Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Octodon_20degus_20[refseq_20GCF_5F000260255.1_202012-05-01] 7,135 sequences; 2,995,889,303 total letters Query= NC_005068.1 Length=110907 Score E Sequences producing significant alignments: (Bits) Value seq547 84.2 2e-11 >seq547 Length=128482 Score = 84.2 bits (92), Expect = 2e-11 Identities = 117/164 (71%), Gaps = 0/164 (0%) Strand=Plus/Minus Query 43961 CGCTCATCGTCCAATTGTTTTCCTGCAAATATCAACCGTTGCTGGTCCTGAGGTACACCT 44020 ||| |||| |||| |||||| || |||||||||| || |||||||| | || | || Sbjct 109060 CGCCCATCCTCCAGTTGTTTGCCAGCAAATATCAGACGCTGCTGGTCAGGGGGAATGCCC 109001 Query 44021 TCTTTATCTGAAATTTTTTGTTTGACCATAGCAACAGTATCTGCCGGCTCCACATCGACC 44080 || || ||| | ||||| |||||| | | | || || | ||||| || |||| Sbjct 109000 TCCTTGTCTTAGATTTTGGCTTTGACATTCTCGATGGTGTCACCGGGCTCAACCTCGAGG 108941 Query 44081 GTAATTGTTTTACCGGTTAAAGTCTTCACAAATATTTGCATGTC 44124 || || || || || || | ||||||||||| || |||||||| Sbjct 108940 GTGATGGTCTTGCCCGTCAGGGTCTTCACAAAGATCTGCATGTC 108897 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 354746749315980