Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Octodon_20degus_20[refseq_20GCF_5F000260255.1_202012-05-01] 7,135 sequences; 2,995,889,303 total letters Query= NC_007346.1 Length=407339 Score E Sequences producing significant alignments: (Bits) Value seq288 163 7e-35 seq74 127 5e-24 seq146 100 7e-16 >seq288 Length=2168581 Score = 163 bits (180), Expect = 7e-35 Identities = 568/879 (65%), Gaps = 12/879 (1%) Strand=Plus/Minus Query 363391 TTCGGATATAAGACGATGGAGAAATCCTACCTATCTCGTATCAATGGTGATATTGTTGAA 363450 || || | |||||| |||||| ||||| | | |||||||| | | | |||| Sbjct 511555 TTTGGCTTTAAGACTCTGGAGAGGTCCTATTTGTTGAAGATCAATGGAAAAGTGGCTGAA 511496 Query 363451 CGCCCGCAGCATATGTTAATGCGTGTTGCTATTGGTATCCATTGCCCGGATGTTGATGCC 363510 | |||||||||||||| ||| | || || | || || || || | || || Sbjct 511495 AGGCCGCAGCATATGTTGATGAGGGTGTCTGTGGGGATTCACAAAGAAGACATAGAGGCT 511436 Query 363511 GCGATTGAAACATATAAGCTTCTAAGTGCTC----GTGTATTCACGCACGCCACGCCAAC 363566 || ||||||||||| || ||||| | | | ||| || || || || | || | Sbjct 511435 GCAATTGAAACATACAACCTTCT---TTCCCAGAAGTGGTTT-ACTCATGCTTCTCCCTC 511380 Query 363567 AATGTACAATGCTGGAACTCGTAATCCACAGATGTCTTCTTGCTTTCTTCTAAAAATGAA 363626 | | ||||||| | || ||||| | || || || ||||| | ||||| Sbjct 511379 TCTCTTCAATGCTAGTACCAACTGCCCACAACTTTCAAGCTGTTTCCTTCTGAGTATGAA 511320 Query 363627 GGACGATTCCATCGAGGGTATCTTTGACACACTTAAGAATTGTGCTCTTATTTCCAAGAA 363686 || || || ||| || || | |||||| || ||| | ||||| | ||||| || Sbjct 511319 AGATGACAGCACCGAAGGCATTTATGACACTCTGAAGCAGTGTGCATTGATTTCTAAATC 511260 Query 363687 TGCAGGCGGAATTGGTGTATCGATCCACAATGTTCGTGC-ACAGAACAGTTACATTCGCG 363745 || || ||||||||||| | | | || | || || | ||| ||||| | Sbjct 511259 CGCTGGAGGAATTGGTGTCACTGTGAGTTGTATTTGGGCTACTGG-CAGCTACATAGCTG 511201 Query 363746 GCACAGGGGGATACTCGAATGGGCTGGTTCCCATGCTTCGTGTGTTTGACAATACTGCGA 363805 | || || | || ||||| || || || ||||| | |||| | |||| || || Sbjct 511200 GGACCAATGGCAATTCTAATGGCCTTGTACCAATGCTGAGAGTGTATAACAACACAGCTC 511141 Query 363806 GGTACGTCGACCAGGGTGGAGGAAAGCGCAAAGGGGCGTTTGCTATGTATCTCGAGCCTC 363865 | || || || || |||||| ||| || ||||| |||||||| || || |||||| Sbjct 511140 GTTATGTTGATCAAGGTGGAAACAAGTGCCCTGGGGCATTTGCTATTTACCTGGAGCCTT 511081 Query 363866 ATCATGCCGATATTTTTGAGTTTCTTGAGCTCCGGAAAAACACGGGAAAAGAGGAATTGC 363925 ||| || || |||||||||||||| | || ||||| |||||||| || || Sbjct 511080 GGCATTTAGACATCTTTGAGTTTCTTGATTTAAAAAAGAACACAGGAAAAGAAGAGCAGC 511021 Query 363926 