Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Octodon_20degus_20[refseq_20GCF_5F000260255.1_202012-05-01] 7,135 sequences; 2,995,889,303 total letters Query= NC_006639.1 Length=24748 Score E Sequences producing significant alignments: (Bits) Value seq48 161 2e-35 seq119 152 8e-33 seq12 118 2e-22 >seq48 Length=14429822 Score = 161 bits (178), Expect = 2e-35 Identities = 195/263 (74%), Gaps = 2/263 (1%) Strand=Plus/Minus Query 16432 CGCTAAGCGTCATCGCAGATCTCTT-CGAGATAACATCCAAGGAATCACCAAGCCAGCTA 16490 |||||| || || || | | |||| |||||||||||||| ||||| || ||||| |||| Sbjct 11586258 CGCTAAACGCCACCGTA-AGGTCTTGCGAGATAACATCCAGGGAATTACAAAGCCCGCTA 11586200 Query 16491 TCCGTCGTCTGGCTCGTCGTGGTGGAGTCAAGCGTGTCTCTGGATTGGTCTATGAAGAGA 16550 | |||||||| ||||| ||||| || |||||||| | ||||| | |||| || |||| Sbjct 11586199 TACGTCGTCTCGCTCGCCGTGGCGGTGTCAAGCGGATTTCTGGTCTCATCTACGAGGAGA 11586140 Query 16551 TTCGTGATGTTTTGAAGATCTTCCTCAAGACCGTTATCCATGATGCTTTCCACTATACCG 16610 || | ||| ||||| | || || ||| ||| |||| ||| || || ||| |||| Sbjct 11586139 CCCGGGGTGTCCTGAAGGTGTTTCTGGAGAACGTCATCCGTGACGCCGTCACCTACACCG 11586080 Query 16611 AGCACGCTAAACGTAAGACTGTCACCTCCATGGATATCGTCTATGCATTGAAACGTCAAG 16670 ||||||| || || ||||| |||||| ||||||| | ||||| || | || || || | Sbjct 11586079 AGCACGCGAAGCGCAAGACCGTCACCGCCATGGACGTGGTCTACGCGCTCAAGCGCCAGG 11586020 Query 16671 GCCGTAAGATTTATGGTTTTGGA 16693 |||| | | || || |||||| Sbjct 11586019 GCCGCACCCTGTACGGCTTTGGA 11585997 >seq119 Length=9167744 Score = 152 bits (168), Expect = 8e-33 Identities = 195/269 (72%), Gaps = 0/269 (0%) Strand=Plus/Minus Query 16432 CGCTAAGCGTCATCGCAGATCTCTTCGAGATAACATCCAAGGAATCACCAAGCCAGCTAT 16491 ||| |||||||| |||| || || || |||||||| || ||||||||||| || || Sbjct 851206 CGCCAAGCGTCACCGCAAGGTGCTGCGCGACAACATCCAGGGCATCACCAAGCCCGCCAT 851147 Query 16492 CCGTCGTCTGGCTCGTCGTGGTGGAGTCAAGCGTGTCTCTGGATTGGTCTATGAAGAGAT 16551 ||| || ||||| || || || || |||||||| |||| ||| | |||| || |||| Sbjct 851146 CCGCCGCCTGGCCCGGCGCGGCGGCGTCAAGCGCATCTCCGGACTCATCTACGAGGAGAC 851087 Query 16552 TCGTGATGTTTTGAAGATCTTCCTCAAGACCGTTATCCATGATGCTTTCCACTATACCGA 16611 || | || | ||| ||||||| ||| ||| |||| || || || ||| || || Sbjct 851086 GCGCGGGGTGCTCAAGGTCTTCCTGGAGAACGTCATCCGCGACGCCGTCACCTACACGGA 851027 Query 16612 GCACGCTAAACGTAAGACTGTCACCTCCATGGATATCGTCTATGCATTGAAACGTCAAGG 16671 |||||| || || ||||| |||||| ||||||| | |||||||| | || || || || Sbjct 851026 GCACGCCAAGCGCAAGACGGTCACCGCCATGGACGTGGTCTATGCGCTCAAGCGCCAGGG 850967 Query 16672 CCGTAAGATTTATGGTTTTGGAAGTTAAT 16700 || | | | ||||| ||||| | |||| Sbjct 850966 