Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Octodon_20degus_20[refseq_20GCF_5F000260255.1_202012-05-01] 7,135 sequences; 2,995,889,303 total letters Query= NC_005337.1 Length=134431 Score E Sequences producing significant alignments: (Bits) Value seq299 138 1e-27 seq131 114 1e-20 >seq299 Length=1754668 Score = 138 bits (152), Expect = 1e-27 Identities = 203/285 (71%), Gaps = 2/285 (1%) Strand=Plus/Minus Query 5504 CCCGTGGACCCGAATCCGCCTGCGCCTCTTTCCGTATCGTCCAGGCACGCCACCTCTTCC 5563 || ||||| || || || || | || ||||||||||| |||| || | ||| || || Sbjct 1493620 CCAGTGGATCCAAAGCCTCCAGAACCCCTTTCCGTATCATCCAAGCCCTGCACTTCCTCT 1493561 Query 5564 ACATCGGGGAACGCAG-CGCGCTCGCAGATCAGCTGCGCTATTCGGTCGCCCGTCTTTAC 5622 | || ||| | | || ||||| || || ||||| || || || |||||| |||| || Sbjct 1493560 ATCTCTGGGTA-GTAGATCCGCTCACAAATAAGCTGGGCGATGCGATCGCCCTTCTTCAC 1493502 Query 5623 CTCGAAATCGTTGTGGCCGAAGTTGAACAGCACCACGCCCACGTTGCCGCGGTAGTCGGC 5682 || || | | | ||||||||| || ||| | || || || | || | |||||| | Sbjct 1493501 TTCAAACTTCTCTTTGCCGAAGTTAAAAAGCGCGACACCAACATCTCCTCTGTAGTCTTC 1493442 Query 5683 GTCTATCACGCCCGCGCCCACGTCGATGAAGTGCTTGACCGCCAGGCCGGAGCGGGGAGC 5742 ||||| || || || || || || |||||||| ||| | |||| ||| ||||| ||||| Sbjct 1493441 ATCTATGACCCCAGCTCCGACATCTATGAAGTGTTTGGCAGCCAAGCCCGAGCGTGGAGC 1493382 Query 5743 CACGCGGCCGTAGCACCCATCGGGAAGCTGTATCTGCAGGTCCGT 5787 ||| ||| ||||||||| |||||| ||||| | |||||| Sbjct 1493381 CACTGTGCCATAGCACCCAGAGGGAAGGGCGATCTGGATGTCCGT 1493337 >seq131 Length=8239869 Score = 114 bits (126), Expect = 1e-20 Identities = 111/143 (78%), Gaps = 0/143 (0%) Strand=Plus/Minus Query 127171 GGGTGCCAAGCTCTGTCTGAGATGATTCAGTTCTACCTCGAAGAGGTCATGCCACAGGCA 127230 || |||||||| |||| |||||||| ||||| ||||| | |||||| ||||| ||||| Sbjct 2014426 GGTTGCCAAGCCTTGTCAGAGATGATCCAGTTTTACCTGGTAGAGGTGATGCCCAAGGCA 2014367 Query 127231 GAAAATCACGGACCCGACATAAAAGAACACGTCAATTCCCTGGGTGAAAAGCTGAAGACA 127290 || || |||| || ||||| || || || || || || ||||| || ||||||||||| Sbjct 2014366 GAGAACCACGACCCAGACATCAAGGAGCATGTGAACTCTCTGGGGGAGAAGCTGAAGACC 2014307 Query 127291 TTGAGACTTCGACTGCGTCGCTG 127313 | || ||||| ||| | ||||| Sbjct 2014306 CTCAGGCTTCGGCTGAGACGCTG 2014284 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 430017003410120