GTGCACGTGATCTGTTCTATGCACTTTGGGTTTCTG-ACCATTTTATGAAGCGCGTGGAG 363984 |||| | |||| |||| ||| |||| || ||||| | | || ||||| || || ||| Sbjct 511020 GTGCCAGGAATCTTTTCTTTGCCCTTT-GGATTCTGAATCTCTTCATGAAACGAGTAGAG 510962 Query 363985 GCAGGTAAGAATTGGTCACTCTTTTGCCCACACGAATGTCCAGGTCTTTCCGATGTATGG 364044 | | || | ||||| | | || ||| | || ||||| || || || || ||| Sbjct 510961 ACTAATCAGGACTGGTCTTTGCTGTGTCCAAATGAGTGTCCTGGCCTGGATGAGGTTTGG 510902 Query 364045 GGTGACGACTATGTTGCTCTATACGAAAAGTATGAATCGGAGGGAAAGGCTCGTAAGACA 364104 || || || | || |||| |||| |||||| | || | | ||| || Sbjct 510901 GGAGAGGAATTTGAGAAGTTATATGAAAGTTATGAAAAACAAGGTCATGTTCGCAAAGTT 510842 Query 364105 ATTCCCGCACAGAAGCTATGGTTTGCCATCATGGATTCGCAGATTGAGACAGGAACACCC 364164 | || ||| |||| |||| |||||| || || |||| ||| | || || | Sbjct 510841 GTAAAAGCTCAGCAGCTTTGGTACACCATCACTGAGTCTCAGACAGAGCCGGGTACCCTG 510782 Query 364165 TATATGTTGTACAAAGATTCGTGCAACCGCAAGTCCAACCAGCAGCACCTTGGTACAATT 364224 || ||| | ||||||||||| || || || ||| |||||||||| |||| || ||||| Sbjct 510781 TACATGCTCTACAAAGATTCCTGTAATCGGAAGAGCAACCAGCAGAACCTGGGAACAATC 510722 Query 364225 CAGCAGAGCAACCTATGTACCGAGATTATTGAATACACC 364263 | |||||||| || || || || ||||||| ||| Sbjct 510721 AAATGCAGCAACCTGTGCACAGAAATAGTTGAATATACC 510683 Score = 114 bits (126), Expect = 3e-20 Identities = 244/362 (67%), Gaps = 2/362 (1%) Strand=Plus/Minus Query 364753 CCCATGCCCACGGCTTCTACTGCACAGATCCTCGGAAACAACGAGTGCTTCGAACCGTTT 364812 |||||| | || ||||| ||||| |||||| | |||| || |||| | ||||| | | Sbjct 509363 CCCATGACTACTGCTTCAACTGCTCAGATCTTGAGAAAAAATGAGTCTATTGAACCTTAT 509304 Query 364813 ACAAGCAATCTTTATTCACGCCGGGTTCTTTCCGGAGAATTTCCGGTAGTTAATAAGTAC 364872 || ||||| | || | | | || | || |||||||||| | | || ||| || Sbjct 509303 ACCAGCAACATCTACACTCTAAGAGTCTTATCAGGAGAATTTCAGATTGTAAATCCTCAC 509244 Query 364873 CTAGTCAAGGATCTTTCCGACCGCGGGCTGTGGGGTGACAGCATGAAGAACTATATCATC 364932 || | || |||||| |||| || || | ||| ||| ||||| || | || || Sbjct 509243 -TATTGAAAGATCTTACCGAGCGGGGCTTATGGAATGAAGAAATGAAAAATCAGATTATT 509185 Query 364933 GCCGCTAATGGTTCTGTGCAGAACATTCCAGGATTTCCAGAAGATCTGAAGCCTATTTAC 364992 ||| ||||| ||| | |||| ||| | | |||| || || ||||| | |||| Sbjct 509184 GCCTGCAATGGCTCTATCCAGAGCATAGTGGAAATTCCCGATGACCTGAACCAGCTTTAT 509125 Query 364993 AAAACCGTATGGGAAATTTCCATGCGAACTCTCATTGATATGGCGGCCGATCGCGGTGCT 365052 || || ||||||||||| || | |||| || | | ||||| || ||||| |||||| Sbjct 509124 AAGACAGTATGGGAAATCTCTCAGAAAACTGTCCTGAAGATGGCTGCTGATCGTGGTGCT 