Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Octodon_20degus_20[refseq_20GCF_5F000260255.1_202012-05-01] 7,135 sequences; 2,995,889,303 total letters Query= NC_004690.1 Length=113220 Score E Sequences producing significant alignments: (Bits) Value seq32 104 2e-17 seq547 96.9 3e-15 seq269 96.9 3e-15 seq22 91.5 1e-13 seq5 87.8 1e-12 seq70 86.0 5e-12 seq245 82.4 6e-11 seq134 82.4 6e-11 >seq32 Length=19501491 Score = 104 bits (114), Expect = 2e-17 Identities = 143/200 (72%), Gaps = 0/200 (0%) Strand=Plus/Minus Query 15164 AGGGTGGAATCTTTTTGTATGTTGTAATCGCTTAGAATTCTCGCGTCTTCTAATTGTTTG 15223 || ||| | |||||||| || ||||| || ||| | | | || | | ||||||| Sbjct 13545801 AGCGTGAACTCTTTTTGGATTTTGTAGTCAGAGAGAGTCCAACCATCCTACAGTTGTTTG 13545742 Query 15224 CCAGCGTATATCAAACGTTGTTGGTCGTTTGGAATTCCTTCTTTGTCACAAATTTTGCTC 15283 ||||| |||||||||| |||||||| |||| || || || ||||| |||||| Sbjct 13545741 CCAGCAAATATCAAACGCTGTTGGTCAGTTGGGATGCCCTCCTTGTCTTGGATTTTGGCT 13545682 Query 15284 TTTACAATTTCTATGGTATCGCTATTTTCTACATCTAAGGTAATGGTTTTACCTGTCAGA 15343 || ||| | | |||||||| || ||| || || | ||| ||||| || |||||||| Sbjct 13545681 TTGACATTCTTGATGGTATCACTGGGTTCAACCTCGAGGGTGATGGTCTTGCCTGTCAGG 13545622 Query 15344 GTTTTTACAAAAATTTGCAT 15363 || || ||||| || ||||| Sbjct 13545621 GTCTTCACAAAGATCTGCAT 13545602 >seq547 Length=128482 Score = 96.9 bits (106), Expect = 3e-15 Identities = 143/203 (70%), Gaps = 0/203 (0%) Strand=Plus/Minus Query 15161 TGAAGGGTGGAATCTTTTTGTATGTTGTAATCGCTTAGAATTCTCGCGTCTTCTAATTGT 15220 || |||||||| |||||||| ||| |||| || || | | | | || || | |||| Sbjct 109102 TGCAGGGTGGACTCTTTTTGGATGATGTAGTCAGAGAGGGTCCGCCCATCCTCCAGTTGT 109043 Query 15221 TTGCCAGCGTATATCAAACGTTGTTGGTCGTTTGGAATTCCTTCTTTGTCACAAATTTTG 15280 |||||||| |||||| ||| || ||||| ||||| || || ||||| | |||||| Sbjct 109042 TTGCCAGCAAATATCAGACGCTGCTGGTCAGGGGGAATGCCCTCCTTGTCTTAGATTTTG 108983 Query 15281 CTCTTTACAATTTCTATGGTATCGCTATTTTCTACATCTAAGGTAATGGTTTTACCTGTC 15340 || ||| | || ||||| || | || || || | ||| ||||| || || ||| Sbjct 108982 GCTTTGACATTCTCGATGGTGTCACCGGGCTCAACCTCGAGGGTGATGGTCTTGCCCGTC 108923 Query 15341 AGAGTTTTTACAAAAATTTGCAT 15363 || || || ||||| || ||||| Sbjct 108922 AGGGTCTTCACAAAGATCTGCAT 108900 >seq269 Length=2777306 Score = 96.9 bits (106), Expect = 3e-15 Identities = 143/203 (70%), Gaps = 0/203 (0%) Strand=Plus/Plus Query 15161 TGAAGGGTGGAATCTTTTTGTATGTTGTAATCGCTTAGAATTCTCGCGTCTTCTAATTGT 15220 || |||||||| |||||||| |||||||| || || | | | | || || | |||| Sbjct 127438 TGCAGGGTGGACTCTTTTTGGATGTTGTAGTCAGAGAGGGTCCGCCCATCCTCCAGTTGT 127497 Query 15221 