Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Octodon_20degus_20[refseq_20GCF_5F000260255.1_202012-05-01] 7,135 sequences; 2,995,889,303 total letters Query= NC_006150.1 Length=221454 Score E Sequences producing significant alignments: (Bits) Value seq188 156 6e-33 seq138 122 1e-22 seq137 120 4e-22 >seq188 Length=5414077 Score = 156 bits (172), Expect = 6e-33 Identities = 206/286 (72%), Gaps = 0/286 (0%) Strand=Plus/Minus Query 8690 AACGGACACCCTTTGACGTTGCTACAGACTAGAGACTGGATAGTTGCACTCTTGACGATC 8749 || ||||| || || || || || |||| || ||||| || | || | |||| |||| Sbjct 4139640 AAAGGACAGCCCTTCACATTTCTGCAGATCAGGGACTGAATGGAGGCTGTGTTGATGATC 4139581 Query 8750 CCAAACCCCACGTCTCCGCCGAAGGTGCTGGGTTTCCAGTAACCCGGGGAGCAGATGACG 8809 |||| ||||| ||||| || || || || ||||||||||| || ||||| || | Sbjct 4139580 TCAAAACCCACTTCTCCTCCAAAAGTACTTGGTTTCCAGTACTGTGGCGAGCATATAGGG 4139521 Query 8810 TTCGCCATGAGGCCTTTGAGGGAAAACGGAGCCCCCAGCTCGAGAATGCTCTCACCGAAG 8869 || ||| ||| ||||| | ||| || || || |||| ||| | || ||||||| ||| Sbjct 4139520 TTACCCAGGAGTCCTTTCAAGGAGAATGGTGCTCCCATCTCTACCATCGTCTCACCAAAG 4139461 Query 8870 ATGGCGTTGGGACGGGGCTTTTCCACCAAGAATCCGGTGTACAACTCCACAGCCTCGATG 8929 || || | || || ||||||||||||| | | | |||| ||||||||| || ||| Sbjct 4139460 ATAGCATCTGGTCGAGGCTTTTCCACCAGAAGGGCAGGATACAGCTCCACAGCATCAATG 4139401 Query 8930 TCTCCGTAAAGGGCCCTGAGTTCGGCAGCGATTTCCTTTTCTCCTG 8975 || ||||| ||||| | ||| |||| |||||||| ||||||| Sbjct 4139400 TCACCGTACAGGGCTTCCAACTCGCCAGCCATTTCCTTCTCTCCTG 4139355 Score = 134 bits (148), Expect = 2e-26 Identities = 158/214 (74%), Gaps = 0/214 (0%) Strand=Plus/Minus Query 9649 TCGTCACTCCATTCTGGATGTTCTCGTTTCAGAACATCGCACACTCTGTTGTGTTCCCTG 9708 || ||| ||| || |||||||| | || || || || ||||||||||||||||||| Sbjct 4137642 TCATCATCCCACTCCGGATGTTCCTGCTTAAGCACGTCACACACTCTGTTGTGTTCCCGC 4137583 Query 9709 AGCCAGATAGTAGCGTACATCATGAGACCAGGCACCAGGCCAAAAGCCTCTTGACCGACA 9768 |||||||| || || |||||||| ||||| ||||| |||||||| |||| || || || Sbjct 4137582 AGCCAGATGGTGGCATACATCATCAGACCGGGCACGAGGCCAAAGACCTCCTGGCCCACC 4137523 Query 9769 GCCAGACGCATATTTTCGGGCACTTCGGGAGGATAGATCATGTGCACCTGGACATCTTTG 9828 || | ||| || ||||| || | || || |||||||| | || ||| |||||| Sbjct 4137522 GCGAAGCGCGCATGCTCGGGGACATGGGCTGGGTAGATCATCTCTACTTGGGTGTCTTTG 4137463 Query 9829 ACCGAGGGGGGATACATTTCACCGTCAATAATCT 9862 | ||| || ||||| || || ||||| |||| Sbjct 4137462 