509065 Query 365053 TTTATCTGTCAGAGCCAGTCGTTTAACGTATTCATGACTCAGCCAACCTCCGCCAAGCTT 365112 || || ||||||||||| || ||| | ||| || |||| | || | |||||| Sbjct 509064 TTCATTGATCAGAGCCAGTTTTTGAACATCCACATTGCTGAGCCCAACTAC-ACAAGCTC 509006 Query 365113 AC 365114 || Sbjct 509005 AC 509004 >seq74 Length=13126430 Score = 127 bits (140), Expect = 5e-24 Identities = 384/585 (66%), Gaps = 20/585 (3%) Strand=Plus/Minus Query 111315 TTTCCACTTCTCACAACAAAGCGAACATATTGGAAGGGAATTGTCGAAGAACTTCTGTGG 111374 ||||| || || || || ||||| || |||||||| ||| | ||||| || |||||| Sbjct 9228509 TTTCCCCTGCTGACCACCAAGCGTGTATTCTGGAAGGGTATTCTGGAAGAGCTGCTGTGG 9228450 Query 111375 TTTATTCGCGGAAGTACAAATGCAAATGAACTTGCAGCAAAAAATGTAAAAATTTGGGAT 111434 ||||| ||| ||||||||| || || || || | ||| || || || |||||| Sbjct 9228449 TTTATCAAGGGATCTACAAATGCCAAGGAGCTGTCATCCAAAGGAGTGAAGATCTGGGAT 9228390 Query 111435 GGAAATGGATCACGTGACTTTCTAGATTCAGT-TGGTCTTGTCGA-CAACGAAGAAGGTG 111492 | ||||| || || || || || || ||| ||| || || | | | ||||||| | Sbjct 9228389 GCCAATGGGTCCCGGGATTTCCTGGA--CAGCCTGGGGTTTTCTAGCCGCAAAGAAGGGG 9228332 Query 111493 ATCTCGGACCAGTTTACGGATTTCAATGGCGCCACTTTGGTGCAGACTACAAAACCATGC 111552 | || || || || || || || || ||| | || || || |||||||||||| | | Sbjct 9228331 ACCTGGGCCCCGTCTATGGCTTCCAGTGGAGGCATTTCGGGGCAGACTACAAAGATACG- 9228273 Query 111553 ACGACTCATATGATTCA---CAGGGAACTGATCAATTACAGAATGTCATTGATCAA---- 111605 |||||| || | || || ||| ||| || | ||||| || |||||| Sbjct 9228272 --GACTCAGATTACTCGGGTCAAGGAGTTGACCAGCTGCAGAACGT----GATCAACACC 9228219 Query 111606 ATTAAGAACAACCC-AACTTCTCGTCGCATTATTATGAGTGCATGGAACCCAAATGCATT 111664 || || | | |||| ||| | | | || || ||| |||| ||||||||||| | | Sbjct 9228218 ATCAAAACCGACCCTAACGACA-GAAGGATCATCATGTGTGCCTGGAACCCAAAAGATCT 9228160 Query 111665 GGAAAAAATGGCACTTCCACCATGTCATCTTATGTGCCAGTTTTATGTACACGACGGGAT 111724 ||||| || || || || || |||||||||| || || ||||| Sbjct 9228159 CCCTCTGATGGCGCTGCCTCCCTGCCACACCCTGTGCCAGTTCTACGTGGTGAACGGGGA 9228100 Query 111725 GCTTTCATGCCAAATGTATCAGCGATCTGCTGATATTGGTCTTGGTGTTCCGTTTAATAT 111784 ||| || ||||| |||| ||||| || | || || || || || || || || || || Sbjct 9228099 GCTGTCCTGCCAGCTGTACCAGCGGTCAGGGGACATGGGCCTGGGCGTACCCTTCAACAT 9228040 Query 111785 TGCAAGTTACGCACTACTTACTTGCTTAATCGCTCATTTTACAAATCTCAAACCGGGTGA 111844 || || | ||| || || || | | | |||| || | ||| || || || || || Sbjct 9228039 CGCCAGCTGCGCGCTGCTCACCTACATGGTCGCGCACGTCACAGGCCTGAAGCCAGGAGA 9227980 