Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Octodon_20degus_20[refseq_20GCF_5F000260255.1_202012-05-01] 7,135 sequences; 2,995,889,303 total letters Query= NC_012639.1 Length=141291 Score E Sequences producing significant alignments: (Bits) Value seq51 86.0 6e-12 seq146 84.2 2e-11 >seq51 Length=14832274 Score = 86.0 bits (94), Expect = 6e-12 Identities = 145/210 (69%), Gaps = 0/210 (0%) Strand=Plus/Plus Query 45131 CACTAGATGCAGCGTTGATTCCTTTTGGATATTATAATCGCTGACGGTTTTAGAATCGTC 45190 ||| || ||||| || || || |||||||| || || || || ||| || || Sbjct 4138772 CACCAGGTGCAGAGTGGACTCTTTTTGGATGTTGTAGTCAGAGAGGGTCCGCCCATACTC 4138831 Query 45191 CAATTGTTTTCCTGCGTATATCAATCGTTGCTGGTCCGGCGGAATGCCTTCTTTATCTTG 45250 || |||||| || || |||||| ||||||||||| || || ||||| || || | ||| Sbjct 4138832 CAGTTGTTTGCCGGCAAATATCAGACGTTGCTGGTCAGGGGGGATGCCCTCCTTGTTTTG 4138891 Query 45251 AATTTTTTGTTTGATCGCTTCTACGGTGTCGGAAGACTCGACTTCGAGAGTAACCGTTTT 45310 ||||| ||||| || | |||||| | ||| || ||||| || | || || Sbjct 4138892 GATTTTGGCTTTGACATTCTCGATGGTGTCACTGGGCTCAACCTCGAGGGTGATGGTCTT 4138951 Query 45311 GCCGGTTAGAGTTTTTACAAAAATTTGCAT 45340 ||| || || || || ||||| || ||||| Sbjct 4138952 GCCCGTCAGGGTCTTCACAAAGATCTGCAT 4138981 >seq146 Length=7541600 Score = 84.2 bits (92), Expect = 2e-11 Identities = 85/111 (77%), Gaps = 0/111 (0%) Strand=Plus/Plus Query 123605 CGAAACCGGAACGCCGTACATGCTCTACAAAGACGCCTGCAACAGGAAAACCAATCAGAG 123664 ||| || || || |||||||||||||||||||| |||| || |||| | ||| ||| Sbjct 3716234 CGAGACAGGTACCCCGTACATGCTCTACAAAGATTCCTGTAATCGGAAGAGCAACCAGCA 3716293 Query 123665 CAACTTGGGAACAATAAAATGTAGTAATCTTTGCTCCGAAATTATCGAATA 123715 ||| |||||||||| ||||| || || || ||| | ||||| | ||||| Sbjct 3716294 GAACCTGGGAACAATCAAATGCAGCAACCTGTGCACAGAAATAGTAGAATA 3716344 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 451962886964600