Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Octodon_20degus_20[refseq_20GCF_5F000260255.1_202012-05-01] 7,135 sequences; 2,995,889,303 total letters Query= NC_005902.1 Length=186250 Score E Sequences producing significant alignments: (Bits) Value seq168 127 2e-24 seq33 82.4 9e-11 >seq168 Length=6074916 Score = 127 bits (140), Expect = 2e-24 Identities = 467/724 (65%), Gaps = 18/724 (2%) Strand=Plus/Plus Query 164393 ATTGGAATTTTGAAGAAATGGGAGTAGGTGGACTAGATCGAGAATTTTCTCTTATTTTCA 164452 ||| ||| |||||| |||||||| |||| || || || |||||||||| ||||||| Sbjct 4905530 ATTAGAACTTTGAAAAAATGGGAATAGGAGGGCTGGACAGAGAATTTTCAGATATTTTCC 4905589 Query 164453 GACGAGCATTTGCTTCTAGATCAGTTCCTATCGAAATAATaaaaaaaTTAGGCTGTAAAC 164512 || |||||||||||| ||| | |||| || || | | | | || ||||||| Sbjct 4905590 AACAAGCATTTGCTTCCAGAGTATTTCCACCAGAGATTGTGGAGCAGATGGGATGTAAAC 4905649 Query 164513 ATATAAAAGGAATTTTATTACATGGACCTCCTGGTTGCGGTAAAACATTAATGGCTCGAT 164572 || | ||||| || | ||| |||| | |||||||| ||||| || | |||||||| Sbjct 4905650 ATGTGAAAGGCATCCTGTTATATGGGCACCCTGGTTGTGGTAAGACCCTCTTGGCTCGAC 4905709 Query 164573 GCATTGCTCAAGCTTTTAAAT---CGCGACCCGTTAAAATTGTTAATGGTCCTGAATTAT 164629 |||| |||| | || ||| | || || ||| | || ||||| || ||| | Sbjct 4905710 AGATTG-GCAAGATGTTGAATGCAAGAGAGCC--CAAAGTGGTCAATGGACCAGAAATCC 4905766 Query 164630 TGAACAAATATGTAGGTGAGTCAGAAGCTAATGTTAGAAAGTTGTTTCAGGAGGCTGAAG 164689 | ||||| ||||| ||||| || || || || || | ||| | ||| || ||||||| Sbjct 4905767 TTAACAAGTATGTGGGTGAATCCGAGGCGAACATTCGCAAGCTTTTTGCTGATGCTGAAG 4905826 Query 164690 AAGAACAAAAGAAAGCAGGTTTAGCTAGTAAATTACATGTTATTGTTTTTGATGAGATAG 164749 | || |||| || ||| ||| || || | || | |||||||| || | Sbjct 4905827 AGGAGCAAAGGAGGCTTGGTGCGAACAGTGGTTTGCACATCATCATCTTTGATGAAATTG 4905886 Query 164750 ATGC--TCTT--TGCAAA----AAACGTGG-TGATAATATT---ATTCATGATGCAGTGG 164797 |||| |||| ||| | || | ||| || | | | |||| | | || Sbjct 4905887 ATGCCATCTTCAAGCAGAGAGGAAGCATGGCTGGCAGCACTGGAGTTCACAACACTGTCA 4905946 Query 164798 TTAATCAGTTGCTTTCTAAAATAGATGGTGTAGAATCCTTAAATAATATTTTAATTGTAG 164857 | |||||| || | || ||||| |||| ||||| | || || || || | | Sbjct 4905947 TCAATCAGCTGTTGTCCAAAATCAATGGGGTAGAGCAGCTGAACAACATCCTAGTCACTG 4906006 Query 164858 GTATGACCAACCGACCTGATTTAATTGATGATGCTTTATTACGACCTGGTCGATTAGAAT 164917 |||||||| || | ||| | || ||||| ||| | | |||||||| || | ||| Sbjct 4906007 AAATGACCAATAGATCAGATCTGATAGATGAAGCTCTCCTTCGACCTGGAAGACTGGAAG 4906066 Query 164918 TGAAAATAGAAATAGGATTACCCGACAAAGAAGGACGCCTTCAAATTTTAAAAGTTCATG 164977 | ||||| || |||| ||||| || || |||| || || || || | | | ||| Sbjct 4906067 TCAAAATGGAGATAGACTTACCAGATGAAAAAGGTCGACTACAGATCCTTCACATCCATA 4906126 Query 164978 TGGCTAAAATGAAATCCTGTGATATATTATCTCCCGATGTAGATTTAAATAAAATAGCTG 165037 || | |||| | | | | || | ||| | ||||| || | || | | |||| Sbjct 4906127 CAGCGAGGATGAGAGACCATCAGTTACTCTCTACTGATGTGGACATTAAAGAGCTGGCTG 4906186 Query 165038 CCGAAACTAAAAATTATAGTGGTGCTGAATTAGAGGGATTAGTAAGAGCCGCTCAATCAA 165097 || || || || | ||||||||||| | ||||| | || |||| || || || | Sbjct 4906187 TGGAGACCAAGAACTTCAGTGGTGCTGAGCTGGAGGGTCTGGTGCGAGCAGCACAGTCCA 4906246 Query 165098 CCGC 165101 | || Sbjct 4906247 CTGC 4906250 >seq33 Length=18282273 Score = 82.4 bits (90), Expect = 9e-11 Identities = 71/88 (81%), Gaps = 0/88 (0%) Strand=Plus/Minus Query 164393 ATTGGAATTTTGAAGAAATGGGAGTAGGTGGACTAGATCGAGAATTTTCTCTTATTTTCA 164452 ||||||| |||||| |||||||| |||| || || || |||||||||| |||||| Sbjct 343264 ATTGGAACTTTGAAAAAATGGGAATAGGAGGTCTGGACAGAGAATTTTCAGATATTTTTC 343205 Query 164453 GACGAGCATTTGCTTCTAGATCAGTTCC 164480 |||||||||||||||| ||| | |||| Sbjct 343204 GACGAGCATTTGCTTCCAGAGTATTTCC 343177 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 595818855666000