ||||||| | || | Sbjct 1161893 GATGTGCGCCATGTCTGCCATGAGATATGCTCTGTTCTCATCTGCAATCTTCCACAAATG 1161834 Query 127278 TCTATAGTCCAAGCGCCGAGGATAGCAACTGGTGCCGGCTATGATTAGCCTAGGTTTGAA 127337 | |||||||| | ||| ||||||||||| || | | ||| ||| | || | ||| Sbjct 1161833 TGCATAGTCCAGGTTTTGAGAGTAGCAACTGGTTCCATCAAAGATCAGCTTTGGGTGGAA 1161774 Query 127338 TAGATTGGCACTCTCGGCAAGTTTGGCATAGTCGACGAGTCCAGTCTGAGGATCCACCTT 127397 || | |||| |||| | || | | |||||| || | ||||| | |||| ||||| Sbjct 1161773 GAGGTGGGCATTCTCCTCCAGCTGGTCATAGTTGATGTAGCCAGTGTCTGGATATACCTT 1161714 Query 127398 GTACGGCATGCTTTCGAAAAAGAGTGATGTAGCGGACA------------CGTTGCGGAA 127445 || ||||| ||| || |||| |||||||| || | | | ||| Sbjct 1161713 ATAGGGCATAGATTCAAAGAAGATAGATGTAGCAGAGATTTTCTTCTTGTCTGTCATGAA 1161654 Query 127446 TCCGTGCGTCAGGTGGCCTCCGTCGGGCAGATCGAGTCCCATG 127488 || || ||||| |||||| | || ||||| || || |||||| Sbjct 1161653 CCCATGGGTCAGATGGCCTTCATCAGGCAGGTCCAGGCCCATG 1161611 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 740993106782600