Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Octodon_20degus_20[refseq_20GCF_5F000260255.1_202012-05-01] 7,135 sequences; 2,995,889,303 total letters Query= NC_005832.1 Length=106332 Score E Sequences producing significant alignments: (Bits) Value seq74 306 3e-78 seq107 194 1e-44 seq82 152 3e-32 seq109 132 3e-26 seq75 100 2e-16 >seq74 Length=13126430 Score = 306 bits (338), Expect = 3e-78 Identities = 482/686 (70%), Gaps = 11/686 (2%) Strand=Plus/Plus Query 25281 ACTGCCATCCTCATCCTTATGGCGGGATGAGGGTCGTAACCCTCCAGGGAGAAATCCTCT 25340 || |||||| | || | |||| ||| || || | ||| || ||||| ||| || || Sbjct 9227782 ACAGCCATCTCCTTCTTAATGGAGGGGTGGGGATTGTACCCTTCCAGCTGGAAGTCTTCA 9227841 Query 25341 GCCTTAAAGTCGTCCAGGCTCTCCACCCTCCTGTTTATCCTCAG-TGTGGGAAAGGGTCT 25399 || | ||||| || | |||| || | | || | || | ||||||||| || Sbjct 9227842 GCTGTGAAGTCATCGATTGTCTCAACTTTTCGAAGGATTTTGAGCTTTGGGAAAGGC-CT 9227900 Query 25400 GGGCTCCCTCTCGAGCTGAGTCTTCAGCGGTTCTACGTGATCCAGGTAGACGTGAGCGTC 25459 || || | | ||||||||||||||||| | | ||||| |||||||| || ||||| Sbjct 9227901 TGGTTCTCGTTGAAGCTGAGTCTTCAGCGGCTTGATGTGATTCAGGTAGATATGTGCGTC 9227960 Query 25460 TCCCAGAGTGTGGACAAACTCTCCCGGTTCTAGCCCGGTAACGTAAGCCATCATGTACGT 25519 ||||| |||||| || || ||||| || | || || || |||| || | |||||| || Sbjct 9227961 TCCCAAAGTGTGCACGAAGTCTCCTGGCTTCAGGCCTGTGACGTGCGCGACCATGTAGGT 9228020 Query 25520 GAGGAGAAAGTAGCTGGCGATGTTAAAGGGTACCCCGAACCCCATGTCCCCCCGACCTCT 25579 ||| || | ||||||||||||| |||||||| || | ||||||| |||| |||| || Sbjct 9228021 GAGCAGCGCGCAGCTGGCGATGTTGAAGGGTACGCCCAGGCCCATGT-CCCCTGACCGCT 9228079 Query 25580 GGTAGAGCTGACACGAGAGCTCTTCGTCGCTCACGTAAAACTGACACATGGTGTAGCACG 25639 |||| ||||| || || ||||| ||| |||||| ||||| |||| ||||| ||| | Sbjct 9228080 GGTACAGCTGGCAGGACAGCTCCCCGTTCACCACGTAGAACTGGCACAGGGTGTGGCAGG 9228139 Query 25640 GAGGAAGAGCTATAAGGCCCAAGTCTTTAGGGTTCCAGGCGCACACGATGATGCACCTGT 25699 |||| || || || || | ||||| ||||||||||| |||| |||||| | |||| Sbjct 9228140 GAGGCAGCGCCATCAGAGGGAGATCTTTTGGGTTCCAGGCACACATGATGATCCTTCTGT 9228199 Query 25700 CTTCTGGGTTGTCCCTGAT----AAGATCCGCGGTGTTTTGCAGCTGATCCACCCCCATC 25755 | | |||| | |||| |||| ||| |||||||| || || || Sbjct 9228200 CGTTAGGGTCGGTTTTGATGGTGTTGATC----ACGTTCTGCAGCTGGTCAACTCCTTGA 9228255 Query 25756 