Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Octodon_20degus_20[refseq_20GCF_5F000260255.1_202012-05-01] 7,135 sequences; 2,995,889,303 total letters Query= NC_005038.1 Length=99657 Score E Sequences producing significant alignments: (Bits) Value seq203 98.7 6e-16 seq163 98.7 6e-16 seq164 95.1 8e-15 seq79 95.1 8e-15 seq29 95.1 8e-15 seq21 89.7 3e-13 seq89 87.8 1e-12 seq76 86.0 4e-12 seq19 86.0 4e-12 seq344 84.2 1e-11 >seq203 Length=4329578 Score = 98.7 bits (108), Expect = 6e-16 Identities = 154/219 (70%), Gaps = 6/219 (3%) Strand=Plus/Minus Query 33157 CAACACCAAATGCAATGTCGACTCTTTTTGTATATTGTAATCAGACAAATTGAGTTGGTC 33216 |||||| | ||| | || ||||| ||||| || |||||||||||||| | || || Sbjct 2169449 CAACACAAGATGAAGAGTAGACTCCTTTTGAATGTTGTAATCAGACAAGGTACGTCCATC 2169390 Query 33217 ATCCAATTGCTTTCCACTAAATATTAAACGTTGCTGGTCCGTGGGTATGCCTTCTTTTTC 33276 |||| ||||| ||| ||| || | | |||||| || | || || ||||| || || Sbjct 2169389 TTCCAGCTGCTTACCAGCAAAGATCAGCCTTTGCTGATCAGGAGGAATTCCTTCCTTATC 2169330 Query 33277 ---GCTAATCGCCTGTTTTACTGTTTGAATCGTGTCGTTGGGTTGAACGTCCAGAGTTAT 33333 | | | ||| ||||| ||| || ||||| ||||| ||| || || || || Sbjct 2169329 CTGGATCTTGGCC---TTTACATTTTCTATAGTGTCCGAGGGTTCAACCTCGAGCGTGAT 2169273 Query 33334 CGTTTTTCCCGTAAGAGTTTTTACGAAAATTTGCATGTT 33372 || || |||||||| ||||| |||||||| ||||| || Sbjct 2169272 GGTCTTCCCCGTAAGGGTTTTCACGAAAATCTGCATCTT 2169234 >seq163 Length=6182668 Score = 98.7 bits (108), Expect = 6e-16 Identities = 152/216 (70%), Gaps = 7/216 (3%) Strand=Plus/Plus Query 33157 CAACACCAAATGCAATGTCGACTCTTTTTGTATATTGTAATCAGACAAATTGAGTTGGTC 33216 |||||| | ||| | || ||||| ||||| || |||||||||||||| | || || Sbjct 5399910 CAACACAAGATGAAGAGTAGACTCCTTTTGAATGTTGTAATCAGACAAGGTACGTCCATC 5399969 Query 33217 ATCCAATTGCTTTCCACTAAATATTAAACGTTGCTGGTCCGTGGGTATGCCTTCTTTTTC 33276 |||| ||||| ||| ||| || | | |||||| || | || || ||||| || || Sbjct 5399970 TTCCAGCTGCTTACCAGCAAAGATCAGCCTTTGCTGATCAGGAGGAATTCCTTCCTTATC 5400029 Query 33277 GCTAATCGCCTGTTTTACTGTTTGAATCGTGTCGTTGGGTTGAACGTCCAGAGTTATCGT 33336 | ||| ||||| ||| || ||||| ||||| ||| || || || || || Sbjct 5400030 ----CTGGCC---TTTACATTTTCTATAGTGTCCGAGGGTTCAACCTCGAGCGTGATGGT 5400082 Query 33337 TTTTCCCGTAAGAGTTTTTACGAAAATTTGCATGTT 33372 || |||||||| ||||| |||||||| ||||| || Sbjct 5400083 CTTCCCCGTAAGGGTTTTCACGAAAATCTGCATCTT 5400118 Score = 82.4 bits (90), Expect = 5e-11 Identities = 151/218 (69%), Gaps = 5/218 (2%) Strand=Plus/Plus Query 33157 CAACACCAAATGCAATGTCGACTCTTTTTGTATATTGTAATCAGACAAATTGAGTTGGTC 33216 |||||| | ||| | || ||||| ||||| || ||||||||||||||| || || || Sbjct 