GCGCACGCTGTATGGCTTTGGTGGCTAAT 850938 Score = 136 bits (150), Expect = 6e-28 Identities = 194/273 (71%), Gaps = 0/273 (0%) Strand=Plus/Plus Query 16432 CGCTAAGCGTCATCGCAGATCTCTTCGAGATAACATCCAAGGAATCACCAAGCCAGCTAT 16491 ||| ||||| || |||| || || || |||||||| || ||||||||||| || || Sbjct 914411 CGCCAAGCGCCACCGCAAGGTGCTGCGCGACAACATCCAGGGCATCACCAAGCCCGCCAT 914470 Query 16492 CCGTCGTCTGGCTCGTCGTGGTGGAGTCAAGCGTGTCTCTGGATTGGTCTATGAAGAGAT 16551 ||| || ||||| || ||||| || || ||||| |||| ||| | |||| || |||| Sbjct 914471 CCGCCGCCTGGCCCGGCGTGGCGGCGTGAAGCGCATCTCCGGACTCATCTACGAGGAGAC 914530 Query 16552 TCGTGATGTTTTGAAGATCTTCCTCAAGACCGTTATCCATGATGCTTTCCACTATACCGA 16611 || | || | ||| ||||||| ||| ||| |||| || || || ||| || || Sbjct 914531 GCGCGGGGTGCTCAAGGTCTTCCTGGAGAACGTCATCCGCGACGCCGTCACCTACACGGA 914590 Query 16612 GCACGCTAAACGTAAGACTGTCACCTCCATGGATATCGTCTATGCATTGAAACGTCAAGG 16671 |||||| || || ||||| |||||| ||||||| | ||||| || | || || || || Sbjct 914591 GCACGCCAAGCGCAAGACGGTCACCGCCATGGACGTGGTCTACGCGCTCAAGCGCCAGGG 914650 Query 16672 CCGTAAGATTTATGGTTTTGGAAGTTAATCTTC 16704 || | | | || || || ||| | || |||| Sbjct 914651 ACGCACGCTCTACGGCTTCGGAGGCTAGACTTC 914683 Score = 132 bits (146), Expect = 8e-27 Identities = 192/271 (71%), Gaps = 0/271 (0%) Strand=Plus/Minus Query 16432 CGCTAAGCGTCATCGCAGATCTCTTCGAGATAACATCCAAGGAATCACCAAGCCAGCTAT 16491 ||| ||||| || |||| || || || |||||||| || ||||||||||| || || Sbjct 731617 CGCCAAGCGGCACCGCAAGGTGCTGCGCGACAACATCCAGGGCATCACCAAGCCCGCCAT 731558 Query 16492 CCGTCGTCTGGCTCGTCGTGGTGGAGTCAAGCGTGTCTCTGGATTGGTCTATGAAGAGAT 16551 ||| || ||||| || || || || |||||||| | || || | |||| || |||| Sbjct 731557 CCGCCGCCTGGCCCGGCGCGGCGGCGTCAAGCGCATTTCCGGTCTCATCTACGAGGAGAC 731498 Query 16552 TCGTGATGTTTTGAAGATCTTCCTCAAGACCGTTATCCATGATGCTTTCCACTATACCGA 16611 || | || | ||| ||||||| ||| ||| |||| || || || ||| || || Sbjct 731497 GCGCGGGGTGCTCAAGGTCTTCCTGGAGAACGTCATCCGCGACGCCGTCACCTACACAGA 731438 Query 16612 GCACGCTAAACGTAAGACTGTCACCTCCATGGATATCGTCTATGCATTGAAACGTCAAGG 16671 |||||| || || ||||| |||||| ||||||| | ||||| || | || || || || Sbjct 731437 GCACGCCAAGCGCAAGACGGTCACCGCCATGGACGTGGTCTACGCGCTCAAGCGCCAGGG 731378 Query 16672 CCGTAAGATTTATGGTTTTGGAAGTTAATCT 16702 || | | | || || || ||| ||||| || Sbjct 731377 ACGCACGCTCTACGGCTTCGGAGGTTAAGCT 731347 Score = 132 bits (146), Expect = 8e-27 Identities = 190/268 (71%), Gaps = 0/268 (0%) Strand=Plus/Plus Query 16432 CGCTAAGCGTCATCGCAGATCTCTTCGAGATAACATCCAAGGAATCACCAAGCCAGCTAT 16491 ||| ||||| || |||| || || || ||||| || || ||||||||||| || || Sbjct 770179 CGCCAAGCGCCACCGCAAGGTGCTGCGCGACAACATTCAGGGCATCACCAAGCCCGCCAT 