Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Octodon_20degus_20[refseq_20GCF_5F000260255.1_202012-05-01] 7,135 sequences; 2,995,889,303 total letters Query= NC_006146.1 Length=171096 Score E Sequences producing significant alignments: (Bits) Value seq131 134 2e-26 >seq131 Length=8239869 Score = 134 bits (148), Expect = 2e-26 Identities = 115/142 (81%), Gaps = 0/142 (0%) Strand=Plus/Minus Query 10140 AGGGCTACCTGGGATGTCAGGCCCTGTCTGAAATGATCCAGTTTTACCTGGAGGAAGTAA 10199 |||| |||||||| || || ||| |||| || ||||||||||||||||||| || || | Sbjct 2014437 AGGGTTACCTGGGTTGCCAAGCCTTGTCAGAGATGATCCAGTTTTACCTGGTAGAGGTGA 2014378 Query 10200 TGCCACAGGCTGAAAATCAGGACCCCCACGCCAAAGAGCACGTGAACTCTCTGGGCGAGA 10259 |||| |||| || || || ||||| || ||| ||||| |||||||||||||| |||| Sbjct 2014377 TGCCCAAGGCAGAGAACCACGACCCAGACATCAAGGAGCATGTGAACTCTCTGGGGGAGA 2014318 Query 10260 ATCTAAAGACCCTAAGGCTTCG 10281 | || |||||||| |||||||| Sbjct 2014317 AGCTGAAGACCCTCAGGCTTCG 2014296 Score = 109 bits (120), Expect = 6e-19 Identities = 75/85 (88%), Gaps = 0/85 (0%) Strand=Plus/Minus Query 10359 AGCTGCAGGAAAAAGGAGTCTACAAAGCCATGAGTGAATTTGACATTTTTATTAACTATA 10418 |||| || |||||||| |||||||||||||||||||| |||||||| || || ||||||| Sbjct 2012235 AGCTCCAAGAAAAAGGTGTCTACAAAGCCATGAGTGAGTTTGACATCTTCATCAACTATA 2012176 Query 10419 TAGAAGCATACATGACCATGAAAAT 10443 ||||||| |||||||| ||||||| Sbjct 2012175 TAGAAGCCTACATGACACTGAAAAT 2012151 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 547330380617600