Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Octodon_20degus_20[refseq_20GCF_5F000260255.1_202012-05-01] 7,135 sequences; 2,995,889,303 total letters Query= NC_005839.2 Length=131680 Score E Sequences producing significant alignments: (Bits) Value seq203 89.7 4e-13 seq164 89.7 4e-13 seq146 89.7 4e-13 seq79 86.0 5e-12 seq29 84.2 2e-11 >seq203 Length=4329578 Score = 89.7 bits (98), Expect = 4e-13 Identities = 159/232 (69%), Gaps = 0/232 (0%) Strand=Plus/Minus Query 48499 ACCTCCGCGCAACCTTAACACTAAATGAAGTGTGCTCTCCTTTTGAATGTTGTAATCAGC 48558 ||| || || | || ||||| | |||||| || ||||||||||||||||||||||| Sbjct 2169464 ACCACCACGGAGTCTCAACACAAGATGAAGAGTAGACTCCTTTTGAATGTTGTAATCAGA 2169405 Query 48559 CAATTGTCGCTCGTCCTCCAGCTGCTTACCGCCGTAAATTAAACGCTGCTGATCCACCGG 48618 ||| || | || |||||||||||||| | | || | | |||||||| || Sbjct 2169404 CAAGGTACGTCCATCTTCCAGCTGCTTACCAGCAAAGATCAGCCTTTGCTGATCAGGAGG 2169345 Query 48619 CACACTTTCCTTGTCCATAATTTTCTGCTTGATAGACGCTATGGTATCGGTAGACTCCGT 48678 | | |||||| ||| || || ||| | | |||| || || | | || Sbjct 2169344 AATTCCTTCCTTATCCTGGATCTTGGCCTTTACATTTTCTATAGTGTCCGAGGGTTCAAC 2169285 Query 48679 CTCGACTGTTATGGTTTTACCGGTGAGAGTTTTCACAAAAATCTGCATCGTG 48730 ||||| || ||||| || || || || |||||||| |||||||||||| || Sbjct 2169284 CTCGAGCGTGATGGTCTTCCCCGTAAGGGTTTTCACGAAAATCTGCATCTTG 2169233 >seq164 Length=5921534 Score = 89.7 bits (98), Expect = 4e-13 Identities = 159/232 (69%), Gaps = 0/232 (0%) Strand=Plus/Minus Query 48499 ACCTCCGCGCAACCTTAACACTAAATGAAGTGTGCTCTCCTTTTGAATGTTGTAATCAGC 48558 ||| || || | || ||||| | |||||| || ||||||||||||||||||||||| Sbjct 5181252 ACCACCACGGAGTCTCAACACAAGATGAAGAGTAGACTCCTTTTGAATGTTGTAATCAGA 5181193 Query 48559 CAATTGTCGCTCGTCCTCCAGCTGCTTACCGCCGTAAATTAAACGCTGCTGATCCACCGG 48618 ||| || | || |||||||||||||| | | || | | |||||||| || Sbjct 5181192 CAAGGTACGTCCATCTTCCAGCTGCTTACCAGCAAAGATCAGCCTTTGCTGATCAGGAGG 5181133 Query 48619 CACACTTTCCTTGTCCATAATTTTCTGCTTGATAGACGCTATGGTATCGGTAGACTCCGT 48678 | | |||||| ||| || || ||| | | |||| || || | | || Sbjct 5181132 AATTCCTTCCTTATCCTGGATCTTGGCCTTTACATTTTCTATAGTGTCCGAGGGTTCAAC 5181073 Query 48679 CTCGACTGTTATGGTTTTACCGGTGAGAGTTTTCACAAAAATCTGCATCGTG 48730 ||||| || ||||| || || || || |||||||| |||||||||||| || Sbjct 5181072 CTCGAGCGTGATGGTCTTCCCAGTAAGGGTTTTCACGAAAATCTGCATCTTG 5181021 >seq146 Length=7541600 Score = 89.7 bits (98), Expect = 4e-13 Identities = 159/232 (69%), Gaps = 0/232 (0%) Strand=Plus/Minus Query 48499 ACCTCCGCGCAACCTTAACACTAAATGAAGTGTGCTCTCCTTTTGAATGTTGTAATCAGC 48558 ||| || || | || ||||| | |||||| || ||||||||||||||||||||||| Sbjct 3493641 ACCACCACGGAGTCTCAACACAAGATGAAGGGTAGACTCCTTTTGAATGTTGTAATCAGG 3493582 Query 48559 CAATTGTCGCTCGTCCTCCAGCTGCTTACCGCCGTAAATTAAACGCTGCTGATCCACCGG 48618 ||| | || | || ||||| |||||||| | | || | | |||||||| || Sbjct 3493581 CAAGTTCCGTCCATCTTCCAGTTGCTTACCAGCAAAGATCAGCCTTTGCTGATCAGGAGG 3493522 Query 48619 CACACTTTCCTTGTCCATAATTTTCTGCTTGATAGACGCTATGGTATCGGTAGACTCCGT 48678 | | |||||| ||| || || ||| | | |||| || || | | || Sbjct 3493521 AATTCCTTCCTTATCCTGGATCTTGGCCTTTACATTTTCTATAGTGTCCGAGGGTTCACC 3493462 Query 48679 