Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Octodon_20degus_20[refseq_20GCF_5F000260255.1_202012-05-01] 7,135 sequences; 2,995,889,303 total letters Query= NC_007383.1 Length=134394 Score E Sequences producing significant alignments: (Bits) Value seq79 109 5e-19 seq20 102 7e-17 seq77 86.0 5e-12 seq39 86.0 5e-12 seq27 86.0 5e-12 seq25 86.0 5e-12 seq194 82.4 7e-11 seq153 82.4 7e-11 seq70 82.4 7e-11 >seq79 Length=11620627 Score = 109 bits (120), Expect = 5e-19 Identities = 162/230 (70%), Gaps = 0/230 (0%) Strand=Plus/Plus Query 23988 AAAATGCAAGTGTTTGTAAAAACATTAACTGGAAAATCGATTACCATCGAAGTCGAGGCC 24047 |||||||| | || || || || | ||||| || | || ||| |||| || ||| || Sbjct 4060035 AAAATGCAGATCTTCGTGAAGACCCTCACTGGCAAGACCATCACCCTCGAGGTGGAGCCC 4060094 Query 24048 AACGACACCATCGAGCAAGTCAAACAAAAGATTACCGACAAAGAAGGCATACCTCCCGAT 24107 | ||||||||| ||| | ||||| ||||| ||||| ||||||||||| || || Sbjct 4060095 AGCGACACCATTGAGAACGTCAAGGCCAAGATCCAGGACAAGGAAGGCATACCCCCTGAC 4060154 Query 24108 CAACAGAGACTGATTTACGGCGGCAAGCAACTCGAAGATGACAGAAACGTCAGCGATTAT 24167 || ||||| ||||| | | |||||||| || ||||||| | | | || ||||| Sbjct 4060155 CAGCAGAGGCTGATCTTTGCTGGCAAGCAGCTGGAAGATGGGCGCACCCTCTCTGATTAC 4060214 Query 24168 AACATTCAAAAAGAATCTACAATTCATTTAGTGTTAAGATTGAGAGGAGG 24217 ||||| || || || || || | ||| | ||| | | |||||||||| Sbjct 4060215 AACATCCAGAAGGAGTCCACCCTGCATCTGGTGCTCCGCCTGAGAGGAGG 4060264 >seq20 Length=23447253 Score = 102 bits (112), Expect = 7e-17 Identities = 143/201 (71%), Gaps = 0/201 (0%) Strand=Plus/Minus Query 23987 CAAAATGCAAGTGTTTGTAAAAACATTAACTGGAAAATCGATTACCATCGAAGTCGAGGC 24046 |||||||||| | ||||| || || | || || || | || ||| | ||||| ||| | Sbjct 21063839 CAAAATGCAAATCTTTGTGAAGACCCTGACGGGCAAGACCATCACCCTGGAAGTGGAGCC 21063780 Query 24047 CAACGACACCATCGAGCAAGTCAAACAAAAGATTACCGACAAAGAAGGCATACCTCCCGA 24106 || |||||||| ||| | || || ||||| || ||||||||||| ||||| || Sbjct 21063779 CAGTGACACCATTGAGAACGTGAAGGCCAAGATCCAGGATAAAGAAGGCATCCCTCCTGA 21063720 Query 24107 TCAACAGAGACTGATTTACGGCGGCAAGCAACTCGAAGATGACAGAAACGTCAGCGATTA 24166 || ||||| ||||| | || |||||||| || ||||||| | | | | || || Sbjct 21063719 CCAGCAGAGGCTGATCTTCGCAGGCAAGCAGCTGGAAGATGGCCGCACTCTTTCTGACTA 21063660 Query 24167 TAACATTCAAAAAGAATCTAC 24187 ||||| |||||||| || || Sbjct 21063659 CAACATCCAAAAAGAGTCCAC 21063639 >seq77 Length=11908039 Score = 86.0 bits (94), Expect = 5e-12 Identities = 137/197 (70%), Gaps = 0/197 (0%) Strand=Plus/Plus Query 23991 ATGCAAGTGTTTGTAAAAACATTAACTGGAAAATCGATTACCATCGAAGTCGAGGCCAAC 24050 ||||| | ||||| || || | || || || | || ||| |||| || ||| ||| Sbjct 9796916 ATGCAGATCTTTGTGAAGACCCTGACGGGCAAGACCATCACCCTCGAGGTTGAGCCCAGT 9796975 Query 24051 GACACCATCGAGCAAGTCAAACAAAAGATTACCGACAAAGAAGGCATACCTCCCGATCAA 24110 |||||||||||| | |||||| || || ||||| || ||||| || || || || Sbjct 9796976 GACACCATCGAGAATGTCAAAGCCAAAATCCAAGACAAGGAGGGCATCCCCCCTGACCAG 9797035 Query 24111 