TTGCCAGCGTATATCAAACGTTGTTGGTCGTTTGGAATTCCTTCTTTGTCACAAATTTTG 15280 |||||||| |||||| ||| || ||||| || || || || ||||| |||||| Sbjct 127498 TTGCCAGCAAATATCAGACGCTGCTGGTCAGGGGGGATGCCCTCCTTGTCTTGGATTTTG 127557 Query 15281 CTCTTTACAATTTCTATGGTATCGCTATTTTCTACATCTAAGGTAATGGTTTTACCTGTC 15340 || ||| | || ||||| || || || || || | ||| ||||| || || ||| Sbjct 127558 GCTTTGACATTCTCGATGGTGTCACTGGGCTCAACCTCGAGGGTGATGGTCTTGCCCGTC 127617 Query 15341 AGAGTTTTTACAAAAATTTGCAT 15363 || || || ||||| || ||||| Sbjct 127618 AGGGTCTTCACAAAGATCTGCAT 127640 >seq22 Length=23942346 Score = 91.5 bits (100), Expect = 1e-13 Identities = 145/208 (70%), Gaps = 0/208 (0%) Strand=Plus/Minus Query 15161 TGAAGGGTGGAATCTTTTTGTATGTTGTAATCGCTTAGAATTCTCGCGTCTTCTAATTGT 15220 ||||||||||| |||||||| |||||||| || || | | | || | | |||| Sbjct 18044886 TGAAGGGTGGACTCTTTTTGGATGTTGTAGTCAGAGAGGGTCCGACCATCCGCCAGTTGT 18044827 Query 15221 TTGCCAGCGTATATCAAACGTTGTTGGTCGTTTGGAATTCCTTCTTTGTCACAAATTTTG 15280 |||||||| |||||| | | || ||||| ||| || || || ||||| |||||| Sbjct 18044826 TTGCCAGCAAATATCAGATGCTGCTGGTCAGGTGGGATGCCCTCCTTGTCTTGGATTTTG 18044767 Query 15281 CTCTTTACAATTTCTATGGTATCGCTATTTTCTACATCTAAGGTAATGGTTTTACCTGTC 15340 || ||| | || ||||| || || || || | | ||| ||||| || |||||| Sbjct 18044766 GCTTTGACATTCTCGATGGTGTCACTGGGCTCAACCTTGAGGGTGATGGTCTTGCCTGTC 18044707 Query 15341 AGAGTTTTTACAAAAATTTGCATATTTG 15368 || || || || || || ||||||| || Sbjct 18044706 AGGGTCTTCACCAAGATCTGCATATCTG 18044679 >seq5 Length=33943787 Score = 87.8 bits (96), Expect = 1e-12 Identities = 141/203 (69%), Gaps = 0/203 (0%) Strand=Plus/Plus Query 15161 TGAAGGGTGGAATCTTTTTGTATGTTGTAATCGCTTAGAATTCTCGCGTCTTCTAATTGT 15220 || |||||||| ||||||| |||||||| || || | | | | | || | |||| Sbjct 14162908 TGCAGGGTGGACTCTTTTTTGATGTTGTAGTCAGAGAGGGTCCGCCCACCCTCCAGTTGT 14162967 Query 15221 TTGCCAGCGTATATCAAACGTTGTTGGTCGTTTGGAATTCCTTCTTTGTCACAAATTTTG 15280 |||||||| |||||| | | || ||||| ||| || || || ||||| |||||| Sbjct 14162968 TTGCCAGCAAATATCAGATGCTGCTGGTCAGGTGGGATGCCCTCCTTGTCTTGGATTTTG 14163027 Query 15281 CTCTTTACAATTTCTATGGTATCGCTATTTTCTACATCTAAGGTAATGGTTTTACCTGTC 15340 || ||| | || ||||| || || || || || | ||| ||||| || || ||| Sbjct 14163028 GCTTTGACATTCTCGATGGTGTCACTGGGCTCAACCTCAAGGGTGATGGTCTTGCCCGTC 14163087 Query 15341 AGAGTTTTTACAAAAATTTGCAT 15363 || || || ||||| || ||||| Sbjct 14163088 AGGGTCTTCACAAAGATCTGCAT 14163110 >seq70 Length=12294693 Score = 86.0 bits (94), Expect = 5e-12 Identities = 157/230 (68%), Gaps = 0/230 (0%) Strand=Plus/Plus Query 15137 CCACCTCTCAATCTTAAAACTAAATGAAGGGTGGAATCTTTTTGTATGTTGTAATCGCTT 15196 ||||| | | ||| || || | ||||||||| || || ||||| ||||||||||| Sbjct 