CTCGACTGTTATGGTTTTACCGGTGAGAGTTTTCACAAAAATCTGCATCGTG 48730 ||||| ||| ||||| || || | || |||||||| |||||||||||| || Sbjct 3493461 CTCGAGTGTGATGGTCTTCCCCATAAGGGTTTTCACGAAAATCTGCATCTTG 3493410 >seq79 Length=11620627 Score = 86.0 bits (94), Expect = 5e-12 Identities = 158/232 (68%), Gaps = 0/232 (0%) Strand=Plus/Plus Query 48499 ACCTCCGCGCAACCTTAACACTAAATGAAGTGTGCTCTCCTTTTGAATGTTGTAATCAGC 48558 ||| || || | || ||||| | |||||| || ||||||||||||||||||||||| Sbjct 6673210 ACCACCACGGAGTCTCAACACAAGATGAAGGGTAGACTCCTTTTGAATGTTGTAATCAGA 6673269 Query 48559 CAATTGTCGCTCGTCCTCCAGCTGCTTACCGCCGTAAATTAAACGCTGCTGATCCACCGG 48618 ||| || | || ||| | |||||||| || | || | | |||||||| || Sbjct 6673270 CAAGGTACGTCCATCTTCCCGTTGCTTACCACCACAGATCAGCCTTTGCTGATCAGGAGG 6673329 Query 48619 CACACTTTCCTTGTCCATAATTTTCTGCTTGATAGACGCTATGGTATCGGTAGACTCCGT 48678 | | |||||| ||| || || ||| | | |||| || || | | || Sbjct 6673330 AATTCCTTCCTTATCCTGGATCTTGGCCTTTACATTTTCTATAGTGTCTGAGGGCTGAAC 6673389 Query 48679 CTCGACTGTTATGGTTTTACCGGTGAGAGTTTTCACAAAAATCTGCATCGTG 48730 ||| | ||| ||||| || || || || |||||||||||||||| |||| || Sbjct 6673390 CTCCAGTGTGATGGTCTTCCCCGTAAGGGTTTTCACAAAAATCTCCATCTTG 6673441 Score = 84.2 bits (92), Expect = 2e-11 Identities = 157/231 (68%), Gaps = 0/231 (0%) Strand=Plus/Minus Query 48496 AAAACCTCCGCGCAACCTTAACACTAAATGAAGTGTGCTCTCCTTTTGAATGTTGTAATC 48555 || |||||| | || | | ||| | ||| || ||| |||||| || ||||||||||| Sbjct 4060268 AACACCTCCTCTCAGGCGGAGCACCAGATGCAGGGTGGACTCCTTCTGGATGTTGTAATC 4060209 Query 48556 AGCCAATTGTCGCTCGTCCTCCAGCTGCTTACCGCCGTAAATTAAACGCTGCTGATCCAC 48615 || | ||| | || ||||||||||| || | | || | | |||||| || Sbjct 4060208 AGAGAGGGTGCGCCCATCTTCCAGCTGCTTGCCAGCAAAGATCAGCCTCTGCTGGTCAGG 4060149 Query 48616 CGGCACACTTTCCTTGTCCATAATTTTCTGCTTGATAGACGCTATGGTATCGGTAGACTC 48675 || | | |||||||||| || || ||||| | | ||||| ||| | | ||| Sbjct 4060148 GGGTATGCCTTCCTTGTCCTGGATCTTGGCCTTGACGTTCTCAATGGTGTCGCTGGGCTC 4060089 Query 48676 CGTCTCGACTGTTATGGTTTTACCGGTGAGAGTTTTCACAAAAATCTGCAT 48726 | ||||| || ||||| || || ||||| || ||||| || |||||||| Sbjct 4060088 CACCTCGAGGGTGATGGTCTTGCCAGTGAGGGTCTTCACGAAGATCTGCAT 4060038 >seq29 Length=19401444 Score = 84.2 bits (92), Expect = 2e-11 Identities = 150/219 (68%), Gaps = 0/219 (0%) Strand=Plus/Minus Query 48512 CTTAACACTAAATGAAGTGTGCTCTCCTTTTGAATGTTGTAATCAGCCAATTGTCGCTCG 48571 || ||||| | || ||| || ||||||||||||||||||||||| ||| || | Sbjct 6047438 CTCAACACAAGATTAAGAGTAGACTCCTTTTGAATGTTGTAATCAGACAAGGTACGTCCA 6047379 Query 48572 TCCTCCAGCTGCTTACCGCCGTAAATTAAACGCTGCTGATCCACCGGCACACTTTCCTTG 48631 || |||||||||||||| | | || | | |||||||| || | | |||||| Sbjct 6047378 TCTTCCAGCTGCTTACCAGCAAAGATCAGCCTTTGCTGATCAGAAGGAATTCCTTCCTTA 6047319 Query 48632 TCCATAATTTTCTGCTTGATAGACGCTATGGTATCGGTAGACTCCGTCTCGACTGTTATG 48691 ||| || || ||| | | |||| || || | | || ||||| || ||| Sbjct 6047318 TCCTGGATCTTGGCCTTTACATTTTCTATAGTGTCCGAGGGTTCAACCTCGAGCGTGATG 6047259 Query 48692 GTTTTACCGGTGAGAGTTTTCACAAAAATCTGCATCGTG 48730 || || || || || |||||||| |||||||||||| || Sbjct 6047258 GTCTTCCCCGTAAGGGTTTTCACGAAAATCTGCATCTTG 6047220 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 421214568917135