GTGGTGGGAGGGTACATCTCCCCATCAATTATCT 4137429 Score = 118 bits (130), Expect = 2e-21 Identities = 186/264 (70%), Gaps = 2/264 (1%) Strand=Plus/Minus Query 9322 CTTACTCGGCCAGCTATTTGTTTCGTGAACGATTCTACTAGCTGGGTAATGCCGTGGGTC 9381 ||||| | |||||| ||||| || ||||| ||||| || | |||||||| || || | Sbjct 4138404 CTTACCCTGCCAGCAATTTGCTTGGTGAATGATTCCACAAACTGGGTAAGTCCATGTTCC 4138345 Query 9382 ATGAGTATGGAATTGTTGTAAACGAAGTTAATGTA-GTCATACTTTGTTTTATCAATCTC 9440 | | ||| || |||||| | | ||| || || | |||||||| | | |||||| | Sbjct 4138344 AATAATATAGAGTTGTTGAAGA-GAAATTGCTGAAAGTCATACTCTTGGTCATCAATTTG 4138286 Query 9441 AAACGCATCCGGCATGAGAGAATGCCAGTGATACAACATGTTAAACTCGGAAAATATACG 9500 || | || |||| || | |||||||||||| | | |||| |||||||| || || Sbjct 4138285 GAAGGTGTCGGGCAGAAGGGGATGCCAGTGATAGAGCGTGTTGAACTCGGACGCAATGCG 4138226 Query 9501 ATTTTGGTACTGGAACGAAGTACCAAAGAGCAGTTCGGGCTTAAACAGCAACTGAAAGTG 9560 || |||||||||||| | |||||||| || || | |||| || || ||||| Sbjct 4138225 GTTCTGGTACTGGAACTGCTGGCTGAAGAGCAGCTCTGGGTCAAACTTCAGCTTGAAGTG 4138166 Query 9561 GTAGCCGCTGAGCTGCTGAACATA 9584 || ||||| | ||||| ||||| Sbjct 4138165 ATATCCGCTCAAGTGCTGCACATA 4138142 Score = 98.7 bits (108), Expect = 1e-15 Identities = 116/157 (74%), Gaps = 0/157 (0%) Strand=Plus/Minus Query 10029 CTTACCCCATGTCCCAGTCCTTTAGTGAAGGCCGGGCCTCGCGCCAAATCAGTCCTAAAA 10088 ||||||||||| |||| ||| | ||||| ||||| ||||| ||||| | | ||| Sbjct 4136531 CTTACCCCATGGGCCAGGCCTGTGGTGAAAGCCGGTCCTCGTTTTTGATCAGACTTGAAA 4136472 Query 10089 AACTGGTGCGTGAAATGTTGGCCAAAAAAGGCAAACATTAAGTTGGTGCCCTGGGGATCG 10148 ||||| || |||||||| ||| | || || || ||||| | ||| ||||| || || || Sbjct 4136471 AACTGATGGGTGAAATGCTGGGCGAAGAAAGCGAACATCATGTTTGTGCCTTGCGGGTCA 4136412 Query 10149 GGAGTGAAGGTCCTCCGAAGAAGAGTTTTTTCCACAA 10185 || |||| |||| | |||||| |||||||| || Sbjct 4136411 GGGATGAACTTCCTTCTTAGAAGAACTTTTTCCAGAA 4136375 >seq138 Length=7537758 Score = 122 bits (134), Expect = 1e-22 Identities = 199/287 (69%), Gaps = 0/287 (0%) Strand=Plus/Plus Query 8690 AACGGACACCCTTTGACGTTGCTACAGACTAGAGACTGGATAGTTGCACTCTTGACGATC 8749 || ||||| || || || || || |||| || ||||| || || | |||| |||| Sbjct 3102479 AAAGGACAACCCTTCACATTTCTGCAGATCAGGGACTGAATGAAAGCTGTGTTGATGATC 3102538 Query 8750 CCAAACCCCACGTCTCCGCCGAAGGTGCTGGGTTTCCAGTAACCCGGGGAGCAGATGACG 8809 |||| ||||| ||||| || | || || || |||||||| | || ||||| || | Sbjct 3102539 