Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Octodon_20degus_20[refseq_20GCF_5F000260255.1_202012-05-01] 7,135 sequences; 2,995,889,303 total letters Query= NC_012783.2 Length=226205 Score E Sequences producing significant alignments: (Bits) Value seq188 181 2e-40 seq138 129 8e-25 >seq188 Length=5414077 Score = 181 bits (200), Expect = 2e-40 Identities = 211/285 (74%), Gaps = 0/285 (0%) Strand=Plus/Minus Query 8891 AACGGACATCCCTTCACATTGGCACAAATGAGGGACTGAATGGTTGCGGTTTTCACGATG 8950 || ||||| ||||||||||| || || ||||||||||||| || || || | ||| Sbjct 4139640 AAAGGACAGCCCTTCACATTTCTGCAGATCAGGGACTGAATGGAGGCTGTGTTGATGATC 4139581 Query 8951 TCTAAACCTACGTCCCCGCCGAAGGTGCTGGGTTTCCAGTACGCCGGGGAGCAGATGACG 9010 || ||||| || || || || || || || |||||||||||| || ||||| || | Sbjct 4139580 TCAAAACCCACTTCTCCTCCAAAAGTACTTGGTTTCCAGTACTGTGGCGAGCATATAGGG 4139521 Query 9011 TTCGCCATGAGCCCTTTCAAGGAAAACGGAGCCCCCAGCTCGATGATGCTCTCACCGAAG 9070 || ||| ||| ||||||||||| || || || |||| ||| | || ||||||| ||| Sbjct 4139520 TTACCCAGGAGTCCTTTCAAGGAGAATGGTGCTCCCATCTCTACCATCGTCTCACCAAAG 4139461 Query 9071 ATGGCACCGGGACGCGGTTTTTCGACGATGAAGCCAGTGTAGAGTTCGACAGCCTCGACG 9130 || ||| | || || || ||||| || | | | ||| || || || ||||| || | | Sbjct 4139460 ATAGCATCTGGTCGAGGCTTTTCCACCAGAAGGGCAGGATACAGCTCCACAGCATCAATG 4139401 Query 9131 TCGCCATAGAGGGCTTCCAACTCGGCAGCTATCTCCTTCTCACCT 9175 || || || ||||||||||||||| |||| || |||||||| ||| Sbjct 4139400 TCACCGTACAGGGCTTCCAACTCGCCAGCCATTTCCTTCTCTCCT 4139356 Score = 138 bits (152), Expect = 2e-27 Identities = 165/224 (74%), Gaps = 0/224 (0%) Strand=Plus/Minus Query 9739 GTTTGAAACAACTGCTCGTCACCCCATTCCGGGTGTTCGTGTTTGAGAACATCGCAGACC 9798 || || || || |||| ||| |||| ||||| ||||| || || || || || || || Sbjct 4137657 GTCTGGAATAAGCGCTCATCATCCCACTCCGGATGTTCCTGCTTAAGCACGTCACACACT 4137598 Query 9799 CTGTTGTGTTCTCTCAGCCATATGGTGGCGTACATCATTAAACCCGGCACTAAACCAAAC 9858 ||||||||||| | |||||| |||||||| |||||||| | ||| ||||| | ||||| Sbjct 4137597 CTGTTGTGTTCCCGCAGCCAGATGGTGGCATACATCATCAGACCGGGCACGAGGCCAAAG 4137538 Query 9859 ACTTCATTCCCCACTGCAAAGCGCAGATCATCGGGCACTTCGGGCGCATACAGCATATGC 9918 || || | ||||| || |||||| || ||||| || | || | || | ||| | Sbjct 4137537 ACCTCCTGGCCCACCGCGAAGCGCGCATGCTCGGGGACATGGGCTGGGTAGATCATCTCT 4137478 Query 9919 ACCTGGGTCTCTTTGACGGTGGGGGGATACATTTCACCGTCAAT 9962 || ||||| |||||| |||||| || ||||| || || ||||| Sbjct 4137477 ACTTGGGTGTCTTTGGTGGTGGGAGGGTACATCTCCCCATCAAT 4137434 Score = 120 bits (132), Expect = 4e-22 Identities = 132/176 (75%), Gaps = 0/176 (0%) Strand=Plus/Minus Query 10122 CTTACCCCATGCCCCAATCCTGTCGTGAAAGCCGGTCCTCGCACCATATCGGTCCTAAAA 10181 ||||||||||| ||| ||||| ||||||||||||||||| ||| | | | ||| Sbjct 4136531 CTTACCCCATGGGCCAGGCCTGTGGTGAAAGCCGGTCCTCGTTTTTGATCAGACTTGAAA 4136472 Query 10182 AATTGGTGTGTAAAGTGTTGCCCGAAAAAAGCGAACATCAGGTTGGTGCCCTGGGGATCG 10241 || || || || || || || |||| ||||||||||||| ||| ||||| || || || Sbjct 4136471 