770238 Query 16492 CCGTCGTCTGGCTCGTCGTGGTGGAGTCAAGCGTGTCTCTGGATTGGTCTATGAAGAGAT 16551 ||| || ||||| || || || || |||||||| |||| ||| | |||| || |||| Sbjct 770239 CCGCCGCCTGGCCCGGCGCGGCGGCGTCAAGCGCATCTCCGGACTCATCTACGAGGAGAC 770298 Query 16552 TCGTGATGTTTTGAAGATCTTCCTCAAGACCGTTATCCATGATGCTTTCCACTATACCGA 16611 ||| | || | ||| ||||||| ||| ||| || | || || || ||| || || Sbjct 770299 TCGCGGGGTGCTCAAGGTCTTCCTGGAGAACGTCATTCGCGACGCCGTCACCTACACGGA 770358 Query 16612 GCACGCTAAACGTAAGACTGTCACCTCCATGGATATCGTCTATGCATTGAAACGTCAAGG 16671 |||||| || || ||||| |||||| ||||||| | ||||| || | || || || || Sbjct 770359 GCACGCCAAGCGCAAGACGGTCACCGCCATGGACGTGGTCTACGCGCTTAAGCGCCAGGG 770418 Query 16672 CCGTAAGATTTATGGTTTTGGAAGTTAA 16699 |||| | || || || || ||||| Sbjct 770419 TCGTACACTGTACGGCTTCGGCGGTTAA 770446 Score = 132 bits (146), Expect = 8e-27 Identities = 186/261 (71%), Gaps = 0/261 (0%) Strand=Plus/Minus Query 16432 CGCTAAGCGTCATCGCAGATCTCTTCGAGATAACATCCAAGGAATCACCAAGCCAGCTAT 16491 ||| ||||| || |||| || || || |||||||| || ||||||||||| || || Sbjct 918760 CGCCAAGCGCCACCGCAAGGTGCTGCGCGACAACATCCAGGGCATCACCAAGCCCGCCAT 918701 Query 16492 CCGTCGTCTGGCTCGTCGTGGTGGAGTCAAGCGTGTCTCTGGATTGGTCTATGAAGAGAT 16551 ||| || ||||| || ||||| || || ||||| |||| ||| | |||| || |||| Sbjct 918700 CCGCCGCCTGGCCCGGCGTGGCGGCGTGAAGCGCATCTCCGGACTCATCTACGAGGAGAC 918641 Query 16552 TCGTGATGTTTTGAAGATCTTCCTCAAGACCGTTATCCATGATGCTTTCCACTATACCGA 16611 || | || | ||| ||||||| ||| ||| |||| || || || ||| || || Sbjct 918640 GCGCGGGGTGCTCAAGGTCTTCCTGGAGAACGTCATCCGCGACGCCGTCACCTACACGGA 918581 Query 16612 GCACGCTAAACGTAAGACTGTCACCTCCATGGATATCGTCTATGCATTGAAACGTCAAGG 16671 |||||| || || ||||| |||||| ||||||| | ||||| || | || || || || Sbjct 918580 GCACGCCAAGCGCAAGACGGTCACCGCCATGGACGTGGTCTACGCGCTCAAGCGCCAGGG 918521 Query 16672 CCGTAAGATTTATGGTTTTGG 16692 || | | | || || || || Sbjct 918520 ACGCACGCTCTACGGCTTCGG 918500 Score = 129 bits (142), Expect = 9e-26 Identities = 185/261 (71%), Gaps = 0/261 (0%) Strand=Plus/Plus Query 16432 CGCTAAGCGTCATCGCAGATCTCTTCGAGATAACATCCAAGGAATCACCAAGCCAGCTAT 16491 ||| ||||| || |||| || || || |||||||| || ||||||||||| || || Sbjct 682716 CGCCAAGCGCCACCGCAAGGTGCTGCGCGACAACATCCAGGGCATCACCAAGCCCGCCAT 682775 Query 16492 CCGTCGTCTGGCTCGTCGTGGTGGAGTCAAGCGTGTCTCTGGATTGGTCTATGAAGAGAT 16551 ||| || ||||| || || || || |||||||| |||| || | |||| || |||| Sbjct 682776 CCGCCGCCTGGCCCGGCGCGGCGGCGTCAAGCGCATCTCCGGTCTCATCTACGAGGAGAC 682835 Query 16552 TCGTGATGTTTTGAAGATCTTCCTCAAGACCGTTATCCATGATGCTTTCCACTATACCGA 16611 || | || | ||| ||||||| ||| ||| |||| || || || ||| || || Sbjct 