TCAAAGCCCACTTCTCCTCCAGAAGTACTTGGCTTCCAGTACCGTGGCGAGCATATAGGG 3102598 Query 8810 TTCGCCATGAGGCCTTTGAGGGAAAACGGAGCCCCCAGCTCGAGAATGCTCTCACCGAAG 8869 || | ||| ||| | | ||| || || || |||| ||| | || ||||||||||| Sbjct 3102599 TTAATCCGGAGTCCTGTCAAGGAGAAAGGTGCTCCCATCTCTACCATCGTCTCACCGAAG 3102658 Query 8870 ATGGCGTTGGGACGGGGCTTTTCCACCAAGAATCCGGTGTACAACTCCACAGCCTCGATG 8929 || || | || | ||||||||||||| | | |||| ||||| ||| || || Sbjct 3102659 ATAGCATGTGGCCAAGGCTTTTCCACCAGAAGGGCAAGATACAGCTCCATAGCATCAGTG 3102718 Query 8930 TCTCCGTAAAGGGCCCTGAGTTCGGCAGCGATTTCCTTTTCTCCTGT 8976 || ||||| ||||| | ||||||||| | |||||| ||||| || Sbjct 3102719 TCACCGTAGAGGGCTTCCAATTCGGCAGCCACTTCCTTCTCTCCAGT 3102765 >seq137 Length=7823544 Score = 120 bits (132), Expect = 4e-22 Identities = 165/231 (71%), Gaps = 0/231 (0%) Strand=Plus/Minus Query 8707 GTTGCTACAGACTAGAGACTGGATAGTTGCACTCTTGACGATCCCAAACCCCACGTCTCC 8766 |||| |||||| || ||| | || || | ||||| || || ||||| || || Sbjct 7316247 GTTGAGACAGACCAGCTTCTGCAGTGTGGCTGTGTTGACAATGTTGAAGCCCACCTCACC 7316188 Query 8767 GCCGAAGGTGCTGGGTTTCCAGTAACCCGGGGAGCAGATGACGTTCGCCATGAGGCCTTT 8826 || || ||||| || |||||||| | || || |||||| ||| ||| ||| || || Sbjct 7316187 ACCAAATGTGCTTGGCTTCCAGTACTCTGGAGAACAGATGGGATTCCCCAGGAGCCCCTT 7316128 Query 8827 GAGGGAAAACGGAGCCCCCAGCTCGAGAATGCTCTCACCGAAGATGGCGTTGGGACGGGG 8886 ||||||||| || ||||||| ||||| || ||||| || ||||||| ||| || || Sbjct 7316127 GAGGGAAAAGGGGGCCCCCATCTCGATCATACTCTCTCCAAAGATGGAGTTCGGTAGGCA 7316068 Query 8887 CTTTTCCACCAAGAATCCGGTGTACAACTCCACAGCCTCGATGTCTCCGTA 8937 ||||| | | ||||| | ||| ||||| | || ||||||||||| || Sbjct 7316067 TTTTTCAAGAAGCAATCCCGGGTAGAACTCTAAGGCATCGATGTCTCCATA 7316017 Score = 95.1 bits (104), Expect = 2e-14 Identities = 105/138 (76%), Gaps = 4/138 (3%) Strand=Plus/Minus Query 10029 CTTACCCCATGTCCCAGTCCTTTAGTGAAGGCCGGGCC--TCGCGCCAAATCAGTCCTAA 10086 ||||||||||| |||| | || |||||| | || || || |||| | |||| ||| Sbjct 7306047 CTTACCCCATGGCCCAAGGCCTTGGTGAAGCCAGGCCCCATCTTGCCAGA--AGTCTTAA 7305990 Query 10087 AAAACTGGTGCGTGAAATGTTGGCCAAAAAAGGCAAACATTAAGTTGGTGCCCTGGGGAT 10146 | |||||||| ||||| ||||| |||| ||||||||||| | ||| ||||| ||||| | Sbjct 7305989 AGAACTGGTGGGTGAAGTGTTGTGCAAAGAAGGCAAACATGAGGTTCGTGCCTTGGGGGT 7305930 Query 10147 CGGGAGTGAAGGTCCTCC 10164 | || |||| |||||| Sbjct 7305929 CAGGGATGAATTTCCTCC 7305912 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 708461608444400