Query 111845 ATTCATTCACGTTATCGGAGATGCGCATGTTTACACAAACCACAT 111889 ||| | ||| | | ||||| || ||| | ||| || ||||| Sbjct 9227979 CTTCGTGCACACTTTGGGAGACGCACATATCTACCTGAATCACAT 9227935 >seq146 Length=7541600 Score = 100 bits (110), Expect = 7e-16 Identities = 114/153 (75%), Gaps = 0/153 (0%) Strand=Plus/Plus Query 364111 GCACAGAAGCTATGGTTTGCCATCATGGATTCGCAGATTGAGACAGGAACACCCTATATG 364170 || ||| |||| |||| |||||||| || || |||| |||||||| || || || ||| Sbjct 3716196 GCTCAGCAGCTTTGGTACGCCATCATTGAGTCTCAGACCGAGACAGGTACCCCGTACATG 3716255 Query 364171 TTGTACAAAGATTCGTGCAACCGCAAGTCCAACCAGCAGCACCTTGGTACAATTCAGCAG 364230 | ||||||||||| || || || ||| |||||||||| |||| || ||||| | Sbjct 3716256 CTCTACAAAGATTCCTGTAATCGGAAGAGCAACCAGCAGAACCTGGGAACAATCAAATGC 3716315 Query 364231 AGCAACCTATGTACCGAGATTATTGAATACACC 364263 |||||||| || || || || | ||||| ||| Sbjct 3716316 AGCAACCTGTGCACAGAAATAGTAGAATATACC 3716348 Score = 86.0 bits (94), Expect = 2e-11 Identities = 112/155 (72%), Gaps = 0/155 (0%) Strand=Plus/Plus Query 363830 AGCGCAAAGGGGCGTTTGCTATGTATCTCGAGCCTCATCATGCCGATATTTTTGAGTTTC 363889 ||||| ||||| |||||||| || || |||||| ||| || || |||||||||| Sbjct 3714609 AGCGCCCTGGGGCATTTGCTATTTACCTGGAGCCTTGGCATTTAGACATCTTTGAGTTTC 3714668 Query 363890 TTGAGCTCCGGAAAAACACGGGAAAAGAGGAATTGCGTGCACGTGATCTGTTCTATGCAC 363949 |||| | ||| ||||| ||||| || || |||||| | ||||| |||| ||| | Sbjct 3714669 TTGATTTAAAGAAGAACACAGGAAAGGAAGAGCAGCGTGCCAGAGATCTTTTCTTTGCCC 3714728 Query 363950 TTTGGGTTTCTGACCATTTTATGAAGCGCGTGGAG 363984 ||||| || | || | || ||||| || || ||| Sbjct 3714729 TTTGGATTCCAGATCTCTTCATGAAACGAGTAGAG 3714763 Score = 86.0 bits (94), Expect = 2e-11 Identities = 122/172 (71%), Gaps = 0/172 (0%) Strand=Plus/Plus Query 364967 TTCCAGAAGATCTGAAGCCTATTTACAAAACCGTATGGGAAATTTCCATGCGAACTCTCA 365026 |||| || || ||||||| |||| || || ||||||||||| || | |||| | Sbjct 3732586 TTCCCGATGACCTGAAGCAGCTTTATAAGACAGTATGGGAAATCTCTCAGAAAACTGTTC 3732645 Query 365027 TTGATATGGCGGCCGATCGCGGTGCTTTTATCTGTCAGAGCCAGTCGTTTAACGTATTCA 365086 | | ||||| || ||||| |||||||| || |||||||||||| || ||| | || Sbjct 3732646 TGAAGATGGCTGCTGATCGTGGTGCTTTCATTGATCAGAGCCAGTCTTTGAACATCCACA 3732705 Query 365087 TGACTCAGCCAACCTCCGCCAAGCTTACATCCATGCATTTCTACGGGTGGAA 365138 | || |||| | || | |||||| || ||||| ||||| || ||||| Sbjct 3732706 TTGCTGAGCCCAACTATGGCAAGCTCACCAGTATGCACTTCTATGGATGGAA 3732757 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1303234451079570