682836 GCGCGGGGTGCTCAAGGTCTTCCTGGAGAACGTCATCCGCGACGCCGTCACCTACACGGA 682895 Query 16612 GCACGCTAAACGTAAGACTGTCACCTCCATGGATATCGTCTATGCATTGAAACGTCAAGG 16671 |||||| || || ||||| |||||| ||||||| | ||||| || | || || || || Sbjct 682896 GCACGCCAAGCGCAAGACGGTCACCGCCATGGACGTGGTCTACGCGCTCAAGCGCCAGGG 682955 Query 16672 CCGTAAGATTTATGGTTTTGG 16692 || | | | || || || || Sbjct 682956 ACGCACGCTCTACGGCTTCGG 682976 Score = 129 bits (142), Expect = 9e-26 Identities = 172/239 (72%), Gaps = 0/239 (0%) Strand=Plus/Minus Query 16454 CTTCGAGATAACATCCAAGGAATCACCAAGCCAGCTATCCGTCGTCTGGCTCGTCGTGGT 16513 || || || |||||||| || ||||||||||| || ||||| || ||||| || || || Sbjct 751569 CTGCGCGACAACATCCAGGGCATCACCAAGCCCGCCATCCGCCGCCTGGCCCGGCGCGGC 751510 Query 16514 GGAGTCAAGCGTGTCTCTGGATTGGTCTATGAAGAGATTCGTGATGTTTTGAAGATCTTC 16573 || |||||||| |||| ||| | |||| || |||| ||| | || | ||| ||||| Sbjct 751509 GGCGTCAAGCGCATCTCCGGACTCATCTACGAGGAGACTCGCGGGGTGCTCAAGGTCTTC 751450 Query 16574 CTCAAGACCGTTATCCATGATGCTTTCCACTATACCGAGCACGCTAAACGTAAGACTGTC 16633 | ||| ||| |||| || || || ||| || |||||||| || || ||||| ||| Sbjct 751449 TTGGAGAACGTCATCCGCGACGCCGTCACCTACACGGAGCACGCCAAGCGCAAGACGGTC 751390 Query 16634 ACCTCCATGGATATCGTCTATGCATTGAAACGTCAAGGCCGTAAGATTTATGGTTTTGG 16692 ||| ||||||| | ||||| || | || || || || || | | | || || || || Sbjct 751389 ACCGCCATGGACGTGGTCTACGCGCTCAAGCGCCAGGGACGCACGCTCTACGGCTTCGG 751331 >seq12 Length=28755977 Score = 118 bits (130), Expect = 2e-22 Identities = 174/244 (71%), Gaps = 2/244 (1%) Strand=Plus/Minus Query 16432 CGCTAAGCGTCATCGCA-GATCTCTTCGAGATAACATCCAAGGAATCACCAAGCCAGCTA 16490 ||||||||| || |||| | || || ||||| |||||||| || || || ||||| || | Sbjct 5481765 CGCTAAGCGCCACCGCAAGGTC-CTGCGAGACAACATCCAGGGCATTACAAAGCCTGCGA 5481707 Query 16491 TCCGTCGTCTGGCTCGTCGTGGTGGAGTCAAGCGTGTCTCTGGATTGGTCTATGAAGAGA 16550 | || ||||| || || || || || |||||||| |||| || | | ||||| || | Sbjct 5481706 TTCGCCGTCTCGCCCGCCGAGGAGGGGTCAAGCGCATCTCCGGGCTTATTTATGAGGAAA 5481647 Query 16551 TTCGTGATGTTTTGAAGATCTTCCTCAAGACCGTTATCCATGATGCTTTCCACTATACCG 16610 || | || | ||| | || || ||| ||| |||| ||||| | ||| |||| Sbjct 5481646 CCCGGGGAGTGCTTAAGGTGTTTCTGGAGAACGTCATCCGCGATGCAGTGACCTACACCG 5481587 Query 16611 AGCACGCTAAACGTAAGACTGTCACCTCCATGGATATCGTCTATGCATTGAAACGTCAAG 16670 ||||||| || || ||||| ||||| ||||||| | || || || |||| || || | Sbjct 5481586 AGCACGCCAAGCGCAAGACCGTCACAGCCATGGACGTGGTGTACGCCCTGAAGCGCCAGG 5481527 Query 16671 GCCG 16674 |||| Sbjct 5481526 GCCG 5481523 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 79068676419555