AACTGATGGGTGAAATGCTGGGCGAAGAAAGCGAACATCATGTTTGTGCCTTGCGGGTCA 4136412 Query 10242 GGGATAAAGGTCCTCCGAATAAAAACTTTGTCCACAATCTGTGTTGAATCGGGCAG 10297 ||||| || |||| | | || |||||| |||| ||||| |||||||||| || Sbjct 4136411 GGGATGAACTTCCTTCTTAGAAGAACTTTTTCCAGAATCTCATTTGAATCGGGAAG 4136356 Score = 109 bits (120), Expect = 8e-19 Identities = 114/150 (76%), Gaps = 0/150 (0%) Strand=Plus/Minus Query 10387 TCACCTTTCACCCCGAGAGGAGTAGGGCAGTCACGAGGAACCGGAGGCAGAGTTCTCGTA 10446 ||||| ||||| || | ||||| |||||||| || || ||||| || | || || Sbjct 4135961 TCACCCTTCACACCCATGGGAGTGGGGCAGTCGTCGGGCACAGGAGGAAGTGCTCGGGTG 4135902 Query 10447 TAATAGGATAGATTCGAAAATGCTTCCCAGCTATTGTAGCCATAATCTAAGTTGTAGAGC 10506 || ||||| || || || || ||||||||||| ||||||| ||||||| |||||| | Sbjct 4135901 TAGTAGGAGAGGTTAGAGAAGGCTTCCCAGCTTTTGTAGCTATAATCTGCGTTGTAAGTC 4135842 Query 10507 GGGGGACTGTCAATCATCTCGGACCTGGCT 10536 || ||||||||||||| | ||||||||| Sbjct 4135841 GGTGGACTGTCAATCAAATGTGACCTGGCT 4135812 Score = 98.7 bits (108), Expect = 1e-15 Identities = 124/168 (74%), Gaps = 2/168 (1%) Strand=Plus/Minus Query 9553 TCAGGCAACAGAGAATGCCAGCGGTAGAGGGTATTGAACTCGGCCGCTATTCGGTTCTGG 9612 || |||| || | ||||||| | ||||| || |||||||||| ||| || ||||||||| Sbjct 4138278 TCGGGCAGAAGGGGATGCCAGTGATAGAGCGTGTTGAACTCGGACGCAATGCGGTTCTGG 4138219 Query 9613 TACT-GAAAGGCGGTACCGAACAGTAACTCCGGGTCAAAGATTAGCTGGAAGTGGTACCC 9671 |||| ||| || | | ||| || | ||| |||||||| | |||| |||||| || || Sbjct 4138218 TACTGGAACTGCTG-GCTGAAGAGCAGCTCTGGGTCAAACTTCAGCTTGAAGTGATATCC 4138160 Query 9672 GCTGAGTTGCTGGACATACTGTGTGATTATAATGTTAATGGTTTCCCC 9719 ||| | ||||| ||||| | | || | || ||||| ||||| || Sbjct 4138159 GCTCAAGTGCTGCACATAGTCTTCAATCACGATCTTAATAGTTTCTCC 4138112 >seq138 Length=7537758 Score = 129 bits (142), Expect = 8e-25 Identities = 199/284 (70%), Gaps = 0/284 (0%) Strand=Plus/Plus Query 8891 AACGGACATCCCTTCACATTGGCACAAATGAGGGACTGAATGGTTGCGGTTTTCACGATG 8950 || ||||| ||||||||||| || || |||||||||||| || || || | ||| Sbjct 3102479 AAAGGACAACCCTTCACATTTCTGCAGATCAGGGACTGAATGAAAGCTGTGTTGATGATC 3102538 Query 8951 TCTAAACCTACGTCCCCGCCGAAGGTGCTGGGTTTCCAGTACGCCGGGGAGCAGATGACG 9010 || || || || || || || | || || || ||||||||| || ||||| || | Sbjct 3102539 TCAAAGCCCACTTCTCCTCCAGAAGTACTTGGCTTCCAGTACCGTGGCGAGCATATAGGG 3102598 Query 9011 TTCGCCATGAGCCCTTTCAAGGAAAACGGAGCCCCCAGCTCGATGATGCTCTCACCGAAG 9070 || | ||| ||| ||||||| || || || |||| ||| | || ||||||||||| Sbjct 3102599 TTAATCCGGAGTCCTGTCAAGGAGAAAGGTGCTCCCATCTCTACCATCGTCTCACCGAAG 3102658 Query 9071 ATGGCACCGGGACGCGGTTTTTCGACGATGAAGCCAGTGTAGAGTTCGACAGCCTCGACG 9130 || ||| || | || ||||| || | | | || || || || | ||| || | Sbjct 3102659 ATAGCATGTGGCCAAGGCTTTTCCACCAGAAGGGCAAGATACAGCTCCATAGCATCAGTG 3102718 Query 9131 TCGCCATAGAGGGCTTCCAACTCGGCAGCTATCTCCTTCTCACC 9174 || || |||||||||||||| |||||||| | |||||||| || Sbjct 3102719 TCACCGTAGAGGGCTTCCAATTCGGCAGCCACTTCCTTCTCTCC 3102762 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 723663452509000