896718 CAACACAAGATGAAGAGTAGACTCCTTTTGGATGTTGTAATCAGACAAAGTGCGTCCATC 896777 Query 33217 ATCCAATTGCTTTCCACTAAATATTAAACGTTGCTGGTCCGTGGGTATGCCTTCTTTTTC 33276 |||| | ||| ||| ||| | | | |||||| || | || || ||| | || || Sbjct 896778 TTCCAGTCACTTACCAGCAAAGAGCAGCCTTTGCTGATCAGGAGGAATTCCTGCCTTATC 896837 Query 33277 GCTAATC--GCCTGTTTTACTGTTTGAATCGTGTCGTTGGGTTGAACGTCCAGAGTTATC 33334 ||| |||| || || | | || | ||||| ||||| ||| || || || || Sbjct 896838 CTGGATCTTGCCT-TTATATTTTCTG--TAGTGTCCGAGGGTTCAACCTCGAGTGTGATG 896894 Query 33335 GTTTTTCCCGTAAGAGTTTTTACGAAAATTTGCATGTT 33372 || || || | ||| ||||| |||||||| ||||| || Sbjct 896895 GTCTTCCCTGAAAGGGTTTTCACGAAAATCTGCATCTT 896932 >seq164 Length=5921534 Score = 95.1 bits (104), Expect = 8e-15 Identities = 153/219 (70%), Gaps = 6/219 (3%) Strand=Plus/Minus Query 33157 CAACACCAAATGCAATGTCGACTCTTTTTGTATATTGTAATCAGACAAATTGAGTTGGTC 33216 |||||| | ||| | || ||||| ||||| || |||||||||||||| | || || Sbjct 5181237 CAACACAAGATGAAGAGTAGACTCCTTTTGAATGTTGTAATCAGACAAGGTACGTCCATC 5181178 Query 33217 ATCCAATTGCTTTCCACTAAATATTAAACGTTGCTGGTCCGTGGGTATGCCTTCTTTTTC 33276 |||| ||||| ||| ||| || | | |||||| || | || || ||||| || || Sbjct 5181177 TTCCAGCTGCTTACCAGCAAAGATCAGCCTTTGCTGATCAGGAGGAATTCCTTCCTTATC 5181118 Query 33277 ---GCTAATCGCCTGTTTTACTGTTTGAATCGTGTCGTTGGGTTGAACGTCCAGAGTTAT 33333 | | | ||| ||||| ||| || ||||| ||||| ||| || || || || Sbjct 5181117 CTGGATCTTGGCC---TTTACATTTTCTATAGTGTCCGAGGGTTCAACCTCGAGCGTGAT 5181061 Query 33334 CGTTTTTCCCGTAAGAGTTTTTACGAAAATTTGCATGTT 33372 || || || ||||| ||||| |||||||| ||||| || Sbjct 5181060 GGTCTTCCCAGTAAGGGTTTTCACGAAAATCTGCATCTT 5181022 >seq79 Length=11620627 Score = 95.1 bits (104), Expect = 8e-15 Identities = 153/219 (70%), Gaps = 6/219 (3%) Strand=Plus/Plus Query 33157 CAACACCAAATGCAATGTCGACTCTTTTTGTATATTGTAATCAGACAAATTGAGTTGGTC 33216 |||||| | ||| | || ||||| ||||| || |||||||||||||| | || || Sbjct 6673225 CAACACAAGATGAAGGGTAGACTCCTTTTGAATGTTGTAATCAGACAAGGTACGTCCATC 6673284 Query 33217 ATCCAATTGCTTTCCACTAAATATTAAACGTTGCTGGTCCGTGGGTATGCCTTCTTTTTC 33276 ||| |||||| |||| | | || | | |||||| || | || || ||||| || || Sbjct 6673285 TTCCCGTTGCTTACCACCACAGATCAGCCTTTGCTGATCAGGAGGAATTCCTTCCTTATC 6673344 Query 33277 ---GCTAATCGCCTGTTTTACTGTTTGAATCGTGTCGTTGGGTTGAACGTCCAGAGTTAT 33333 | | | ||| ||||| ||| || ||||| ||| ||||| ||||| || || Sbjct 6673345 CTGGATCTTGGCC---TTTACATTTTCTATAGTGTCTGAGGGCTGAACCTCCAGTGTGAT 6673401 Query 33334 CGTTTTTCCCGTAAGAGTTTTTACGAAAATTTGCATGTT 33372 || || |||||||| ||||| || ||||| | ||| || Sbjct 6673402 GGTCTTCCCCGTAAGGGTTTTCACAAAAATCTCCATCTT 