Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Octodon_20degus_20[refseq_20GCF_5F000260255.1_202012-05-01]
7,135 sequences; 2,995,889,303 total letters
Query= NC_005839.2
Length=131680
Score E
Sequences producing significant alignments: (Bits) Value
seq203 89.7 4e-13
seq164 89.7 4e-13
seq146 89.7 4e-13
seq79 86.0 5e-12
seq29 84.2 2e-11
>seq203
Length=4329578
Score = 89.7 bits (98), Expect = 4e-13
Identities = 159/232 (69%), Gaps = 0/232 (0%)
Strand=Plus/Minus
Query 48499 ACCTCCGCGCAACCTTAACACTAAATGAAGTGTGCTCTCCTTTTGAATGTTGTAATCAGC 48558
||| || || | || ||||| | |||||| || |||||||||||||||||||||||
Sbjct 2169464 ACCACCACGGAGTCTCAACACAAGATGAAGAGTAGACTCCTTTTGAATGTTGTAATCAGA 2169405
Query 48559 CAATTGTCGCTCGTCCTCCAGCTGCTTACCGCCGTAAATTAAACGCTGCTGATCCACCGG 48618
||| || | || |||||||||||||| | | || | | |||||||| ||
Sbjct 2169404 CAAGGTACGTCCATCTTCCAGCTGCTTACCAGCAAAGATCAGCCTTTGCTGATCAGGAGG 2169345
Query 48619 CACACTTTCCTTGTCCATAATTTTCTGCTTGATAGACGCTATGGTATCGGTAGACTCCGT 48678
| | |||||| ||| || || ||| | | |||| || || | | ||
Sbjct 2169344 AATTCCTTCCTTATCCTGGATCTTGGCCTTTACATTTTCTATAGTGTCCGAGGGTTCAAC 2169285
Query 48679 CTCGACTGTTATGGTTTTACCGGTGAGAGTTTTCACAAAAATCTGCATCGTG 48730
||||| || ||||| || || || || |||||||| |||||||||||| ||
Sbjct 2169284 CTCGAGCGTGATGGTCTTCCCCGTAAGGGTTTTCACGAAAATCTGCATCTTG 2169233
>seq164
Length=5921534
Score = 89.7 bits (98), Expect = 4e-13
Identities = 159/232 (69%), Gaps = 0/232 (0%)
Strand=Plus/Minus
Query 48499 ACCTCCGCGCAACCTTAACACTAAATGAAGTGTGCTCTCCTTTTGAATGTTGTAATCAGC 48558
||| || || | || ||||| | |||||| || |||||||||||||||||||||||
Sbjct 5181252 ACCACCACGGAGTCTCAACACAAGATGAAGAGTAGACTCCTTTTGAATGTTGTAATCAGA 5181193
Query 48559 CAATTGTCGCTCGTCCTCCAGCTGCTTACCGCCGTAAATTAAACGCTGCTGATCCACCGG 48618
||| || | || |||||||||||||| | | || | | |||||||| ||
Sbjct 5181192 CAAGGTACGTCCATCTTCCAGCTGCTTACCAGCAAAGATCAGCCTTTGCTGATCAGGAGG 5181133
Query 48619 CACACTTTCCTTGTCCATAATTTTCTGCTTGATAGACGCTATGGTATCGGTAGACTCCGT 48678
| | |||||| ||| || || ||| | | |||| || || | | ||
Sbjct 5181132 AATTCCTTCCTTATCCTGGATCTTGGCCTTTACATTTTCTATAGTGTCCGAGGGTTCAAC 5181073
Query 48679 CTCGACTGTTATGGTTTTACCGGTGAGAGTTTTCACAAAAATCTGCATCGTG 48730
||||| || ||||| || || || || |||||||| |||||||||||| ||
Sbjct 5181072 CTCGAGCGTGATGGTCTTCCCAGTAAGGGTTTTCACGAAAATCTGCATCTTG 5181021
>seq146
Length=7541600
Score = 89.7 bits (98), Expect = 4e-13
Identities = 159/232 (69%), Gaps = 0/232 (0%)
Strand=Plus/Minus
Query 48499 ACCTCCGCGCAACCTTAACACTAAATGAAGTGTGCTCTCCTTTTGAATGTTGTAATCAGC 48558
||| || || | || ||||| | |||||| || |||||||||||||||||||||||
Sbjct 3493641 ACCACCACGGAGTCTCAACACAAGATGAAGGGTAGACTCCTTTTGAATGTTGTAATCAGG 3493582
Query 48559 CAATTGTCGCTCGTCCTCCAGCTGCTTACCGCCGTAAATTAAACGCTGCTGATCCACCGG 48618
||| | || | || ||||| |||||||| | | || | | |||||||| ||
Sbjct 3493581 CAAGTTCCGTCCATCTTCCAGTTGCTTACCAGCAAAGATCAGCCTTTGCTGATCAGGAGG 3493522
Query 48619 CACACTTTCCTTGTCCATAATTTTCTGCTTGATAGACGCTATGGTATCGGTAGACTCCGT 48678
| | |||||| ||| || || ||| | | |||| || || | | ||
Sbjct 3493521 AATTCCTTCCTTATCCTGGATCTTGGCCTTTACATTTTCTATAGTGTCCGAGGGTTCACC 3493462
Query 48679 CTCGACTGTTATGGTTTTACCGGTGAGAGTTTTCACAAAAATCTGCATCGTG 48730
