Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Octodon_20degus_20[refseq_20GCF_5F000260255.1_202012-05-01] 7,135 sequences; 2,995,889,303 total letters Query= NC_006966.1 Length=166259 Score E Sequences producing significant alignments: (Bits) Value seq6919 84.2 2e-11 seq148 84.2 2e-11 seq187 82.4 8e-11 >seq6919 Length=1122 Score = 84.2 bits (92), Expect = 2e-11 Identities = 106/146 (73%), Gaps = 0/146 (0%) Strand=Plus/Minus Query 21122 TTTATTTAAAAATCAGCATCTAATGAGAAAACATTATCTTCtttttttGACATAATTCCC 21181 || ||||| || |||||||| || | ||| ||| ||| | ||||||| |||| Sbjct 629 TTCATTTAGAAGTCAGCATCCAAAGTAAAAGAATTCTCTGTGGGGCTGGACATAACTCCC 570 Query 21182 ATTTTTTGATAATCACTAACTCTTTTTTCGAAAAAATTTGTCTTTCCTTCCAATGATATA 21241 || | ||||| || | ||||| || || || || |||||||| ||||||| || ||| Sbjct 569 ATCCTCTGATACTCGCCCACTCTCTTCTCAAAGAAGTTTGTCTTCCCTTCCAGAGAAATA 510 Query 21242 GATTCCATAAAATCAAATGGATTTTC 21267 ||||| || |||||||||||||| Sbjct 509 TTCTCCATGAAGTCAAATGGATTTTC 484 >seq148 Length=7051472 Score = 84.2 bits (92), Expect = 2e-11 Identities = 103/141 (73%), Gaps = 0/141 (0%) Strand=Plus/Minus Query 21127 TTAAAAATCAGCATCTAATGAGAAAACATTATCTTCtttttttGACATAATTCCCATTTT 21186 ||||||||| ||||| || | ||| ||||||||| ||| || ||||| | | | Sbjct 5157241 TTAAAAATCTGCATCCAAAGTGAAGACATTATCTGTGGTTTCTGCCATAACTGCAAAACG 5157182 Query 21187 TTGATAATCACTAACTCTTTTTTCGAAAAAATTTGTCTTTCCTTCCAATGATATAGATTC 21246 || || || ||||| ||| || || |||||||| || ||||| || || || || Sbjct 5157181 CTGGTACTCTGAAACTCGTTTCTCAAAGAAATTTGTTTTCCCTTCTAAAGAAATGTTCTC 5157122 Query 21247 CATAAAATCAAATGGATTTTC 21267 |||||||||||| |||||||| Sbjct 5157121 CATAAAATCAAAGGGATTTTC 5157101 >seq187 Length=5094135 Score = 82.4 bits (90), Expect = 8e-11 Identities = 107/147 (73%), Gaps = 1/147 (1%) Strand=Plus/Plus Query 21122 TTTATTTAAAAATCAGCATCTAATGAGAAAACATTATCTTCtttttttGACATAATTCCC 21181 || |||||||| |||||||| | | ||| ||| || | ||||||| |||| Sbjct 4778 TTCATTTAAAAGTCAGCATCCCAAGTAAAAGAATTCTCCATAGGAATGGACATAACTCCC 4837 Query 21182 ATTTTTTGATAATCACTAACTCTTTTTTCGAAAAAATTTGTCTTTCCTTCCAATGATATA 21241 || | ||||| |||| |||| | || || || || |||||||| |||||||| || ||| Sbjct 4838 ATAGTCTGATACTCACCAACTATCTTCTCAAAGAAGTTTGTCTTCCCTTCCAAAGAAATA 4897 Query 21242 GAT-TCCATAAAATCAAATGGATTTTC 21267 | || || || |||||||||||||| Sbjct 4898 TTTCTCTATGAAGTCAAATGGATTTTC 4924 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 531853361097400