CAGAGACTGATTTACGGCGGCAAGCAACTCGAAGATGACAGAAACGTCAGCGATTATAAC 24170 ||| | ||||| | | |||||| ||||| || |||| | | | || || || ||| Sbjct 9797036 CAGCGTCTGATATTTGCCGGCAAACAACTGGAGGATGGGCGGACCCTCTCTGACTACAAC 9797095 Query 24171 ATTCAAAAAGAATCTAC 24187 || |||||||| || || Sbjct 9797096 ATCCAAAAAGAGTCCAC 9797112 >seq39 Length=16355505 Score = 86.0 bits (94), Expect = 5e-12 Identities = 137/197 (70%), Gaps = 0/197 (0%) Strand=Plus/Plus Query 23991 ATGCAAGTGTTTGTAAAAACATTAACTGGAAAATCGATTACCATCGAAGTCGAGGCCAAC 24050 ||||| | ||||| || || | || || || | || ||| |||| || ||| ||| Sbjct 140641 ATGCAGATCTTTGTGAAGACCCTGACGGGCAAGACCATCACCCTCGAGGTTGAGCCCAGT 140700 Query 24051 GACACCATCGAGCAAGTCAAACAAAAGATTACCGACAAAGAAGGCATACCTCCCGATCAA 24110 |||||||||||| | |||||| || || ||||| || ||||| || || || || Sbjct 140701 GACACCATCGAGAATGTCAAAGCCAAAATCCAAGACAAGGAGGGCATCCCCCCTGACCAG 140760 Query 24111 CAGAGACTGATTTACGGCGGCAAGCAACTCGAAGATGACAGAAACGTCAGCGATTATAAC 24170 ||| | ||||| | | |||||| ||||| || |||| | | | || || || ||| Sbjct 140761 CAGCGTCTGATATTTGCCGGCAAACAACTGGAGGATGGGCGGACCCTCTCTGACTACAAC 140820 Query 24171 ATTCAAAAAGAATCTAC 24187 || |||||||| || || Sbjct 140821 ATCCAAAAAGAGTCCAC 140837 >seq27 Length=19580306 Score = 86.0 bits (94), Expect = 5e-12 Identities = 137/197 (70%), Gaps = 0/197 (0%) Strand=Plus/Minus Query 23991 ATGCAAGTGTTTGTAAAAACATTAACTGGAAAATCGATTACCATCGAAGTCGAGGCCAAC 24050 ||||| | ||||| || || | || || || | || ||| |||| || ||| ||| Sbjct 1542737 ATGCAGATCTTTGTGAAGACCCTGACGGGCAAGACCATCACCCTCGAGGTTGAGCCCAGT 1542678 Query 24051 GACACCATCGAGCAAGTCAAACAAAAGATTACCGACAAAGAAGGCATACCTCCCGATCAA 24110 |||||||||||| | |||||| || || ||||| || ||||| || || || || Sbjct 1542677 GACACCATCGAGAATGTCAAAGCCAAAATCCAAGACAAGGAGGGCATCCCCCCTGACCAG 1542618 Query 24111 CAGAGACTGATTTACGGCGGCAAGCAACTCGAAGATGACAGAAACGTCAGCGATTATAAC 24170 ||| | ||||| | | |||||| ||||| || |||| | | | || || || ||| Sbjct 1542617 CAGCGTCTGATATTTGCCGGCAAACAACTGGAGGATGGGCGGACCCTCTCTGACTACAAC 1542558 Query 24171 ATTCAAAAAGAATCTAC 24187 || |||||||| || || Sbjct 1542557 ATCCAAAAAGAGTCCAC 1542541 >seq25 Length=20573850 Score = 86.0 bits (94), Expect = 5e-12 Identities = 155/227 (68%), Gaps = 0/227 (0%) Strand=Plus/Minus Query 23991 ATGCAAGTGTTTGTAAAAACATTAACTGGAAAATCGATTACCATCGAAGTCGAGGCCAAC 24050 ||||| | || || || || | ||||| || | || ||| |||| || ||| ||| Sbjct 10707260 ATGCAGATCTTCGTGAAGACCCTCACTGGCAAGACCATCACCCTCGAGGTGGAGCCCAGT 10707201 Query 24051 GACACCATCGAGCAAGTCAAACAAAAGATTACCGACAAAGAAGGCATACCTCCCGATCAA 24110 ||||||| ||| | ||||| ||||| ||||| |||||||| || || || || Sbjct 10707200 GACACCACTGAGAATGTCAAGGCTAAGATCCAAGACAAGGAAGGCATCCCCCCTGACCAG 10707141 Query 24111 CAGAGACTGATTTACGGCGGCAAGCAACTCGAAGATGACAGAAACGTCAGCGATTATAAC 24170 ||||| ||||| | | |||||||| | ||||||| | | | || ||||| ||| Sbjct 10707140 CAGAGGCTGATCTTTGCTGGCAAGCAGTTGGAAGATGGGCGCACCCTCTCTGATTACAAC 10707081 Query 24171 ATTCAAAAAGAATCTACAATTCATTTAGTGTTAAGATTGAGAGGAGG 24217 || || || || || || | || | ||| | | ||||||||||| Sbjct 10707080 ATCCAGAAGGAGTCCACCCTGCACCTGGTGCTCCGCTTGAGAGGAGG 10707034 >seq194 Length=4322719 Score = 82.4 bits (90), Expect = 7e-11 Identities = 144/210 (69%), Gaps = 0/210 (0%) Strand=Plus/Plus Query 23991 ATGCAAGTGTTTGTAAAAACATTAACTGGAAAATCGATTACCATCGAAGTCGAGGCCAAC 24050 ||||| | ||||| || || | || || || | || ||| |||| || ||| ||| | Sbjct 672695 ATGCAGATCTTTGTGAAGACCCTGACGGGCAAGACCATCACCCTCGAGGTTGAGCCCAGC 672754 Query 24051 GACACCATCGAGCAAGTCAAACAAAAGATTACCGACAAAGAAGGCATACCTCCCGATCAA 24110 |||||||||||| | |||||| || || |||| || ||||| || ||||| || Sbjct 672755 GACACCATCGAGAATGTCAAAGCCAAAATCCAAGACACGGAGGGCATCCCCCCCGACCAG 672814 Query 24111 CAGAGACTGATTTACGGCGGCAAGCAACTCGAAGATGACAGAAACGTCAGCGATTATAAC 24170 ||| | ||||| | | |||||| || || || |||| | | | || || || ||| Sbjct 672815 CAGCGTCTGATATTTGCCGGCAAACACCTGGAGGATGGGCGGACCCTCTCTGACTACAAC 672874 Query 24171 ATTCAAAAAGAATCTACAATTCATTTAGTG 24200 || |||| ||| || || | || ||||| Sbjct 672875 ATCCAAAGAGAGTCCACCCTGCACCTAGTG 672904 >seq153 Length=6577703 Score = 82.4 bits (90), Expect = 7e-11 Identities = 131/188 (70%), Gaps = 0/188 (0%) Strand=Plus/Plus Query 24000 TTTGTAAAAACATTAACTGGAAAATCGATTACCATCGAAGTCGAGGCCAACGACACCATC 24059 |||||||| || | || || || | || ||| |||| || ||| ||| ||||||||| Sbjct 477062 TTTGTAAAGACCCTGACAGGCAAGACCATCACCCTCGAGGTTGAGCCCAGTGACACCATC 477121 Query 24060 GAGCAAGTCAAACAAAAGATTACCGACAAAGAAGGCATACCTCCCGATCAACAGAGACTG 24119 ||| | |||||| || || ||||| || ||||| || || || || ||| | ||| Sbjct 477122 GAGAATGTCAAAGCCAAAATCCAAGACAAGGAGGGCATCCCCCCTGACCAGCAGCGTCTG 477181 Query 24120 ATTTACGGCGGCAAGCAACTCGAAGATGACAGAAACGTCAGCGATTATAACATTCAAAAA 24179 || | | |||||| ||||| || |||| | | | || || || ||||| |||| | Sbjct 477182 ATATTTGCCGGCAAACAACTGGAGGATGGGCGGACCCTCTCTGACTACAACATCCAAAGA 477241 Query 24180 GAATCTAC 24187 || || || Sbjct 477242 GAGTCCAC 477249 >seq70 Length=12294693 Score = 82.4 bits (90), Expect = 7e-11 Identities = 150/220 (68%), Gaps = 0/220 (0%) Strand=Plus/Minus Query 23987 CAAAATGCAAGTGTTTGTAAAAACATTAACTGGAAAATCGATTACCATCGAAGTCGAGGC 24046 ||| ||||| | || || ||||| | || ||||| | || || |||| || ||| | Sbjct 8652929 CAAGATGCAGATTTTCGTGAAAACCCTCACAGGAAAGACCATCACGCTCGAGGTTGAGCC 8652870 Query 24047 CAACGACACCATCGAGCAAGTCAAACAAAAGATTACCGACAAAGAAGGCATACCTCCCGA 24106 | ||||| || || | || || ||||| || || |||| || ||||| || Sbjct 8652869 CTGGGACACTATAGAAAATGTAAAGGCCAAGATCCAGGATAAGAAAGGAATTCCTCCTGA 8652810 Query 24107 TCAACAGAGACTGATTTACGGCGGCAAGCAACTCGAAGATGACAGAAACGTCAGCGATTA 24166 ||| || || ||||| | | || |||||||| ||||||| | | | | ||||| Sbjct 8652809 TCAGCAAAGGCTGATCTTTGCTGGTAAGCAACTGGAAGATGGACGGACCTTGCCTGATTA 8652750 Query 24167 TAACATTCAAAAAGAATCTACAATTCATTTAGTGTTAAGA 24206 ||||||||||| || ||||| ||||| | ||||| ||| Sbjct 8652749 CAACATTCAAAAGGAGTCTACCCTTCATCTTGTGTTGAGA 8652710 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 429898613705925