Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Octodon_20degus_20[refseq_20GCF_5F000260255.1_202012-05-01] 7,135 sequences; 2,995,889,303 total letters Query= NC_008518.1 Length=174059 Score E Sequences producing significant alignments: (Bits) Value seq187 165 9e-36 seq151 93.3 5e-14 >seq187 Length=5094135 Score = 165 bits (182), Expect = 9e-36 Identities = 384/578 (66%), Gaps = 26/578 (4%) Strand=Plus/Plus Query 93080 TTGTACATTAAGCACGCAAAGTCGGTATGTAAACCTTCGTCTCGTGATA-TCAACTCATT 93138 ||| |||| | |||| | ||||| | | || || |||| || || || | | || || Sbjct 5121 TTGAACATCAGGCACACGAAGTCACAACGCAAGCCCTCGTATC-TGCTAATGAGTTCGTT 5179 Query 93139 GCTGAATGTTAAACCTGGTAACAGTCCTCGTTTCTTGAGCCAAAATATTGAAGCAAAACT 93198 | || || | || || | || || |||||||||||||| || || | |||||| Sbjct 5180 GGAAAAGGTGAGGCCAGGCATGAGGCCCCGTTTCTTGAGCCAGAAGATCAACGCAAAAGA 5239 Query 93199 ACCAGaaaaaaaTATACCTTCCACGGCTGCAAATGCCACAATACGTTCGGCAAAATTTGC 93258 ||||||||| || || |||||||| | |||| ||||| | |||| || | | || Sbjct 5240 ACCAGAAAAGAAAATTCCTTCCACAGTGACAAAGGCCACCGTGTGTTCTCCATATGTGGC 5299 Query 93259 GGAATTACTGCTGATCCATTTTAAAGCCCAATCGGCTTTTTTCTTAATACAAGGTAGTGT 93318 || | ||||| || ||||| || || || ||||| | ||| | | || Sbjct 5300 CTCTTTGTCCCCTATCCAGCGCAACGCCCAGTCTGCCTTCTTCTTCACACAGGCCACGGT 5359 Query 93319 TTCGATAGCGTTAAATAGGTAATCTCGCTCGTCCGAATCTCGTATGTATGTATCGATTAA 93378 || | || || || || | || | || | ||||||| ||||| || || || | Sbjct 5360 CTCAGTGGCATTGAAGAGAAACTCCCTTTCTTGGGAATCTCTAATGTAAGTGTCCATAAG 5419 Query 93379 CAGAGAATACATTTCAGAATGGACATTCTCCATTGCAATTTGGAATCCGTAGAAACATCT 93438 || | |||||||| ||||| | || ||||| ||||| ||||| ||||||||||| | Sbjct 5420 GAGTGTGTACATTTCCGAATGCAGGTTTTCCATGGCAATCTGGAAGCCGTAGAAACACCG 5479 Query 93439 AGCTTCCGTGATCTGCACTTCTTGAGAAAATCTCTCTACGAGATTTTCATTGACTATACC 93498 ||||| || || || |||||||| ||||| ||| || ||||| ||| ||||||| || Sbjct 5480 GGCTTCTGTAATTTGAACTTCTTGGTTAAATCGCTCCACCAGATTCTCACTGACTATGCC 5539 Query 93499 ATCGGATGCTGCaaaaaaaGCCAATATA-------------------TGCTTTATAAAAT 93539 |||| || | ||||||| |||||| || |||||| | Sbjct 5540 ATCGCTGGCAGGAAAAAAA---AATATAATAATAAAAAGTTAGAATGTGTGATATAAAGT 5596 Query 93540 GTTTCTCATCATCTTTAAGCTTATCCCAAT-CGGATAGATCTTTTGAAAGATCGACTTCT 93598 | |||| ||| | || || ||||| | | || | ||||| |||||||||||||| Sbjct 5597 ATCTCTCTTCAGCCTTCAGGGCTTCCCAGTGCTGA-ATGTCTTTGGAAAGATCGACTTCC 5655 Query 93599 TCGACAGTCCAAAACGATGCTTCTGCTTTTTTGTACAT 93636 || | |||||||| || || || ||||| || |||| Sbjct 5656 TCCGCTGTCCAAAAAGAAGCCTCGGCTTTCTTACACAT 5693 >seq151 Length=7174217 Score = 93.3 bits (102), Expect = 5e-14 Identities = 72/86 (84%), Gaps = 0/86 (0%) Strand=Plus/Minus Query 93161 AGTCCTCGTTTCTTGAGCCAAAATATTGAAGCAAAACTACCAGaaaaaaaTATACCTTCC 93220 |||||||||||||||||||| || ||||| |||||| ||||||||| || || |||||| Sbjct 1182509 AGTCCTCGTTTCTTGAGCCAGAAGATTGACGCAAAAGAACCAGAAAAGAAGATGCCTTCC 1182450 Query 93221 ACGGCTGCAAATGCCACAATACGTTC 93246 || || ||||| ||||| | ||||| Sbjct 1182449 ACAGCGGCAAAGGCCACCACGCGTTC 1182424 Score = 86.0 bits (94), Expect = 7e-12 Identities = 94/125 (75%), Gaps = 0/125 (0%) Strand=Plus/Minus Query 93353 GAATCTCGTATGTATGTATCGATTAACAGAGAATACATTTCAGAATGGACATTCTCCATT 93412 |||||| ||||| || || || | |||| |||||||| ||||| | || ||||| Sbjct 1180954 GAATCTTTAATGTAAGTGTCAATAAGCAGACTGTACATTTCCGAATGTATGTTTTCCATA 1180895 Query 93413 GCAATTTGGAATCCGTAGAAACATCTAGCTTCCGTGATCTGCACTTCTTGAGAAAATCTC 93472 ||||| ||||| ||||||||||| | ||||| || || || |||||||| ||||| | Sbjct 1180894 GCAATCTGGAAGCCGTAGAAACAACGGGCTTCTGTAATTTGAACTTCTTGGCTAAATCGC 1180835 Query 93473 TCTAC 93477 || || Sbjct 1180834 TCCAC 1180830 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 556811134977400