CCCGAGTAGTCTGCCCTCATGTCCGTGTACTCTGCTCCGAAATACCTCCACTGGAACCCG 25815 |||||||| |||| | | || |||| ||||| ||||||| |||||||||||| || Sbjct 9228256 CCCGAGTAATCTGAGTCCGTATCTTTGTAGTCTGCCCCGAAATGCCTCCACTGGAAGCCA 9228315 Query 25816 TACACCGGTCCTAGGTCTCCATCTTCCCTGTGCTCAAAGCCCCTCTTATCCAAAAAGTCT 25875 || || || || ||||| || |||| | | ||| ||| | |||| || || Sbjct 9228316 TAGACGGGGCCCAGGTCCCCTTCTTTGCGGCTAGAAAACCCCAGGCTGTCCAGGAAATCC 9228375 Query 25876 CTGGAACCATTGGCGTCCCAGATCTTTACCCCCTTCTCGGAGAGCTCTTTGGAGTTTGTG 25935 | ||| |||||||| ||||||||||| || || || || ||||| |||| ||||| Sbjct 9228376 CGGGACCCATTGGCATCCCAGATCTTCACTCCTTTGGATGACAGCTCCTTGGCATTTGTA 9228435 Query 25936 GACCCTCTGACGAACCACAGCAGCTC 25961 || || ||| |||||||||||||| Sbjct 9228436 GATCCCTTGATAAACCACAGCAGCTC 9228461 >seq107 Length=10030941 Score = 194 bits (214), Expect = 1e-44 Identities = 382/562 (68%), Gaps = 30/562 (5%) Strand=Plus/Minus Query 25413 AGCTGAGTCTTCAGCGGTTCTACGTGATCCAGGTAGACGTGAGCGTCTCCCAGAGTGTGG 25472 |||||||| |||||| | || | ||||| |||||||| || || ||||||| ||| || Sbjct 3003366 AGCTGAGTTTTCAGCAGCTCAATGTGATTCAGGTAGATATGTGCATCTCCCAAAGTATGC 3003307 Query 25473 ACAAACTCTCCCGGTTCTAGCCCGGTAACGTAAGCCATCATGTACGTGAGGAGAAAGTAG 25532 ||||| |||| | || | || | || ||| ||||| || |||| Sbjct 3003306 ACAAAGCCTCCTG--------------ACATGCGCGACCAAGTAGGTGAGCAGCGCGTAG 3003261 Query 25533 CTGGCGATGTTAAAGGGTACCCCGAACCCCATGTCCCCCCGACCTCTG--GTAGAGCTGA 25590 ||| ||||||| ||||| || || | ||||| ||||| |||| ||| ||| |||| Sbjct 3003260 CTGACGATGTTGAAGGGCACTCCCAGGCCCATATCCCCT-GACCACTGTGGTACGGCTGG 3003202 Query 25591 CACGAGAGCTCTTCGTCGCTCACGTAAAACTGACACATGGTGTAGCACGGAGGAAGAGCT 25650 || || ||||| | | ||||||||||| |||| ||||| ||| ||||| ||||| Sbjct 3003201 CAGGACAGCTCCCCATTCACCACGTAAAACTAGCACAGGGTGTGGCAGGGAGGCAGAGCC 3003142 Query 25651 ATAAGGCCCAAGTCTTTAGGGTTCCAGGCGCACACGATGATGCACCTGTCTTCTGGGTTG 25710 || || | ||||| |||| ||||| |||| |||||| | ||||| || |||||| Sbjct 3003141 ATCAGAGGGAGATCTTTCAGGTTTCAGGCACACATGATGATCCTTCTGTCATCAGGGTTG 3003082 Query 25711 TCCCTGAT----AAGATCCGCGGTGTTTTGCAGCTGATCCACCCCCATCCCCGAGTAGTC 25766 |||| |||| ||| |||||||| || | || || ||||| || Sbjct 3003081 GTTTTGATGGTGTTGATC----ACGTTCTGCAGCTGGTCATCTCCTTGACCTGAGTAATC 3003026 Query 25767 TGCCCTCATGTCCGTGTACTCTGCTCCGAAATACCTCCACTGGAACCCGTACACCGGTCC 