6673440 Score = 87.8 bits (96), Expect = 1e-12 Identities = 161/235 (69%), Gaps = 6/235 (3%) Strand=Plus/Minus Query 33141 CACCGCCTCTTAACCGCAACACCAAATGCAATGTCGACTCTTTTTGTATATTGTAATCAG 33200 |||| ||||| | || | ||||| ||||| || ||||| || || || |||||||||| Sbjct 4060266 CACCTCCTCTCAGGCGGAGCACCAGATGCAGGGTGGACTCCTTCTGGATGTTGTAATCAG 4060207 Query 33201 ACAAATTGAGTTGGTCATCCAATTGCTTTCCACTAAATATTAAACGTTGCTGGTCCGTGG 33260 | | || | || |||| ||||| ||| ||| || | | |||||||| | || Sbjct 4060206 AGAGGGTGCGCCCATCTTCCAGCTGCTTGCCAGCAAAGATCAGCCTCTGCTGGTCAGGGG 4060147 Query 33261 GTATGCCTTCTTTTTC---GCTAATCGCCTGTTTTACTGTTTGAATCGTGTCGTTGGGTT 33317 |||||||||| || || | | | ||| || || | | ||| |||||| |||| | Sbjct 4060146 GTATGCCTTCCTTGTCCTGGATCTTGGCC---TTGACGTTCTCAATGGTGTCGCTGGGCT 4060090 Query 33318 GAACGTCCAGAGTTATCGTTTTTCCCGTAAGAGTTTTTACGAAAATTTGCATGTT 33372 || || || || || || || || || || || || ||||| || ||||| || Sbjct 4060089 CCACCTCGAGGGTGATGGTCTTGCCAGTGAGGGTCTTCACGAAGATCTGCATTTT 4060035 >seq29 Length=19401444 Score = 95.1 bits (104), Expect = 8e-15 Identities = 153/219 (70%), Gaps = 6/219 (3%) Strand=Plus/Minus Query 33157 CAACACCAAATGCAATGTCGACTCTTTTTGTATATTGTAATCAGACAAATTGAGTTGGTC 33216 |||||| | || | || ||||| ||||| || |||||||||||||| | || || Sbjct 6047436 CAACACAAGATTAAGAGTAGACTCCTTTTGAATGTTGTAATCAGACAAGGTACGTCCATC 6047377 Query 33217 ATCCAATTGCTTTCCACTAAATATTAAACGTTGCTGGTCCGTGGGTATGCCTTCTTTTTC 33276 |||| ||||| ||| ||| || | | |||||| || | || || ||||| || || Sbjct 6047376 TTCCAGCTGCTTACCAGCAAAGATCAGCCTTTGCTGATCAGAAGGAATTCCTTCCTTATC 6047317 Query 33277 ---GCTAATCGCCTGTTTTACTGTTTGAATCGTGTCGTTGGGTTGAACGTCCAGAGTTAT 33333 | | | ||| ||||| ||| || ||||| ||||| ||| || || || || Sbjct 6047316 CTGGATCTTGGCC---TTTACATTTTCTATAGTGTCCGAGGGTTCAACCTCGAGCGTGAT 6047260 Query 33334 CGTTTTTCCCGTAAGAGTTTTTACGAAAATTTGCATGTT 33372 || || |||||||| ||||| |||||||| ||||| || Sbjct 6047259 GGTCTTCCCCGTAAGGGTTTTCACGAAAATCTGCATCTT 6047221 >seq21 Length=22121357 Score = 89.7 bits (98), Expect = 3e-13 Identities = 152/219 (69%), Gaps = 6/219 (3%) Strand=Plus/Minus Query 33157 CAACACCAAATGCAATGTCGACTCTTTTTGTATATTGTAATCAGACAAATTGAGTTGGTC 33216 ||||| | ||| | || ||||| ||||| || |||||||||||||| | || || Sbjct 13639763 CAACATAAGATGAAGAGTAGACTCCTTTTGAATGTTGTAATCAGACAAGGTACGTCCATC 13639704 Query 33217 ATCCAATTGCTTTCCACTAAATATTAAACGTTGCTGGTCCGTGGGTATGCCTTCTTTTTC 33276 |||| |||||| ||| ||| || || | |||||| || | | || ||||| || || Sbjct 13639703 TTCCAGTTGCTTACCAGCAAAGATCAACCTTTGCTGATCAGGAAGAATTCCTTCCTTATC 13639644 Query 33277 ---GCTAATCGCCTGTTTTACTGTTTGAATCGTGTCGTTGGGTTGAACGTCCAGAGTTAT 