Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Octodon_20degus_20[refseq_20GCF_5F000260255.1_202012-05-01] 7,135 sequences; 2,995,889,303 total letters Query= NC_009333.1 Length=137969 Score E Sequences producing significant alignments: (Bits) Value seq74 250 2e-61 seq107 154 1e-32 >seq74 Length=13126430 Score = 250 bits (276), Expect = 2e-61 Identities = 434/631 (69%), Gaps = 0/631 (0%) Strand=Plus/Plus Query 20191 GTAGATGTGGGCATCTCCCAACGTGTGAATAAACTCCCCGGGTCTAAGACCAGTAACATG 20250 |||||| || || |||||||| ||||| | || || || || | || || || || || Sbjct 9227946 GTAGATATGTGCGTCTCCCAAAGTGTGCACGAAGTCTCCTGGCTTCAGGCCTGTGACGTG 9228005 Query 20251 AGCAAGCATATAAGTTAAGAGGGAATAGCTGGCAATGTTAAAAGGAACTCCCAAACCCAT 20310 || | ||| || || | || | ||||||| ||||| || || || |||| ||||| Sbjct 9228006 CGCGACCATGTAGGTGAGCAGCGCGCAGCTGGCGATGTTGAAGGGTACGCCCAGGCCCAT 9228065 Query 20311 GTCTCCCGACCTCTGATACAGCTGACAGGAAAGCTCACCGTCAGCTACATAAAATTGACA 20370 ||| || |||| ||| |||||||| ||||| ||||| |||| | || || || || || Sbjct 9228066 GTCCCCTGACCGCTGGTACAGCTGGCAGGACAGCTCCCCGTTCACCACGTAGAACTGGCA 9228125 Query 20371 TAACAAGTGACAGGGCGGAAGCGCCATCAACGACAAGTCCGCCGGGTTCCACGCACACAT 20430 | ||| ||||| || |||||||||| | | || |||||||| |||||||| Sbjct 9228126 CAGGGTGTGGCAGGGAGGCAGCGCCATCAGAGGGAGATCTTTTGGGTTCCAGGCACACAT 9228185 Query 20431 AATGATTCTTCTATCGTGCGGATTATTTTTTATTAAATCCACAATGTACGACAATTGGTC 20490 ||||| ||||| |||| || | |||| || | | | || | || ||||| Sbjct 9228186 GATGATCCTTCTGTCGTTAGGGTCGGTTTTGATGGTGTTGATCACGTTCTGCAGCTGGTC 9228245 Query 20491 AAACCCCTGGCCTGTATAGTCAGCATCCGCGTCCACGTACGCCGCCCCAAAGTGCCTCCA 20550 || || || || | || || | |||| || ||| | ||||| || |||||||| Sbjct 9228246 AACTCCTTGACCCGAGTAATCTGAGTCCGTATCTTTGTAGTCTGCCCCGAAATGCCTCCA 9228305 Query 20551 CTGGAAACCGTAAACAGGTCCCAAATCCCCCTCCCTTCTGTGCGCCAGGCCGCGCCCGGC 20610 |||||| || || || || |||| ||||| || | | | | | || | | | | Sbjct 9228306 CTGGAAGCCATAGACGGGGCCCAGGTCCCCTTCTTTGCGGCTAGAAAACCCCAGGCTGTC 9228365 Query 20611 CAGGAACTCCCTGGAGCCATTTTTGTCCCATATCTTGACTCCTGTTCTTGAAAGCTCCCT 20670 |||||| |||| ||| ||||| ||||| ||||| |||||| | ||| |||||| | Sbjct 9228366 CAGGAAATCCCGGGACCCATTGGCATCCCAGATCTTCACTCCTTTGGATGACAGCTCCTT 9228425 Query 20671 GGAGTCAGTACTCCCCTTCAGAAACCAAAGCAGCTCTTGCACTACGCCTCGCCAAAACAC 20730 || | ||| ||||| | |||||| |||||||||| || | || ||| || || Sbjct 9228426 GGCATTTGTAGATCCCTTGATAAACCACAGCAGCTCTTCCAGAATACCCTTCCAGAATAC 9228485 Query 20731 CCGCTTTGTGGTTAGTAAGGGAAAGTGGTCCCGCAGACTATACCTGGCCTGCATGCCAAA 20790 ||||| ||||| || | |||||| | || ||||| || || | ||||||||||| || Sbjct 9228486 ACGCTTGGTGGTCAGCAGGGGAAATTCATCTCGCAGGCTGTAGCGCGCCTGCATGCCGAA 9228545 Query 20791 TAGAGAGAGGGTGCCTATGCCGGTGCGGTCG 20821 || || || ||||| |||| |||||||| Sbjct 9228546 CAGCGACAGCGTGCCAGTGCCCATGCGGTCG 9228576 >seq107 Length=10030941 Score = 154 bits (170), Expect = 1e-32 Identities = 362/547 (66%), Gaps = 22/547 (4%) Strand=Plus/Minus Query 20276 TAGCTGGCAATGTTAAAAGGAACTCCCAAACCCATGTCTCCCGACCTCTGA--TACAGCT 20333 |||||| | ||||| || || ||||||| ||||| || || |||| ||| ||| ||| Sbjct 3003263 TAGCTGACGATGTTGAAGGGCACTCCCAGGCCCATATCCCCTGACCACTGTGGTACGGCT 3003204 Query 20334 GACAGGAAAGCTCACCGTCAGCTACATAAAATTGACATAACAAGTGACAGGGCGGAAGCG 20393 | ||||| ||||| || | | || ||||| | || | ||| ||||| || || | Sbjct 3003203 GGCAGGACAGCTCCCCATTCACCACGTAAAACTAGCACAGGGTGTGGCAGGGAGGCAGAG 3003144 Query 20394 CCATCAACGACAAGTCCGCCGGGTTCCACGCACACATAATGATTCTTCTATCGTGCGGAT 20453 |||||| | | || | |||| || |||||||| ||||| ||||| || | || | Sbjct 3003143 CCATCAGAGGGAGATCTTTCAGGTTTCAGGCACACATGATGATCCTTCTGTCATCAGGGT 3003084 Query 20454 TATTTTTTATTAAATCCACAATGTACGACAATTGGTCAAACCCCTGGCCTGTATAGTCAG 20513 | |||| || | | | || | || |||||| || || |||| || || | Sbjct 3003083 TGGTTTTGATGGTGTTGATCACGTTCTGCAGCTGGTCATCTCCTTGACCTGAGTAATCTG 3003024 Query 20514 CATCCGCGTCCACGTACGCCGCCCCAAAGTGCCTCCACTGGAAACCGTAAACAGGTCCCA 20573 ||| | |||| | |||| || |||||||||||||| || | || || |||| Sbjct 3003023 AGTCCATACCTTCGTAGTCAGCCCTGAAATGCCTCCACTGGAAGCCACAGACGGGGCCCA 3002964 Query 20574 AATCCCCCTCCCTTCTGTGCGCCAGGCCGCGCCCGG----CCAGGAACTCCCTGGAGCCA 20629 ||||||| ||| || || || | || || ||||||| |||| ||| ||| Sbjct 3002963 GGTCCCCCTTCCTGGTG---GCTAGAAAACCCCAGGCTATCCAGGAAATCCCGGGACCCA 3002907 Query 20630 TTTTTGTCCCATATCTTGACTCCTGTTCTTGAAAGCTCCCTGGAGTCAGTACTCCCCTTC 20689 || ||||| ||||| |||||| | ||| |||||| ||| | | | ||||| Sbjct 3002906 TTGGCATCCCAGATCTTCACTCCTTTGGATGACAGCTCCTTGGCATTTGCATATCCCTTG 3002847 Query 20690 AGAAACCAAAGCAGCTCTTGCACTACGCCTCGCCAAAACACCCGCTTTGTGGTTAGTAAG 20749 | |||||| ||||| || | ||| ||||| |||| |||||||| ||| Sbjct 3002846 ATAAACCACAGCAGTTC-------------CTCCAGAACACATGCTTGGTGGTTAGCAAG 3002800 Query 20750 GGAAAGTGGTCCCGCAGACTATACCTGGCCTGCATGCCAAATAGAGAGAGGGTGCCTATG 20809 ||||| | || | ||| || || | || |||||||| || || | || |||| ||| Sbjct 3002799 GGAAATTCATCTCACAGGCTGTAGCGCGCTTGCATGCCGAACAGCAACAGCATGCCAATG 3002740 Query 20810 CCGGTGC 20816 ||||||| Sbjct 3002739 CCGGTGC 3002733 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 441333435063400