25826 || ||| | ||| || || | ||||| |||||||||||| || | || || || Sbjct 3003025 TGAGTCCATACCTTCGTAGTCAGCCCTGAAATGCCTCCACTGGAAGCCACAGACGGGGCC 3002966 Query 25827 TAGGTCTCCATCTTCCCTGT-GCT--CAAAGCCCCTCTTATCCAAAAAGTCTCTGGAACC 25883 ||||| || ||||| || ||| ||| ||| |||||| || || | ||| || Sbjct 3002965 CAGGTCCCC--CTTCCTGGTGGCTAGAAAACCCCAGGCTATCCAGGAAATCCCGGGACCC 3002908 Query 25884 ATTGGCGTCCCAGATCTTTACCCCCTTCTCGGAGAGCTCTTTGGAGTTTGTGGACCCTCT 25943 |||||| ||||||||||| || || || || ||||| |||| |||| | || | Sbjct 3002907 ATTGGCATCCCAGATCTTCACTCCTTTGGATGACAGCTCCTTGGCATTTGCATATCCCTT 3002848 Query 25944 GACGAACCACAGCAGCTCCGCC 25965 || ||||||||||| ||| || Sbjct 3002847 GATAAACCACAGCAGTTCCTCC 3002826 >seq82 Length=12555031 Score = 152 bits (168), Expect = 3e-32 Identities = 373/559 (67%), Gaps = 25/559 (4%) Strand=Plus/Plus Query 25415 CTGAGTCTTCAGCGGTTCTACGTGATCCAGGTAGACGTGAGCGTCTCCCAGAGTGTGGAC 25474 ||| || |||||| | || | ||||| || ||||| || |||||| ||| || || || Sbjct 10556193 CTGGGTTTTCAGCAGCTCAATGTGATTCAAGTAGATATGTGCGTCTGCCAATGTATGCAC 10556252 Query 25475 AAACTCTCCCGG-TTCTAGCCCGGTAACGTAAGCCATCATGTACGTGAGGAGAAAGTAGC 25533 || || || | ||| |||||| | || | | |||||| ||| || ||||| Sbjct 10556253 CAAGTCACCTGCCTTCAAGCCCGCGAT-GTGCGTGACCATGTAGTGGAGCAGCCCGTAGC 10556311 Query 25534 TGGCGATGTTAAAGGGTACCCCGAACCCCATGTCCCCCCGACCTCTGGTAGAGCTGACAC 25593 |||||||||| ||||| || || | |||| || | | |||| |||||| ||||| Sbjct 10556312 TGGCGATGTTGAAGGGCACACCCAGGCCCACGTTCTCT-GACCGCTGGTATAGCTG---- 10556366 Query 25594 GAGAGCTCTTCGTCGCTCACGTAAAACTGACACATGGTGTAGCACGGAGGAAGAGCTATA 25653 |||| |||| |||||| ||||| |||| || || ||| ||||| || || || Sbjct 10556367 ----GCTCCTCGTTCACCACGTAGAACTGGCACAGGGCGTGGCAGGGAGGCAGGGCCATC 10556422 Query 25654 AGGCCCAAGTCTTTAGGGTTCCAGGCGCACACGATGATGCACCTGTCTTCTGGGTTGTCC 25713 || | ||| | ||||||||||| |||| |||||| | |||| || ||||| | Sbjct 10556423 AGAGGGAGATCTGTTGGGTTCCAGGCACACATGATGATACTTCTGTTGTCAGGGTTAACT 10556482 Query 25714 CTGA----TAAGATCCGCGGTGTTTTGCAGCTGATCCACCCCCATCCCCGAGTAGTCTGC 25769 ||| |||| | || |||||||| | || || || |||| |||| Sbjct 10556483 TTGACGGTGTTGATC----GCATTCTGCAGCTGGTTAACTCCTTGACCTAAGTAATCTGA 10556538 Query 25770 CCTCATGTCCGTGTACTCTGCTCCGAAATACCTCCACTGGAACCCGTACACCGGTCCTAG 25829 ||| || |||| || || | ||||||| ||||||||| | || || || || || Sbjct 10556539 GTCCATATCTTTGTAGTCAGCACAAAAATACCACCACTGGAAGTCATAGACAGGGCCCAG 10556598 Query 25830 GTCTCCATCTTCCCTGTGCT--CAAAGCCCCTCTTA-TCCAAAAAGTCTCTGGAACCATT 25886 ||| | || || ||| | ||| |||| | || || || ||| ||||| Sbjct 10556599 GTCCC---CTGCCTGGTGGTTAGAAAACCCCAGGCAGTCTGGGAAATCCTGGGACCCATT 10556655 Query 25887 GGCGTCCCAGATCTTTACCCCCTTCTCGGAGAGCTCTTTGGAGTTTGTGGACCCTCTGAC 25946 ||| ||||||||||| || ||||| | |||||||||| || | || || ||| Sbjct 10556656 GGCATCCCAGATCTTCACTCCCTTGGATGGCAGCTCTTTGGCACTTATAGATCCCTTGAT 10556715 Query 25947 GAACCACAGCAGCTCCGCC 25965 ||||||||||||||| || Sbjct 10556716 AAACCACAGCAGCTCCTCC 10556734 >seq109 Length=10228628 Score = 132 bits (146), Expect = 3e-26 Identities = 383/580 (66%), Gaps = 22/580 (4%) Strand=Plus/Plus Query 25387 TGGGAAAGGGTCTGGGCTCCCTCTCGAGCTGAGTCTTCAGCGGTTCTACGTGATCCAGGT 25446 ||||||||| || || || | || |||||||| |||||| | || ||||| |||| Sbjct 4836432 TGGGAAAGGC-CTTGGTTCTCGCTGAAGCTGAGTTTTCAGCTGCTCAGTGTGATTTAGGT 4836490 Query 25447 AGACGTGAGCGTCTCCCAGAGTGTGGACAAACTCTCCCGG-TTCTAGCCCGGTAACGTAA 25505 ||| | || |||| || ||| || ||||| || || || ||| |||| | |||| Sbjct 4836491 AGATAGGTGCATCTCTCAAAGTATGCACAAAGTCACCTGGCTTCAGGCCCCGCGACGTGC 4836550 Query 25506 GCCATCATGTACGTGAGGAGAAAGTAGCTGGCGATGTTAAAGGGTACCCCGAACCCCATG 25565 || | || ||| ||||| |||||||| || | | |||| || || | |||||| Sbjct 4836551 GCGA-CAAGTAGGTGAGCCCCGCGTAGCTGGTGAGGCTGCAGGGCACGCCCAGGCCCATG 4836609 Query 25566 TCCCCCCGACCTCTGGTAGAGCTGACACGAGAGCTCTTCGTCGCTCACGTAAAACTGACA 25625 | |||| |||| ||| || ||||| || || ||||| | | |||| | | ||| Sbjct 4836610 T-CCCCTGACCGCTGCTACAGCTGGCAGGACAGCTC--CCT-ATTCAC-CAGAGCTG--- 4836661 Query 25626 CATGGTGTAGCACGGAGGAAGAGCTATAAGGCCCAAGTCTTTAGGGTTCCAGGCGCACAC 25685 ||||| ||| ||||| || || | || | ||||| |||||||||| | ||| Sbjct 4836662 ---GGTGTGGCAGGGAGGCAGCGCCACCAGAGGGAGATCTTTCGGGTTCCAGGAGTACAT 4836718 Query 25686 GATGATGCACCTGTCTTCTGGGTTGTCCCTGATA----AGATCCGCGGTGTTTTGCAGCT 25741 |||||| | || || || |||||| ||| | |||| |||| ||||||| Sbjct 4836719 GATGATCCTTCTATCATCAGGGTTGGTTTTGACAGCGTTGATC----ATGTTCTGCAGCT 4836774 Query 25742 GATCCACCCCCATCCCCGAGTAGTCTGCCCTCATGTCCGTGTACTCTGCTCCGAAATACC 25801 | | || || |||| | | |||| |||||| |||| || || ||||||| || Sbjct 