33333 | | | ||| ||||| ||| | ||||| ||||| ||| || || || || Sbjct 13639643 CTGGATCTTGGCC---TTTACATTTTCTGTAGTGTCCGAGGGTTCAACCTCGAGCGTGAT 13639587 Query 33334 CGTTTTTCCCGTAAGAGTTTTTACGAAAATTTGCATGTT 33372 || || |||||||| ||||| | |||||| ||||| || Sbjct 13639586 GGTCTTCCCCGTAAGGGTTTTCATGAAAATCTGCATCTT 13639548 Score = 86.0 bits (94), Expect = 4e-12 Identities = 151/219 (69%), Gaps = 6/219 (3%) Strand=Plus/Minus Query 33157 CAACACCAAATGCAATGTCGACTCTTTTTGTATATTGTAATCAGACAAATTGAGTTGGTC 33216 |||||| ||| | || ||||| ||||| || |||||||||||||| | || || Sbjct 9496177 CAACACACGATGAAGGGTAGACTCCTTTTGAATGTTGTAATCAGACAAGGTACGTCCATC 9496118 Query 33217 ATCCAATTGCTTTCCACTAAATATTAAACGTTGCTGGTCCGTGGGTATGCCTTCTTTTTC 33276 |||| |||||| ||| ||| || | | |||||| || | || || ||||| || || Sbjct 9496117 TTCCAGTTGCTTACCAGCAAAGATCAGCCTTTGCTGATCAGGAGGAATTCCTTCCTTATC 9496058 Query 33277 ---GCTAATCGCCTGTTTTACTGTTTGAATCGTGTCGTTGGGTTGAACGTCCAGAGTTAT 33333 | | | ||| ||||| ||| || ||||| ||| | ||| || || | || Sbjct 9496057 CTGGATCTTGGCC---TTTACATTTTCTATAGTGTCCGAGGGCTCAACCTCAAGCATGAT 9496001 Query 33334 CGTTTTTCCCGTAAGAGTTTTTACGAAAATTTGCATGTT 33372 || || ||||||| ||||| |||||||| ||||| || Sbjct 9496000 GGTCTTCCCCGTAAAGGTTTTCACGAAAATCTGCATCTT 9495962 >seq89 Length=10879206 Score = 87.8 bits (96), Expect = 1e-12 Identities = 149/216 (69%), Gaps = 0/216 (0%) Strand=Plus/Minus Query 33157 CAACACCAAATGCAATGTCGACTCTTTTTGTATATTGTAATCAGACAAATTGAGTTGGTC 33216 |||||| | ||| | || ||||| ||||| | |||||||||||||| | || || Sbjct 5400974 CAACACAAGATGAAGGGTAGACTCCTTTTGAACGTTGTAATCAGACAAGGTACGTCCATC 5400915 Query 33217 ATCCAATTGCTTTCCACTAAATATTAAACGTTGCTGGTCCGTGGGTATGCCTTCTTTTTC 33276 |||| |||||| ||| ||| || | | ||||| || | || || ||||| || || Sbjct 5400914 CTCCAGTTGCTTACCAGCAAAGATCAGCCTGTGCTGATCAGGAGGAATTCCTTCCTTGTC 5400855 Query 33277 GCTAATCGCCTGTTTTACTGTTTGAATCGTGTCGTTGGGTTGAACGTCCAGAGTTATCGT 33336 ||| ||||| ||| || ||||| ||||| ||| || || || || || Sbjct 5400854 CTGGATCTTGGTCTTTACATTTTCTATAGTGTCCAAGGGTTCAACCTCGAGCGTGATGGT 5400795 Query 33337 TTTTCCCGTAAGAGTTTTTACGAAAATTTGCATGTT 33372 |||| |||||| ||||| | |||||| ||||| || Sbjct 5400794 CTTTCTCGTAAGGGTTTTCATGAAAATCTGCATCTT 5400759 >seq76 Length=11650222 Score = 86.0 bits (94), Expect = 4e-12 Identities = 159/232 (69%), Gaps = 6/232 (3%) Strand=Plus/Minus Query 33141 CACCGCCTCTTAACCGCAACACCAAATGCAATGTCGACTCTTTTTGTATATTGTAATCAG 33200 |||| ||||| | || | ||||| ||||| || ||||| || || || |||||||||| Sbjct 5166935 CACCTCCTCTCAGGCGGAGCACCAGATGCAGAGTGGACTCCTTCTGGATGTTGTAATCAG 5166876 Query 33201 