||||| ||| ||||| || || | || |||||||| |||||||||||| ||
Sbjct 3493461 CTCGAGTGTGATGGTCTTCCCCATAAGGGTTTTCACGAAAATCTGCATCTTG 3493410
>seq79
Length=11620627
Score = 86.0 bits (94), Expect = 5e-12
Identities = 158/232 (68%), Gaps = 0/232 (0%)
Strand=Plus/Plus
Query 48499 ACCTCCGCGCAACCTTAACACTAAATGAAGTGTGCTCTCCTTTTGAATGTTGTAATCAGC 48558
||| || || | || ||||| | |||||| || |||||||||||||||||||||||
Sbjct 6673210 ACCACCACGGAGTCTCAACACAAGATGAAGGGTAGACTCCTTTTGAATGTTGTAATCAGA 6673269
Query 48559 CAATTGTCGCTCGTCCTCCAGCTGCTTACCGCCGTAAATTAAACGCTGCTGATCCACCGG 48618
||| || | || ||| | |||||||| || | || | | |||||||| ||
Sbjct 6673270 CAAGGTACGTCCATCTTCCCGTTGCTTACCACCACAGATCAGCCTTTGCTGATCAGGAGG 6673329
Query 48619 CACACTTTCCTTGTCCATAATTTTCTGCTTGATAGACGCTATGGTATCGGTAGACTCCGT 48678
| | |||||| ||| || || ||| | | |||| || || | | ||
Sbjct 6673330 AATTCCTTCCTTATCCTGGATCTTGGCCTTTACATTTTCTATAGTGTCTGAGGGCTGAAC 6673389
Query 48679 CTCGACTGTTATGGTTTTACCGGTGAGAGTTTTCACAAAAATCTGCATCGTG 48730
||| | ||| ||||| || || || || |||||||||||||||| |||| ||
Sbjct 6673390 CTCCAGTGTGATGGTCTTCCCCGTAAGGGTTTTCACAAAAATCTCCATCTTG 6673441
Score = 84.2 bits (92), Expect = 2e-11
Identities = 157/231 (68%), Gaps = 0/231 (0%)
Strand=Plus/Minus
Query 48496 AAAACCTCCGCGCAACCTTAACACTAAATGAAGTGTGCTCTCCTTTTGAATGTTGTAATC 48555
|| |||||| | || | | ||| | ||| || ||| |||||| || |||||||||||
Sbjct 4060268 AACACCTCCTCTCAGGCGGAGCACCAGATGCAGGGTGGACTCCTTCTGGATGTTGTAATC 4060209
Query 48556 AGCCAATTGTCGCTCGTCCTCCAGCTGCTTACCGCCGTAAATTAAACGCTGCTGATCCAC 48615
|| | ||| | || ||||||||||| || | | || | | |||||| ||
Sbjct 4060208 AGAGAGGGTGCGCCCATCTTCCAGCTGCTTGCCAGCAAAGATCAGCCTCTGCTGGTCAGG 4060149
Query 48616 CGGCACACTTTCCTTGTCCATAATTTTCTGCTTGATAGACGCTATGGTATCGGTAGACTC 48675
|| | | |||||||||| || || ||||| | | ||||| ||| | | |||
Sbjct 4060148 GGGTATGCCTTCCTTGTCCTGGATCTTGGCCTTGACGTTCTCAATGGTGTCGCTGGGCTC 4060089
Query 48676 CGTCTCGACTGTTATGGTTTTACCGGTGAGAGTTTTCACAAAAATCTGCAT 48726
| ||||| || ||||| || || ||||| || ||||| || ||||||||
Sbjct 4060088 CACCTCGAGGGTGATGGTCTTGCCAGTGAGGGTCTTCACGAAGATCTGCAT 4060038
>seq29
Length=19401444
Score = 84.2 bits (92), Expect = 2e-11
Identities = 150/219 (68%), Gaps = 0/219 (0%)
Strand=Plus/Minus
Query 48512 CTTAACACTAAATGAAGTGTGCTCTCCTTTTGAATGTTGTAATCAGCCAATTGTCGCTCG 48571
|| ||||| | || ||| || ||||||||||||||||||||||| ||| || |
Sbjct 6047438 CTCAACACAAGATTAAGAGTAGACTCCTTTTGAATGTTGTAATCAGACAAGGTACGTCCA 6047379
Query 48572 TCCTCCAGCTGCTTACCGCCGTAAATTAAACGCTGCTGATCCACCGGCACACTTTCCTTG 48631
|| |||||||||||||| | | || | | |||||||| || | | ||||||
Sbjct 6047378 TCTTCCAGCTGCTTACCAGCAAAGATCAGCCTTTGCTGATCAGAAGGAATTCCTTCCTTA 6047319
Query 48632 TCCATAATTTTCTGCTTGATAGACGCTATGGTATCGGTAGACTCCGTCTCGACTGTTATG 48691
||| || || ||| | | |||| || || | | || ||||| || |||
Sbjct 6047318 TCCTGGATCTTGGCCTTTACATTTTCTATAGTGTCCGAGGGTTCAACCTCGAGCGTGATG 6047259
Query 48692 GTTTTACCGGTGAGAGTTTTCACAAAAATCTGCATCGTG 48730
|| || || || || |||||||| |||||||||||| ||
Sbjct 6047258 GTCTTCCCCGTAAGGGTTTTCACGAAAATCTGCATCTTG 6047220
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 421214568917135
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |