Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Octodon_20degus_20[refseq_20GCF_5F000260255.1_202012-05-01] 7,135 sequences; 2,995,889,303 total letters Query= NC_005336.1 Length=139962 Score E Sequences producing significant alignments: (Bits) Value seq131 122 8e-23 seq299 107 2e-18 seq102 107 2e-18 seq223 86.0 6e-12 seq52 84.2 2e-11 >seq131 Length=8239869 Score = 122 bits (134), Expect = 8e-23 Identities = 118/152 (78%), Gaps = 0/152 (0%) Strand=Plus/Minus Query 128874 GGCTACCTCGGGTGCCAGGCACTCTCTGAGATGATACAGTTTTACTTGGAAGAGGTGATG 128933 || ||||| || ||||| || | || |||||||| ||||||||| ||| |||||||||| Sbjct 2014435 GGTTACCTGGGTTGCCAAGCCTTGTCAGAGATGATCCAGTTTTACCTGGTAGAGGTGATG 2014376 Query 128934 CCGCAGGCGGAAAATCACGGGCCGGACATCAAAGAGCACGTTAACTCGCTGGGAGAAAAG 128993 || |||| || || |||| || |||||||| ||||| || ||||| ||||| || ||| Sbjct 2014375 CCCAAGGCAGAGAACCACGACCCAGACATCAAGGAGCATGTGAACTCTCTGGGGGAGAAG 2014316 Query 128994 CTCAAAACGCTGCGTCTTCGACTGCGTCGCTG 129025 || || || || | ||||| ||| | ||||| Sbjct 2014315 CTGAAGACCCTCAGGCTTCGGCTGAGACGCTG 2014284 Score = 82.4 bits (90), Expect = 7e-11 Identities = 74/91 (81%), Gaps = 3/91 (3%) Strand=Plus/Minus Query 129092 GCTGCAGGAACGAGGCGTTTACAAGGCCATGAGCGAGTTCGACATATTCATCAACTACAT 129151 ||| || ||| ||| || ||||| |||||||| ||||| ||||| ||||||||||| || Sbjct 2012234 GCTCCAAGAAAAAGGTGTCTACAAAGCCATGAGTGAGTTTGACATCTTCATCAACTATAT 2012175 Query 129152 AGAATCATACATGACTACT--AAATAATAAA 129180 |||| | |||||||| ||| |||||| ||| Sbjct 2012174 AGAAGCCTACATGAC-ACTGAAAATAACAAA 2012145 >seq299 Length=1754668 Score = 107 bits (118), Expect = 2e-18 Identities = 145/197 (74%), Gaps = 4/197 (2%) Strand=Plus/Minus Query 5304 CTGGGTGCGATATGCGTTCGCATATTAGCTGAGCTATCCTGTCTCCCTTCTTAACCTCAA 5363 |||||| | || || || || || ||||| || || | || |||||||| || |||| Sbjct 1493556 CTGGGTAGTAGATCCGCTCACAAATAAGCTGGGCGATGCGATCGCCCTTCTTCACTTCAA 1493497 Query 5364 AGTCGCTGTTT-CCGAAGTTAAACAGCACCACCCCGACATTGCCTCGGTAGTCTTCGTCG 5422 | | || ||| ||||||||||| ||| | || || |||| |||| ||||||||| || Sbjct 1493496 ACTT-CTCTTTGCCGAAGTTAAAAAGCGCGACACCAACATCTCCTCTGTAGTCTTCATCT 1493438 Query 5423 ATAACGCCAGCGCCCACGTCGATAAAGTGTTTGACCGCAAGGCCGGAACGTGGTGCTA-T 5481 || || ||||| || || || || ||||||||| | || | ||| || ||||| || | | Sbjct 1493437 ATGACCCCAGCTCCGACATCTATGAAGTGTTTGGCAGCCAAGCCCGAGCGTGGAGCCACT 1493378 Query 5482 GCGTCCGTAGCAACCAG 5498 | | || ||||| |||| Sbjct 1493377 GTG-CCATAGCACCCAG 1493362 >seq102 