8652699 CCACCGCGGAGTCTCAACACAAGATGAAGGGTAGACTCCTTTTGAATGTTGTAATCAGGC 8652758 Query 15197 AGAATTCTCGCGTCTTCTAATTGTTTGCCAGCGTATATCAAACGTTGTTGGTCGTTTGGA 15256 | | | | ||||| | ||| || ||||| | |||| | ||| || || ||| Sbjct 8652759 AAGGTCCGTCCATCTTCCAGTTGCTTACCAGCAAAGATCAGCCTTTGCTGATCAGGAGGA 8652818 Query 15257 ATTCCTTCTTTGTCACAAATTTTGCTCTTTACAATTTCTATGGTATCGCTATTTTCTACA 15316 ||||||| || || || ||| ||||||| ||||||| || || | || || Sbjct 8652819 ATTCCTTTCTTATCCTGGATCTTGGCCTTTACATTTTCTATAGTGTCCCAGGGCTCAACC 8652878 Query 15317 TCTAAGGTAATGGTTTTACCTGTCAGAGTTTTTACAAAAATTTGCATATT 15366 || | || ||||| || ||||| || ||||| || ||||| ||||| || Sbjct 8652879 TCGAGCGTGATGGTCTTTCCTGTGAGGGTTTTCACGAAAATCTGCATCTT 8652928 >seq245 Length=3094877 Score = 82.4 bits (90), Expect = 6e-11 Identities = 145/210 (69%), Gaps = 1/210 (0%) Strand=Plus/Minus Query 15155 ACTAAATGAAGGGTGGAATCTTTTTGTATGTTGTAATCGCTTAGAATTCTCGCGTCTTCT 15214 || || || |||||||| |||||||| |||||| | || || | | | || || Sbjct 186901 ACCAAGTGCAGGGTGGACTCTTTTTGGATGTTGCAGTCAGAGAGGGTCCGACCATCCTCC 186842 Query 15215 AATTGTTTGCCAGCGTATATCAAACGTTGTTGGTCGT-TTGGAATTCCTTCTTTGTCACA 15273 | |||||||||||| || ||| | | || ||||| | |||| || || || ||||| Sbjct 186841 AGTTGTTTGCCAGCAAATGTCAGATGCTGCTGGTCATATTGGGATGCCCTCCTTGTCTTG 186782 Query 15274 AATTTTGCTCTTTACAATTTCTATGGTATCGCTATTTTCTACATCTAAGGTAATGGTTTT 15333 |||||| || ||| || ||||| || || || || || | ||| ||||| || Sbjct 186781 GATTTTGGCTTTGACATCCTCGATGGTGTCACTGGGCTCGACCTCGAGGGTGATGGTCTT 186722 Query 15334 ACCTGTCAGAGTTTTTACAAAAATTTGCAT 15363 |||||||| || || ||||| || | ||| Sbjct 186721 GCCTGTCAGTGTCTTCACAAAGATCTACAT 186692 >seq134 Length=8026581 Score = 82.4 bits (90), Expect = 6e-11 Identities = 134/193 (69%), Gaps = 0/193 (0%) Strand=Plus/Minus Query 15161 TGAAGGGTGGAATCTTTTTGTATGTTGTAATCGCTTAGAATTCTCGCGTCTTCTAATTGT 15220 || ||||||| |||||||| |||||||| || ||| | | | || || |||||| Sbjct 4604691 TGCAGGGTGGTCTCTTTTTGGATGTTGTAGTCAGAGAGAGTCCGACCATCCTCCAATTGT 4604632 Query 15221 TTGCCAGCGTATATCAAACGTTGTTGGTCGTTTGGAATTCCTTCTTTGTCACAAATTTTG 15280 |||||||| |||||| || || ||||| ||| || | || ||||| |||||| Sbjct 4604631 TTGCCAGCAAATATCAGACACTGCTGGTCAGGTGGGATGCTCTCCTTGTCTTGGATTTTG 4604572 Query 15281 CTCTTTACAATTTCTATGGTATCGCTATTTTCTACATCTAAGGTAATGGTTTTACCTGTC 15340 || ||| | || ||||| || || || || | | ||| || ||||| |||||| Sbjct 4604571 GCTTTGACATTCTCGATGGTGTCACTGAGCTCAACCTTAAGGGTGATCGTTTTGCCTGTC 4604512 Query 15341 AGAGTTTTTACAA 15353 || || || |||| Sbjct 4604511 AGGGTATTCACAA 4604499 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 362147705689035