4836775 GGCCTACTCCTTGACCCGGGCAATCTGAGTCCATGTCTTTGTAGTCAGCCCCGAAATGCC 4836834 Query 25802 TCCACTGGAACCCGTACACCGGTCCTAGGTCTCCATCTTCCCTGTGCTCAAAGCCCCTCT 25861 |||| |||| || || || || || |||| || || | ||| | | ||| Sbjct 4836835 TCCAGGGGAAGCCATAGACGGGGCCCAGGTGCCCCTCCTGGCTGCTAGAACACCCCAGGC 4836894 Query 25862 TATCCAAAAAGTCTCTGGAACCATTGGCGTCCCAGATCTTTACCCCCTTCTCGGAGAGCT 25921 | |||| || | | ||| || |||| ||||||||||| || || || || |||| Sbjct 4836895 TGTCCAGGAAACCCCAGGACCCGCTGGCATCCCAGATCTTCACTCCTTTGGATGACAGCT 4836954 Query 25922 CTTTGGAGTTTGTGGACCCTCTGACGAACCACAGCAGCTC 25961 ||||| || || || | ||| |||||||| |||| Sbjct 4836955 CTTTGACATTAGTAGATACCTTGATAAACCACAGTGGCTC 4836994 >seq75 Length=11870250 Score = 100 bits (110), Expect = 2e-16 Identities = 122/165 (74%), Gaps = 1/165 (1%) Strand=Plus/Minus Query 25491 AGCCCGGTAACGTAAGCCATCATGTACGTGAGGAGAAAGTAGCTGGCGATGTTAAAGGGT 25550 || || || |||| || | |||||| ||||| || |||||||||||||| ||||| Sbjct 4085023 AGGCCCGTGACGTGCGCGACCATGTAGGTGAGCAGCGCATAGCTGGCGATGTTGAAGGGC 4084964 Query 25551 ACCCCGAACCCCATGTCCCCCCGACCTCTGGTAGAGCTGACACGAGAGCTCTTCGTCGCT 25610 || || | ||||||| |||| |||| |||||| ||||| || || ||||| | | Sbjct 4084963 ACGCCCAGGCCCATGT-CCCCTGACCGCTGGTACAGCTGGCAGGACAGCTCCCCATTCAC 4084905 Query 25611 CACGTAAAACTGACACATGGTGTAGCACGGAGGAAGAGCTATAAG 25655 |||||| ||||| |||| || || ||| ||||| || || || || Sbjct 4084904 CACGTAGAACTGGCACAGGGCGTGGCAGGGAGGCAGCGCCATCAG 4084860 Score = 82.4 bits (90), Expect = 5e-11 Identities = 119/168 (71%), Gaps = 0/168 (0%) Strand=Plus/Minus Query 25773 CATGTCCGTGTACTCTGCTCCGAAATACCTCCACTGGAACCCGTACACCGGTCCTAGGTC 25832 ||| || |||| || || ||||||| |||||||||||| || || || || || ||||| Sbjct 4081483 CATATCTTTGTAATCAGCCCCGAAATGCCTCCACTGGAAGCCATAGACGGGGCCCAGGTC 4081424 Query 25833 TCCATCTTCCCTGTGCTCAAAGCCCCTCTTATCCAAAAAGTCTCTGGAACCATTGGCGTC 25892 || || | | | ||| ||| | |||| || || | ||| |||||||| || Sbjct 4081423 CCCTTCCTGGCGGCTAGAAAACCCCAGGCTGTCCAGGAAATCCCGGGACCCATTGGCATC 4081364 Query 25893 CCAGATCTTTACCCCCTTCTCGGAGAGCTCTTTGGAGTTTGTGGACCC 25940 |||||||||||| || || || ||||| |||| ||||| || || Sbjct 4081363 CCAGATCTTTACTCCTTTGGATGACAGCTCCTTGGCATTTGTAGATCC 4081316 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 340108022378355