Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Octodon_20degus_20[refseq_20GCF_5F000260255.1_202012-05-01] 7,135 sequences; 2,995,889,303 total letters Query= NC_009127.1 Length=295146 Score E Sequences producing significant alignments: (Bits) Value seq187 159 7e-34 seq151 105 1e-17 >seq187 Length=5094135 Score = 159 bits (176), Expect = 7e-34 Identities = 349/516 (68%), Gaps = 15/516 (3%) Strand=Plus/Minus Query 42444 GACGGCATAGTCAATGAGAACCTGGCCACCAGGTTCATGAAAGAGGTGCAG--TACTTTG 42501 || |||||||||| |||||| |||| | || | |||| || || ||| | Sbjct 5542 GATGGCATAGTCAGTGAGAATCTGGTGGAGCGATTTAACCAAGAAGTTCAAATTACA--G 5485 Query 42502 AGGCGCGCTGCTTCTACGGCTTCCAGATAGCCATAGAGAACGTGCACTCTGAGGTGTACG 42561 | || || || ||||||||||||||||| ||||| || ||| |||| || || ||||| Sbjct 5484 AAGCCCGGTGTTTCTACGGCTTCCAGATTGCCATGGAAAACCTGCATTCGGAAATGTACA 5425 Query 42562 CCAAACTGCTCA---ACACGTACATCCTGGATCCCGTCGAGCGTAACGGGCTGTTCAAGG 42618 | ||| || | |||| ||||| ||| || || | | || ||||| | Sbjct 5424 C---ACTCCTTATGGACACTTACATTAGAGATTCCCAAGAAAGGGAGTTTCTCTTCAATG 5368 Query 42619 CCATGGAGACGATGCCCTGCATCAAGAAGAAGGCGGACTGGGCGCTCAACTGGATCGAGA 42678 ||| ||||| || |||| | ||||||||||| ||||||||| | |||||| | | Sbjct 5367 CCACTGAGACCGTGGCCTGTGTGAAGAAGAAGGCAGACTGGGCGTTGCGCTGGATAGGGG 5308 Query 42679 GTCCCGACGCAACGTTCGGCGAGAGGCTGGTAGCCTTTACCGCCGTCGAGGGCATCTTCT 42738 || || || | || || ||| |||||| | | || || || || |||| Sbjct 5307 ACAAAGAGGCCACATATGGAGAACACACGGTGGCCTTTGTCACTGTGGAAGGAATTTTCT 5248 Query 42739 TCTCGGGCGCCTTCGCCTCCATCTTCTGGCTCAAGCAGAAGGTGTCG-ATGCCCGGACTC 42797 | || || | || || | ||||||||||||||| | | || | | ||||| || ||| Sbjct 5247 TTTCTGGTTCTTTTGCGTTGATCTTCTGGCTCAAGAA-ACGGGGCCTCATGCCTGGCCTC 5189 Query 42798 ACCTTCTCGAACGAACTCATCAGCAGGGACGAGGGGCTGCATAGGGACTTTGCCTGCCTC 42857 ||||| || ||||||||||| ||||| ||||||| ||| | | ||||| | ||||| Sbjct 5188 ACCTTTTCCAACGAACTCATTAGCAGATACGAGGGCTTGCGTTGTGACTTCGTGTGCCTG 5129 Query 42858 CTGTTCTCGAGCCACCTCAGGCACAAGCCCTCGAAGGAGCGGGTCCGGGCCATCATCACG 42917 ||||| | ||||| ||||||||| | | || || |||| ||| || ||| Sbjct 5128 ATGTTC---AAGCACCTGGTGCACAAGCCGTTGGAGCAGAGGGTGAGGGAGATTGTCATC 5072 Query 42918 GAGGCCGTGGAGATCGAGAAGGAGTTCCTCACGCAG 42953 | ||| | | || ||| |||||||||||||| || Sbjct 5071 AACGCCATCGGCATTGAGCAGGAGTTCCTCACGGAG 5036 >seq151 Length=7174217 Score = 105 bits (116), Expect = 1e-17 Identities = 101/127 (80%), Gaps = 2/127 (2%) Strand=Plus/Plus Query 42706 TGGTAGCCTTTACCGCCGTCGAGGGCATCTTCTTCTCGGGCGCCTTCGCCTCCATCTTCT 42765 |||| |||||| |||| || || ||||||||||| || || | || || || ||||||| Sbjct 1182431 TGGTGGCCTTTGCCGCTGTGGAAGGCATCTTCTTTTCTGGTTCTTTTGCGTCAATCTTCT 1182490 Query 42766 GGCTCAAG-CAGAAGGTGTCGATGCCCGGACTCACCTTCTCGAACGAACTCATCAGCAGG 42824 |||||||| | ||| || ||||| || |||||||| || ||||||||||| ||||| Sbjct 1182491 GGCTCAAGAAACGAGGACTC-ATGCCTGGCCTCACCTTTTCCAACGAACTCATTAGCAGA 1182549 Query 42825 GACGAGG 42831 ||||||| Sbjct 1182550 GACGAGG 1182556 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 944254976747600