Length=10499097 Score = 107 bits (118), Expect = 2e-18 Identities = 167/231 (72%), Gaps = 6/231 (3%) Strand=Plus/Plus Query 5270 TCGGTGTCGTCCAAGCGGTTAACCTCTTGAACTGCTGGGTGCGATATGCGTTCGCATATT 5329 || ||||| ||||||| || || || | | |||||| | || || || || || Sbjct 2804963 TCCGTGTCATCCAAGCCGTGCACTTCCTCTATCTCTGGGTAGTAGAT-CGCTCACAAATA 2805021 Query 5330 AGCTGAGCTATCCTGTCTCCCTTCTTAACCTCAAAGTCGCTGTTT-CCGAAGTTAAACAG 5388 ||||| || || | ||| ||||| || || ||||| | || ||| || ||||||||||| Sbjct 2805022 AGCTGGGCGATGCGGTCGCCCTTTTTCACTTCAAACTT-CTCTTTGCCAAAGTTAAACAG 2805080 Query 5389 CACCACCCCGACATTGCCTCGGTAGTCTTCGTCGATAACGCCAGCGCCCACGTCGATAAA 5448 ||| || || || || |||| ||| ||||| ||||| || ||||| || || || || || Sbjct 2805081 CACAACACCAACGTTTCCTCTGTAATCTTCATCGATGACCCCAGCTCCGACATCTATGAA 2805140 Query 5449 GTGTTTGACCGCAAGGCCGGAACGTGGTGCTA-TGCGTCCGTAGCAACCAG 5498 ||||||| | || | ||| || | ||| || | || | || ||||| |||| Sbjct 2805141 GTGTTTGGCAGCCAAGCCCGAGC-TGGAGCCACTGTG-CCATAGCACCCAG 2805189 >seq223 Length=3887406 Score = 86.0 bits (94), Expect = 6e-12 Identities = 114/156 (73%), Gaps = 2/156 (1%) Strand=Plus/Plus Query 5344 GTCTCCCTTCTTAACCTCAAAGTCGCTGTTT-CCGAAGTTAAACAGCACCACCCCGACAT 5402 ||| ||||| || || ||||| | || | | || |||||||||||||| | || |||| Sbjct 1312726 GTCGCCCTTTTTCACTTCAAACTT-CTCTCTGCCAAAGTTAAACAGCACGGCACCAACAT 1312784 Query 5403 TGCCTCGGTAGTCTTCGTCGATAACGCCAGCGCCCACGTCGATAAAGTGTTTGACCGCAA 5462 | |||| ||| ||||| || || || ||||| || || || || ||||||| | | || | Sbjct 1312785 TTCCTCTGTAATCTTCATCTATGACCCCAGCTCCGACATCTATGAAGTGTTCGGCAGCCA 1312844 Query 5463 GGCCGGAACGTGGTGCTATGCGTCCGTAGCAACCAG 5498 ||| || |||| || || | || ||||| |||| Sbjct 1312845 AGCCCGAGAGTGGAGCCATTCTGCCATAGCACCCAG 1312880 >seq52 Length=13542964 Score = 84.2 bits (92), Expect = 2e-11 Identities = 101/135 (75%), Gaps = 2/135 (1%) Strand=Plus/Minus Query 5321 TCGCATATTAGCTGAGCTATCCTGTCTCCCTTCTTAACCTCAAAGTCGCTGTTT-CCGAA 5379 || || || ||||| || || | ||| |||||||| || ||||| | || ||| || || Sbjct 1181155 TCACAGATAAGCTGGGCGATGCGGTCGCCCTTCTTCACTTCAAACTT-CTCTTTGCCAAA 1181097 Query 5380 GTTAAACAGCACCACCCCGACATTGCCTCGGTAGTCTTCGTCGATAACGCCAGCGCCCAC 5439 |||||||||| | || || |||| |||| ||| ||||| | ||| || ||||| || || Sbjct 1181096 GTTAAACAGCGCGACACCAGCATTTCCTCTGTAATCTTCATTGATGACCCCAGCTCCGAC 1181037 Query 5440 GTCGATAAAGTGTTT 5454 || | |||||||| Sbjct 1181036 ATCTGTGAAGTGTTT 1181022 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 447710466261200