Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Octodon_20degus_20[refseq_20GCF_5F000260255.1_202012-05-01] 7,135 sequences; 2,995,889,303 total letters Query= NC_009503.1 Length=124121 Score E Sequences producing significant alignments: (Bits) Value seq79 93.3 3e-14 seq76 93.3 3e-14 seq55 93.3 3e-14 seq25 89.7 4e-13 seq57 84.2 2e-11 >seq79 Length=11620627 Score = 93.3 bits (102), Expect = 3e-14 Identities = 89/114 (78%), Gaps = 0/114 (0%) Strand=Plus/Minus Query 33900 ACCTCCTCTCAGCCGCAGCACCAGATGAAGCGTGCTCTCCTTCTGAATGTTGTAATCTGC 33959 |||||||||||| || ||||||||||| || ||| ||||||||| ||||||||||| | Sbjct 4060265 ACCTCCTCTCAGGCGGAGCACCAGATGCAGGGTGGACTCCTTCTGGATGTTGTAATCAGA 4060206 Query 33960 CAATTGTCGCTCGTCGTCCAATTGCTTGCCGGCAAATATCAGGCGCTGCTGATC 34013 | ||| | || |||| |||||||| ||||| ||||| | |||||| || Sbjct 4060205 GAGGGTGCGCCCATCTTCCAGCTGCTTGCCAGCAAAGATCAGCCTCTGCTGGTC 4060152 >seq76 Length=11650222 Score = 93.3 bits (102), Expect = 3e-14 Identities = 89/114 (78%), Gaps = 0/114 (0%) Strand=Plus/Minus Query 33900 ACCTCCTCTCAGCCGCAGCACCAGATGAAGCGTGCTCTCCTTCTGAATGTTGTAATCTGC 33959 |||||||||||| || ||||||||||| || ||| ||||||||| ||||||||||| | Sbjct 5166934 ACCTCCTCTCAGGCGGAGCACCAGATGCAGAGTGGACTCCTTCTGGATGTTGTAATCAGA 5166875 Query 33960 CAATTGTCGCTCGTCGTCCAATTGCTTGCCGGCAAATATCAGGCGCTGCTGATC 34013 | ||| | || |||| |||||||| ||||| ||||| | |||||| || Sbjct 5166874 GAGGGTGCGCCCATCTTCCAGCTGCTTGCCAGCAAAGATCAGCCTCTGCTGGTC 5166821 >seq55 Length=13856975 Score = 93.3 bits (102), Expect = 3e-14 Identities = 89/114 (78%), Gaps = 0/114 (0%) Strand=Plus/Minus Query 33900 ACCTCCTCTCAGCCGCAGCACCAGATGAAGCGTGCTCTCCTTCTGAATGTTGTAATCTGC 33959 |||||||||||| || ||||||||||| || ||| ||||||||| ||||||||||| | Sbjct 11190343 ACCTCCTCTCAGGCGGAGCACCAGATGCAGGGTGGACTCCTTCTGGATGTTGTAATCAGA 11190284 Query 33960 CAATTGTCGCTCGTCGTCCAATTGCTTGCCGGCAAATATCAGGCGCTGCTGATC 34013 | ||| | || |||| |||||||| ||||| ||||| | |||||| || Sbjct 11190283 GAGGGTGCGCCCATCTTCCAGCTGCTTGCCAGCAAAGATCAGCCTCTGCTGGTC 11190230 >seq25 Length=20573850 Score = 89.7 bits (98), Expect = 4e-13 Identities = 88/114 (77%), Gaps = 0/114 (0%) Strand=Plus/Plus Query 33900 ACCTCCTCTCAGCCGCAGCACCAGATGAAGCGTGCTCTCCTTCTGAATGTTGTAATCTGC 33959 ||||||||||| || |||||||| || || ||| ||||||||| ||||||||||| | Sbjct 10707033 ACCTCCTCTCAAGCGGAGCACCAGGTGCAGGGTGGACTCCTTCTGGATGTTGTAATCAGA 10707092 Query 33960 CAATTGTCGCTCGTCGTCCAATTGCTTGCCGGCAAATATCAGGCGCTGCTGATC 34013 | ||| | || ||||| |||||||| ||||| ||||| | |||||| || Sbjct 10707093 GAGGGTGCGCCCATCTTCCAACTGCTTGCCAGCAAAGATCAGCCTCTGCTGGTC 10707146 >seq57 Length=13618965 Score = 84.2 bits (92), Expect = 2e-11 Identities = 99/134 (74%), Gaps = 0/134 (0%) Strand=Plus/Plus Query 33901 CCTCCTCTCAGCCGCAGCACCAGATGAAGCGTGCTCTCCTTCTGAATGTTGTAATCTGCC 33960 || |||| ||| || |||||||| || || ||| ||| ||||| |||||||| || | Sbjct 4324825 CCACCTCGCAGGCGAAGCACCAGGTGCAGGGTGGACTCTTTCTGGATGTTGTAGTCAGAG 4324884 Query 33961 AATTGTCGCTCGTCGTCCAATTGCTTGCCGGCAAATATCAGGCGCTGCTGATCCACCGGC 34020 | ||| | || |||| ||| ||||||||||||||||| |||||||| || || Sbjct 4324885 AGGGTCCGCCCATCCTCCAGTTGTTTGCCGGCAAATATCAGACGCTGCTGGTCAGGGGGG 4324944 Query 34021 ACGCTCTCTTTGTC 34034 | || ||| ||||| Sbjct 4324945 ATGCCCTCCTTGTC 4324958 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 397027872322270