ACAAATTGAGTTGGTCATCCAATTGCTTTCCACTAAATATTAAACGTTGCTGGTCCGTGG 33260 | | || | || |||| ||||| ||| ||| || | | |||||||| | || Sbjct 5166875 AGAGGGTGCGCCCATCTTCCAGCTGCTTGCCAGCAAAGATCAGCCTCTGCTGGTCAGGGG 5166816 Query 33261 GTATGCCTTCTTT---TTCGCTAATCGCCTGTTTTACTGTTTGAATCGTGTCGTTGGGTT 33317 | |||||||| || || | | | ||| || || | | ||| |||||| |||| | Sbjct 5166815 GGATGCCTTCCTTGTCTTGGATCTTAGCC---TTGACGTTCTCAATGGTGTCGCTGGGCT 5166759 Query 33318 GAACGTCCAGAGTTATCGTTTTTCCCGTAAGAGTTTTTACGAAAATTTGCAT 33369 || ||||| || || || || || || || || || ||||| || ||||| Sbjct 5166758 CCACCTCCAGGGTGATGGTCTTGCCAGTGAGGGTCTTCACGAAGATCTGCAT 5166707 >seq19 Length=25147210 Score = 86.0 bits (94), Expect = 4e-12 Identities = 151/219 (69%), Gaps = 6/219 (3%) Strand=Plus/Minus Query 33157 CAACACCAAATGCAATGTCGACTCTTTTTGTATATTGTAATCAGACAAATTGAGTTGGTC 33216 |||||| | ||| | || ||||| ||||| || |||||||||||||| | || || Sbjct 17501606 CAACACAAGATGAAGAGTAGACTCCTTTTGAATGTTGTAATCAGACAAGGTCCGTCCATC 17501547 Query 33217 ATCCAATTGCTTTCCACTAAATATTAAACGTTGCTGGTCCGTGGGTATGCCTTCTTTTTC 33276 |||| |||||| ||| ||| || | | || ||| || | || || ||||| || || Sbjct 17501546 TTCCAGTTGCTTACCAGCAAAGATCAGCCTTTACTGATCAGGAGGAATTCCTTCCTTATC 17501487 Query 33277 ---GCTAATCGCCTGTTTTACTGTTTGAATCGTGTCGTTGGGTTGAACGTCCAGAGTTAT 33333 | | | ||||| ||| ||| || ||||| ||||| ||| || || | || Sbjct 17501486 CTGGATCTTGGCCTG---TACATTTTCTATAGTGTCCAAGGGTTCAACCTCGAGCATGAT 17501430 Query 33334 CGTTTTTCCCGTAAGAGTTTTTACGAAAATTTGCATGTT 33372 || || ||| |||| ||||| || ||||| ||||| || Sbjct 17501429 GGTCTTCCCCATAAGGGTTTTCACAAAAATCTGCATCTT 17501391 >seq344 Length=1057235 Score = 84.2 bits (92), Expect = 1e-11 Identities = 151/217 (70%), Gaps = 3/217 (1%) Strand=Plus/Minus Query 33157 CAACACCAAATGCAATGTCGACTCTTTTTGTATATTGTAATCAGACAAATTGAGTTGGTC 33216 |||||| | ||| | || ||||| || || || |||||||||||||| | || || Sbjct 729036 CAACACAAGATGAAGGGTAGACTCCTTGTGAATGTTGTAATCAGACAAGGTACGTCCATC 728977 Query 33217 ATCCAATTGCTTTCCACTAAATATTAAACGTTGCTGGTCCGTGGGTATGCCTTCTTTTTC 33276 |||| |||||| ||| ||| || | | |||||| || | || || ||||| || || Sbjct 728976 TTCCAGTTGCTTACCAGCAAAGATCAGCCTTTGCTGATCAGGAGGAATTCCTTCCTTATC 728917 Query 33277 GCTA-ATCGCCTGTTTTACTGTTTGAATCGTGTCGTTGGGTTGAACGTCCAGAGTTATCG 33335 ||| ||| | ||||| ||| || ||||| ||||| ||| || | || || | Sbjct 728916 -CTAGATCTCGGCCTTTACATTTTCTATAGTGTCCAAGGGTTCAACCTCGCGTGTGATGG 728858 Query 33336 TTTTTCCCGTAAGAGTTTTTACGAAAATTTGCATGTT 33372 | || ||| | || ||||| || ||||| ||||| || Sbjct 728857 TCTTCCCCAT-AGGGTTTTCACAAAAATCTGCATCTT 728822 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 318749879797230